TCONS_00022788 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022788
Unique NameTCONS_00022788
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022788 ID=TCONS_00022788|Name=TCONS_00022788|organism=Clytia hemisphaerica|type=transcript|length=505bp
ttcacTGTGAAGAAACCCGAAGAACCTCGGTGagaaattaataaataaac
atGACAACGGTACGAACAAAACGACATAATGAAGTGGAAATGTTTCAATT
TGAGGGAACATTACCCAAAAACACATATAAACACAAAGAAGAGAACTTCT
ACAGATTCCTAGTGTACTATGGGCTAGAGGGGAAGGTACATCAGGAGGAT
ATATTATCAATCCACGTCTCGAGAAACATGAGACTAACTCTTCATCTAAC
ACCCAGTGGTCGATTGAACTTTGGGCCAGAACAATCTTTAAACGTCCCAA
CCAATGCCTCTGGTACAAGACAGGCGGCGTATTCACTTTTAAACAATGCG
ACCTGAAGAGTCCTTCCTGGACAATTAGCCTACTCCTAAGTCCCTGGAAA
TTATACAGGTGAGGAGAAAGAGCTTTTGGAGTTCCTAAAACAGTACGGAC
ATTTAAAACATATCACTAGAAATAAAATCCATTCCTTAGAAAAAGGAGAG
TTCAA
Run BLAST on NCBI

transcript from alignment at sc0000432:62292..62796

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022788 ID=TCONS_00022788|Name=TCONS_00022788|organism=Clytia hemisphaerica|type=transcript|length=505bp|location=Sequence derived from alignment at sc0000432:62292..62796 (Clytia hemisphaerica)
TTGAACTCTCCTTTTTCTAAGGAATGGATTTTATTTCTAGTGATATGTTT
TAAATGTCCGTACTGTTTTAGGAACTCCAAAAGCTCTTTCTCCTCACCTG
TATAATTTCCAGGGACTTAGGAGTAGGCTAATTGTCCAGGAAGGACTCTT
CAGGTCGCATTGTTTAAAAGTGAATACGCCGCCTGTCTTGTACCAGAGGC
ATTGGTTGGGACGTTTAAAGATTGTTCTGGCCCAAAGTTCAATCGACCAC
TGGGTGTTAGATGAAGAGTTAGTCTCATGTTTCTCGAGACGTGGATTGAT
AATATATCCTCCTGATGTACCTTCCCCTCTAGCCCATAGTACACTAGGAA
TCTGTAGAAGTTCTCTTCTTTGTGTTTATATGTGTTTTTGGGTAATGTTC
CCTCAAATTGAAACATTTCCACTTCATTATGTCGTTTTGTTCGTACCGTT
GTCatgtttatttattaatttctCACCGAGGTTCTTCGGGTTTCTTCACA
gtgaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012801XLOC_012801Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022788-exon-sc0000432-1491911889:62292..62796TCONS_00022788-exon-sc0000432-1491911889:62292..62796Clytia hemisphaericaexon
TCONS_00022788-exon-sc0000432-1510915933:62292..62796TCONS_00022788-exon-sc0000432-1510915933:62292..62796Clytia hemisphaericaexon
TCONS_00022788-exon-sc0000432-1575043694:62292..62796TCONS_00022788-exon-sc0000432-1575043694:62292..62796Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000432supercontigsc0000432:62292..62796 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.135709	0	0.161634	0	0	0.144262	0	0	0	0	0	0	0	0	0	0	0	0.133326	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022788 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top