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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022786 ID=TCONS_00022786|Name=TCONS_00022786|organism=Clytia hemisphaerica|type=transcript|length=1942bp
gacaaattttatgttttgttacGTCATTTGGGCTCTAAATGATGTCATCG
AATGTGTAATCAGGTGTAATaagaataataaataataataatgtaataaa
taataataatatatacaagttcaaggcacacgagggcctctgagaaccgg
atcttgattacaattgtcttgtctcaaatcttttcggatgttttttccaa
gcttcattgagtctttctttaaagattttgacaGTCTTTGCCTCTACAAC
GTATCTTGGTAATCTATTCCAGTTTGGTATACTCCTGTAAAAGAACGAGT
TGGTTTGTGCACCTCGGAATCCATCTTTACCAAAATTTGGTATCAGCTCA
TCATTGTGTCTCCTGTTAGGACGTGTTCGAGTCGATAATTTACTTGGAAG
AGTATTTTTATCGTAGTAGTGGAGATGTTTGTATACTTGGACCATATCAC
AAAAGAGTCTCCTGAATTCAAGTGTGGGGAGGTCAAGTATGGGCAAGCGT
TCTTCATAAGACATATCTTTGCAGATAGGCATGAGCCTTGTGGCGCGTCT
TTGTACACCCTCGatcaaattaacatattttcgAAGTTTAAGTGACCATA
CCGACTGAGCATACTCCAAGTGCGGACGGACAAACGAAGTATATAGTACT
AGGAAGATGGATGGATTCAGATGTTCAAAGCTCCTGTTAATCACTCCTAG
TTGAATTTGCCTTCTTTACCTGCTTTGCAATATACTCCTCGAATGTAAGT
TCTGAGTCGATCACAATCCCAAGATCtttctcttcaaaaacatgttctAG
CTGATTTCCATCAAAACAATATGGATAGGCATGTTTGATGTCAGAGAATT
TGCCAATAGTTAGTACGTGACATTTGTCGGGATGGAAATTTAATAACCAT
TCTTTCAACCACTTGACTAGCGCGTCTATATCCTGTTGGATGGAAATAGA
GTCTTCGANagaataataaataataataatgtaataaataataataatat
atacaagttcaaggcacacgagggcctctgagaACCGGATCTTGATTACA
ACTGTCTTGTCTCAAATCTTTTCGGatgttttttccaagcttcgTTGAGT
CTTTCTTTAAAGATNTTTCCCTCCGATGTACTTTCACAACACGTATCCAA
GTAATACAACAGTTGCGTAACGGTGgatcgatttttgataaaaccatATT
GCTTGTTCGATAAAAGACGTTGATCAAGAAGATGCTCCATAATATGCTTT
CTCACTATTGACTCCATCAACTTGCATACTATTGATGTCAAACTTACAGG
TCGATAATTTACTGCAAGATTTTGAGcacctttgttcttatatatgGGTA
TTACGTGAGCTTCTTTCCAATCCTTCGATAGAGACCCTTCCTTTAGTGAT
GTGTTCATTATTACTGCAAGAGGTTCAGAGATGTAGTCAGATAACGACAG
TAGCATCTTAGGATGTATTCCATCAGGACCgaatgatttattttgattta
gatGTTTTATTTCGATCTGGATCATTTCTTTTGTTATGTATATGGATTTC
ATCGATTACGGACTCAGTTCTTTTCTCAAAGTCCGATAGCTCCCCAGGAG
GCTCTCTTGTGAAAACACAGTAGAACTGACGTTGAAGTATATTCCCCTTT
TCATGGTGTTAAATAGGTATTTACCAACCTAGTGATTGCTGATCCTTGCT
TGACCGGATGCAATATAAACCAATATAATAAGTCTTCCCAACAGAAGACT
TGATGAACACAATCCAACTTGAACCAACACAAGAATCAATATGAACGTTT
ACCATTTACAGATTACACATAAATCCCCACTGGCTATCATATATTATTGT
TTATCACTTTGTATTATTCATCTATAAGGTAGAGATTAACACATGGTCTT
CatgtttcaaagaatttttgtcatttggtGCCTCAAGTTATG Run BLAST on NCBI protein sequence of TCONS_00022786-protein >TCONS_00022786-protein ID=TCONS_00022786-protein|Name=TCONS_00022786-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MKSIYITKEMIQIEIKHLNQNKSFGPDGIHPKMLLSLSDYISEPLAVIMN
TSLKEGSLSKDWKEAHVIPIYKNKGAQNLAVNYRPVSLTSIVCKLMESIV
RKHIMEHLLDQRLLSNKQYGFIKNRSTVTQLLYYLDTCCESTSEGXIFKE
RLNEAWKKHPKRFETRQL Run BLAST on NCBI transcript from alignment at sc0000432:45515..47456 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022786 ID=TCONS_00022786|Name=TCONS_00022786|organism=Clytia hemisphaerica|type=transcript|length=1942bp|location=Sequence derived from alignment at sc0000432:45515..47456 (Clytia hemisphaerica)
CATAACTTGAGGCaccaaatgacaaaaattctttgaaacatGAAGACCAT
GTGTTAATCTCTACCTTATAGATGAATAATACAAAGTGATAAACAATAAT
ATATGATAGCCAGTGGGGATTTATGTGTAATCTGTAAATGGTAAACGTTC
ATATTGATTCTTGTGTTGGTTCAAGTTGGATTGTGTTCATCAAGTCTTCT
GTTGGGAAGACTTATTATATTGGTTTATATTGCATCCGGTCAAGCAAGGA
TCAGCAATCACTAGGTTGGTAAATACCTATTTAACACCATGAAAAGGGGA
ATATACTTCAACGTCAGTTCTACTGTGTTTTCACAAGAGAGCCTCCTGGG
GAGCTATCGGACTTTGAGAAAAGAACTGAGTCCGTAATCGATGAAATCCA
TATACATAACAAAAGAAATGATCCAGATCGAAATAAAACatctaaatcaa
aataaatcattcGGTCCTGATGGAATACATCCTAAGATGCTACTGTCGTT
ATCTGACTACATCTCTGAACCTCTTGCAGTAATAATGAACACATCACTAA
AGGAAGGGTCTCTATCGAAGGATTGGAAAGAAGCTCACGTAATACCcata
tataagaacaaaggtgCTCAAAATCTTGCAGTAAATTATCGACCTGTAAG
TTTGACATCAATAGTATGCAAGTTGATGGAGTCAATAGTGAGAAAGCATA
TTATGGAGCATCTTCTTGATCAACGTCTTTTATCGAACAAGCAATatggt
tttatcaaaaatcgatcCACCGTTACGCAACTGTTGTATTACTTGGATAC
GTGTTGTGAAAGTACATCGGAGGGAAANATCTTTAAAGAAAGACTCAAcg
aagcttggaaaaaacatCCGAAAAGATTTGAGACAAGACAGTTGTAATCA
AGATCCGGTtctcagaggccctcgtgtgccttgaacttgtatatattatt
attatttattacattattattatttattattctNTCGAAGACTCTATTTC
CATCCAACAGGATATAGACGCGCTAGTCAAGTGGTTGAAAGAATGGTTAT
TAAATTTCCATCCCGACAAATGTCACGTACTAACTATTGGCAAATTCTCT
GACATCAAACATGCCTATCCATATTGTTTTGATGGAAATCAGCTagaaca
tgtttttgaagagaaaGATCTTGGGATTGTGATCGACTCAGAACTTACAT
TCGAGGAGTATATTGCAAAGCAGGTAAAGAAGGCAAATTCAACTAGGAGT
GATTAACAGGAGCTTTGAACATCTGAATCCATCCATCTTCCTAGTACTAT
ATACTTCGTTTGTCCGTCCGCACTTGGAGTATGCTCAGTCGGTATGGTCA
CTTAAACTTcgaaaatatgttaatttgatCGAGGGTGTACAAAGACGCGC
CACAAGGCTCATGCCTATCTGCAAAGATATGTCTTATGAAGAACGCTTGC
CCATACTTGACCTCCCCACACTTGAATTCAGGAGACTCTTTTGTGATATG
GTCCAAGTATACAAACATCTCCACTACTACGATAAAAATACTCTTCCAAG
TAAATTATCGACTCGAACACGTCCTAACAGGAGACACAATGATGAGCTGA
TACCAAATTTTGGTAAAGATGGATTCCGAGGTGCACAAACCAACTCGTTC
TTTTACAGGAGTATACCAAACTGGAATAGATTACCAAGATACGTTGTAGA
GGCAAAGACtgtcaaaatctttaaagaaagactcaatgaagcttggaaaa
aacatccgaaaagatttgagacaagacaattgtaatcaagatccggttct
cagaggccctcgtgtgccttgaacttgtatatattattattatttattac
attattattatttattattcttATTACACCTGATTACACATTCGATGACA
TCATTTAGAGCCCAAATGACgtaacaaaacataaaatttgtc Coding sequence (CDS) from alignment at sc0000432:45515..47456 >TCONS_00022786 ID=TCONS_00022786|Name=TCONS_00022786|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at sc0000432:45515..47456 (Clytia hemisphaerica)
ATGAAATCCATATACATAACAAAAGAAATGATCCAGATCGAAATAAAACa
tctaaatcaaaataaatcattcGGTCCTGATGGAATACATCCTAAGATGC
TACTGTCGTTATCTGACTACATCTCTGAACCTCTTGCAGTAATAATGAAC
ACATCACTAAAGGAAGGGTCTCTATCGAAGGATTGGAAAGAAGCTCACGT
AATACCcatatataagaacaaaggtgCTCAAAATCTTGCAGTAAATTATC
GACCTGTAAGTTTGACATCAATAGTATGCAAGTTGATGGAGTCAATAGTG
AGAAAGCATATTATGGAGCATCTTCTTGATCAACGTCTTTTATCGAACAA
GCAATatggttttatcaaaaatcgatcCACCGTTACGCAACTGTTGTATT
ACTTGGATACGTGTTGTGAAAGTACATCGGAGGGAAANATCTTTAAAGAA
AGACTCAAcgaagcttggaaaaaacatCCGAAAAGATTTGAGACAAGACA
GTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022786-exon-sc0000432-1491911889:45515..47456 | TCONS_00022786-exon-sc0000432-1491911889:45515..47456 | Clytia hemisphaerica | exon |
| TCONS_00022786-exon-sc0000432-1510915933:45515..47456 | TCONS_00022786-exon-sc0000432-1510915933:45515..47456 | Clytia hemisphaerica | exon |
| TCONS_00022786-exon-sc0000432-1575043694:45515..47456 | TCONS_00022786-exon-sc0000432-1575043694:45515..47456 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000432 | supercontig | sc0000432:45515..47456 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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