|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022781 ID=TCONS_00022781|Name=TCONS_00022781|organism=Clytia hemisphaerica|type=transcript|length=631bp
CAGAGATATCACTTGGATTCGTATTCAAGCTTATGATGTGAGAAATCCAC
ATCGAAGAGCTTGGTTTCAACCTATAATGGGACCAAAGTTCAGCAATTTT
AGTTCAGAATTGACAAACACCATTTGGAACATGCACAAAGTTATCGGGAA
TGCAAGTACGGGTGAAGAAATGTTTAACATTTATGAGCAAAATGATGAAT
TCATTCCTGGCCGCGCGTCCGCATCAAGTCTTCATTTCGATCTCGGAACC
GTAGGTGAAAAAGAAGAACACAACTTGTGCGTCTACAATCTCCAAGTTGC
AGCAAACAAACAACAGAAAGTTCCAAAAAGTCATACACAAAATACATCAG
ATGAGGAACCACCAAGCTATCGTCAAAACGTCTGTGGTGTTTTGCAGCTA
TCCACAAAATATCCAACTAAATTGGATTTGAAGAAAAGCTGGGATGCTAC
TACCGTTAAGAAAGATGAAAATGGCAAAGCATGGGCTTATTTTTACATGG
TGACAAAATCTGGTGAACTCAAATAAACCACATTCTAAACAattgtttag
atttttttcaataaccaccaaaaggaagaaaacttttttcatcttGAATA
GATATATAGTAACAAATTAacattatttttg Run BLAST on NCBI protein sequence of TCONS_00022781-protein >TCONS_00022781-protein ID=TCONS_00022781-protein|Name=TCONS_00022781-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
RDITWIRIQAYDVRNPHRRAWFQPIMGPKFSNFSSELTNTIWNMHKVIGN
ASTGEEMFNIYEQNDEFIPGRASASSLHFDLGTVGEKEEHNLCVYNLQVA
ANKQQKVPKSHTQNTSDEEPPSYRQNVCGVLQLSTKYPTKLDLKKSWDAT
TVKKDENGKAWAYFYMVTKSGELK Run BLAST on NCBI transcript from alignment at sc0000432:216425..217478- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022781 ID=TCONS_00022781|Name=TCONS_00022781|organism=Clytia hemisphaerica|type=transcript|length=1054bp|location=Sequence derived from alignment at sc0000432:216425..217478- (Clytia hemisphaerica)
CAGAGATATCACTTGGATTCGTATTCAAGCTTATGATGTGAGAAATCCAC
ATCGAAGAGCTTGGTTTCAACCTATAATGGGACCAAAGTTCAGCAGTATG
TAAATGTCTTATTTGATAGAAAAGTAACTCCAAATCATAAAGTTTGAAGC
CTGAAGGGTTAAATGGGACTGTTCGACTTTTCCCGAACAAGAAAAAGTAA
AGCCTTAACATAAAGCGCCGTATTTTGTAAAAATCGAGAAAGTCACATGT
TTTGAATTGAGAATGCGCAACATTATGATCTAGCCCCTTAGGGTTTTTTT
AAACTGGAATATTTTGAGAGCGGTATCTATTTTTATTAATAAAGTTTTTG
TACTGCAGGACGCCACTTTGTTAAAATTATAAGCTCTTCCCCCAACTTTC
AAAAGAGGTTCAGGTCAGCTAGGCTTGAATGAAGCTTTTAAGATATAAAA
TAATATTTTAAGTTCTTAAAGAAAAATCATAAAAAACTCTTCCAGTATGA
AGGCGTATTTCATTTCAGATTTTAGTTCAGAATTGACAAACACCATTTGG
AACATGCACAAAGTTATCGGGAATGCAAGTACGGGTGAAGAAATGTTTAA
CATTTATGAGCAAAATGATGAATTCATTCCTGGCCGCGCGTCCGCATCAA
GTCTTCATTTCGATCTCGGAACCGTAGGTGAAAAAGAAGAACACAACTTG
TGCGTCTACAATCTCCAAGTTGCAGCAAACAAACAACAGAAAGTTCCAAA
AAGTCATACACAAAATACATCAGATGAGGAACCACCAAGCTATCGTCAAA
ACGTCTGTGGTGTTTTGCAGCTATCCACAAAATATCCAACTAAATTGGAT
TTGAAGAAAAGCTGGGATGCTACTACCGTTAAGAAAGATGAAAATGGCAA
AGCATGGGCTTATTTTTACATGGTGACAAAATCTGGTGAACTCAAATAAA
CCACATTCTAAACAATTGTTTAGATTTTTTTCAATAACCACCAAAAGGAA
GAAAACTTTTTTCATCTTGAATAGATATATAGTAACAAATTAACATTATT
TTTG Coding sequence (CDS) from alignment at sc0000432:216425..217478- >TCONS_00022781 ID=TCONS_00022781|Name=TCONS_00022781|organism=Clytia hemisphaerica|type=CDS|length=1050bp|location=Sequence derived from alignment at sc0000432:216425..217478- (Clytia hemisphaerica)
ATTTTAGTTCAGAATTGACAAACACCATTTGGAACATGCACAAAGTTATC
GGGAATGCAAGTACGGGTGAAGAAATGTTTAACATTTATGAGCAAAATGA
TGAATTCATTCCTGGCCGCGCGTCCGCATCAAGTCTTCATTTCGATCTCG
GAACCGTAGGTGAAAAAGAAGAACACAACTTGTGCGTCTACAATCTCCAA
GTTGCAGCAAACAAACAACAGAAAGTTCCAAAAAGTCATACACAAAATAC
ATCAGATGAGGAACCACCAAGCTATCGTCAAAACGTCTGTGGTGTTTTGC
AGCTATCCACAAAATATCCAACTAAATTGGATTTGAAGAAAAGCTGGGAT
GCTACTACCGTTAAGAAAGATGAAAATGGCAAAGCATGGGCTTATTTTTA
CATGGTGACAAAATCTGGTGAACTCAAATAAAGAGATATCACTTGGATTC
GTATTCAAGCTTATGATGTGAGAAATCCACATCGAAGAGCTTGGTTTCAA
CCTATAATGGGACCAAAGTTCAGCAATTTTAGTTCAGAATTGACAAACAC
CATTTGGAACATGCACAAAGTTATCGGGAATGCAAGTACGGGTGAAGAAA
TGTTTAACATTTATGAGCAAAATGATGAATTCATTCCTGGCCGCGCGTCC
GCATCAAGTCTTCATTTCGATCTCGGAACCGTAGGTGAAAAAGAAGAACA
CAACTTGTGCGTCTACAATCTCCAAGTTGCAGCAAACAAACAACAGAAAG
TTCCAAAAAGTCATACACAAAATACATCAGATGAGGAACCACCAAGCTAT
CGTCAAAACGTCTGTGGTGTTTTGCAGCTATCCACAAAATATCCAACTAA
ATTGGATTTGAAGAAAAGCTGGGATGCTACTACCGTTAAGAAAGATGAAA
ATGGCAAAGCATGGGCTTATTTTTACATGGTGACAAAATCTGGTGAACTC
AAATAAAGAGATATCACTTGGATTCGTATTCAAGCTTATGATGTGAGAAA
TCCACATCGAAGAGCTTGGTTTCAACCTATAATGGGACCAAAGTTCAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022781-exon-sc0000432-1575043694:217384..217478 | TCONS_00022781-exon-sc0000432-1575043694:217384..217478 | Clytia hemisphaerica | exon |
| TCONS_00022781-exon-sc0000432-1575043694:216425..216960 | TCONS_00022781-exon-sc0000432-1575043694:216425..216960 | Clytia hemisphaerica | exon |
| TCONS_00022781-exon-sc0000432-1510915933:217384..217478 | TCONS_00022781-exon-sc0000432-1510915933:217384..217478 | Clytia hemisphaerica | exon |
| TCONS_00022781-exon-sc0000432-1510915933:216425..216960 | TCONS_00022781-exon-sc0000432-1510915933:216425..216960 | Clytia hemisphaerica | exon |
| TCONS_00022781-exon-sc0000432-1491911889:217384..217478 | TCONS_00022781-exon-sc0000432-1491911889:217384..217478 | Clytia hemisphaerica | exon |
| TCONS_00022781-exon-sc0000432-1491911889:216425..216960 | TCONS_00022781-exon-sc0000432-1491911889:216425..216960 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000432 | supercontig | sc0000432:216425..217478 - |
Blast
The following BLAST results are available for this feature:
|
