TCONS_00022776 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022776
Unique NameTCONS_00022776
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length667

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022776 ID=TCONS_00022776|Name=TCONS_00022776|organism=Clytia hemisphaerica|type=transcript|length=667bp
caggaaaataaaaaaatgaaacaatattaATACAACACAATACACACGAT
GAATACTGGGGTGCCAGCTACAGAAGAACCGACTTTTCCCAATGTTGCGT
TTGTCGAAAACAAGATAGGAGCTGGAGCTAATGATGAAAAATCAGAACAT
GTGTTAACATCAACATACAGCAAGTCTGACAAAACATTAGTCAAGCAGTT
ACCACAACCCAGCCAGCCTCAAAACAAGAGGAAACCGTCTCCCTCTAGTA
GCGTTCAGGAGCCAgtggtgaaaaagaaaatctccTCAGAGGAGAATGAT
GAACGAGATGTTGGATTGCAACAGGATGAGGGTCAATCGCTAGTTTATGC
TTGTATTaAGGTGCAACTGAAAACCAATGATTGGGTTGAAACCCAAGAGA
CAGTCGAACATGTTATACATTGCTCCAAAAAAGACGGCCATCAGTGCAAT
AGAAAGAACTGTAAAAACATGAAAATTGCCATCGAATCAAGTTGTCAAGT
CATCAGTCCTTCAGAGGTAGTCGATTACGGTCCATCATTAGACAATAAAG
AATTGATGGTCAAGTATGGCAGAGGTGGTTTTGCTGATGTGTACGTTGGA
CTGTCCATGATTGGAGAGAATCTTACTGCGTACAAACTAATTCGTAACAA
GGTAACAAAGTCCGGCA
Run BLAST on NCBI

transcript from alignment at sc0000432:154221..157298-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022776 ID=TCONS_00022776|Name=TCONS_00022776|organism=Clytia hemisphaerica|type=transcript|length=3078bp|location=Sequence derived from alignment at sc0000432:154221..157298- (Clytia hemisphaerica)
CAGGAAAATAAAAAAATGAAACAATATTAATACAACACAATACACACGAT
GAATACTGGGGTGCCAGCTACAGAAGAACCGACTTTTCCCAATGTTGCGT
TTGTCGAAAACAAGATAGGAGGTAGGTTTTACTTTAACTAAGAAATTTAG
ATGGTACTACTATGCAACCCTGACGGATTACTAAAAAGCAATTTGTATTG
TTTGTGATATTTCGATAATGAAGTTATTGAGATGTTAGAGCTTAAAGTAC
CAAAGAATTTGTTGAAAGATGCTGACTCAAATCTCGGCTAATACACATCA
AAACAGATCAAAAAAGGAAGAAAAAATACCATATCAAGATAATACTATAC
ATAATCTGCTTTTAAATGTTTAGCACTCAAATCTATTATAAATCTTTACG
TTTTTTTAGCTGGAGCTAATGATGAAAAATCAGAACATGTGTTAACATCA
ACATACAGCAAGTCTGACAAAACATTAGTCAAGCAGTTACCACAACCCAG
CCAGCCTCAAAACAAGAGGAAACCGTCTCCCTCTAGTAGCGTTCAGGAGC
CAGTGGTGAAAAAGAAAATCTCCTCAGAGGAGAATGATGAACGAGATGTT
GGATTGCAACAGGATGAGGGTCAATCGCTAGTTTATGCTTGTATTGTAAG
TTTGCGTTTCTAGAAAAAGAATTTACCCCATTGCTGATGAGAGCATAATT
TTCCGTACATGCCATGGGAGGGGGTGTTACGCTCATAAAAGCTGGAAATG
TACCATTTAGGAGGTGGTTCCATATAATCGACTGTGGCGAATTAAGGAAT
ATGTCCTGATTTAGAATCCACCCCGTTAAATGGAATATTTTGACATGGAT
TTTAAATTTCCTCGATCAGGTTTTTTTTAAACGCAAGTGAACTACTATCA
GCTAAGGTAAAAGTCAAGGGGGTCTTGGTCGGAAGAATGGTTGATGGGAT
CAGCGAGGTTAAATCCATTCTGCCGTACGCTGAAAAAATCGTGTTTGGAG
AGTATCAAGTTAAAACCCAAAGGGTGTCAAAAAGTAAAAATTTCAGGTAT
CTTAAACAGCCTCATACTAATTCTTTCAATAATAGATCAAACCCAGCGAT
ATAGATTTTTGTTTTTAAGGTTTTGAAAGAATGTTTTTTTTTCTCGTTTT
AGAAAAGAATCCTCCCGACTGAGAAAGAGGTAAACTACTGGTTGGATCGA
AAAACAACACTTTCTCTACACGTAGTGTTCAAACGAGCGGGCTAGTGAAA
AATTCGTTGTCTTAATACAACTTTTTACGAATTCTTATGTAAGAGAAATT
GTGTCGAATCAAATAACATTTACCTTTTTAAGATGATACGCTTTTTAATA
ATACTTAATAAAGAATTTTTTTTTCTTTAATAGAAGGTGCAACTGAAAAC
CAATGATTGGGTTGAAACCCAAGAGACAGTCGAACATGTTATACATTGCT
CCAAAAAAGACGGCCATCAGTGCAATAGAAAGAACTGTAAAAACATGAAG
TAAGACTTTGTCATGCCACATGCTAAGACAAGGCTGTAAACCAAGGCTAT
AAACCAAAGTGTGACTTTATTGTAGCCTCTATGGCAATGCATTTCCGGGA
TCCCCAGTTCAAATAGGATCAAGGTCACATTTAAATGGTTTTTTTGGGTG
TAGATTCCGAAAAAATAGGTCTCAAAGTAATAATATTATATAATATATTG
AGAAGATAAACTTTCGACGTTTCGAATGGAATTGACTGGTCGTCATTGTT
TTAAAGGAATTAATTAATCAATTAAATTAATTAATGCAAATCGCTGAATT
TTTCATTCCTGGATGCTAATAGCTTCATTCATGATTCTGACCTTCTATTT
TTCAAACTACTAATTTCTCTTTACAGAATTGCCATCGAATCAAGTTGTCA
AGTCATCAGTCCTTCAGAGGTAGAGAATTTGCTTTACCCTCCCTTAACCT
CTCAAATTTTCATTCATTCATCTAAAATAATATGCGAGTCTTTAGGTTAT
TTGAGTTTAGAAACACTCGTCACGTCCGGGATAATTCTTTAATAATTTAA
AAATTATTTTGAAGAAACAAAACACATCGACTCGACCTTTATGTAGGTGG
ACAAACATTAACAGAAACCTTTCCTTAGTATCAGGGCAGCAGATCACTGA
ATATCTCTTAGCTTAATTAACTCCTTCTCTCCGGGATAAACGCACTGCTC
TTGTTTTGAATATAGAAGTTTTCTACGGGGAAAAAAGGAGCTTATTTTAG
ACAGTGTCTTCATGCTGAGTCAGATAAATTAAAGCTACTTTTTTTATGCA
ACAATATCCTGCAAACAAGTGAAAGATCGAAAGTTGTTTCGAGATGTGAC
CTCACATACTATTGCTTTTGTAAACAAAAAAATAACAAAGTTGATTTCGA
GCAAATTTACAATCGAATGTTTTGATTATAAGATAAACGTTCTATTTATT
ATAAACATAAAAACATTCGAAAGTAATGTCTTTTATTCAATGTAATTAGG
TATTTTCATTTTTTCAAAACAAGATGAAGAAAAAAATAGAGGTTCCCTTT
CCACTGTTTTGACAGCAATTTCCAGTGCCATACACAATCATTTATGACTG
TGATTGTGGTCCAATATTTATGTGTCGTGTTGTCGAGACTTTATTCCATC
CATAATCCAGGTAGTCGATTACGGTCCATCATTAGACAATAAAGAATTGA
TGGTCAAGTATGGCAGAGGTGGTTTTGCTGATGTGTACGTTGGACTGTCC
ATGATTGGAGAGAATCTTACTGCGTACAAACTAATTCGTAACAAGGTAGA
AATTGTAATTTTTTTTATATCGAGAGGAAAAGTTTTCACTTAAAAGTCGT
TAACGGTTATTAGAATAAAAACGGACAGATTTGTTCAAAATAACAGAGGA
TCTATGGATTTTTTATAGTCTTTCGATTGTTTTCGCGGGGTACACGGGGT
ACACGATCTCCGCCTGGCTGTCTGTGAACTGAACAGAACATGAGGATAAC
CGGGTTTTGGAGCCGGGAACCCCTGATCTCTTTATTCTCTGCGTCTTTTT
ACTTTTATCAAGGTAACAAAGTCCGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012791XLOC_012791Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022776-exon-sc0000432-1575043694:157178..157298TCONS_00022776-exon-sc0000432-1575043694:157178..157298Clytia hemisphaericaexon
TCONS_00022776-exon-sc0000432-1575043694:156654..156889TCONS_00022776-exon-sc0000432-1575043694:156654..156889Clytia hemisphaericaexon
TCONS_00022776-exon-sc0000432-1575043694:155800..155915TCONS_00022776-exon-sc0000432-1575043694:155800..155915Clytia hemisphaericaexon
TCONS_00022776-exon-sc0000432-1575043694:155380..155422TCONS_00022776-exon-sc0000432-1575043694:155380..155422Clytia hemisphaericaexon
TCONS_00022776-exon-sc0000432-1575043694:154504..154638TCONS_00022776-exon-sc0000432-1575043694:154504..154638Clytia hemisphaericaexon
TCONS_00022776-exon-sc0000432-1575043694:154221..154236TCONS_00022776-exon-sc0000432-1575043694:154221..154236Clytia hemisphaericaexon
TCONS_00022776-exon-sc0000432-1510915933:157178..157298TCONS_00022776-exon-sc0000432-1510915933:157178..157298Clytia hemisphaericaexon
TCONS_00022776-exon-sc0000432-1510915933:156654..156889TCONS_00022776-exon-sc0000432-1510915933:156654..156889Clytia hemisphaericaexon
TCONS_00022776-exon-sc0000432-1510915933:155800..155915TCONS_00022776-exon-sc0000432-1510915933:155800..155915Clytia hemisphaericaexon
TCONS_00022776-exon-sc0000432-1510915933:155380..155422TCONS_00022776-exon-sc0000432-1510915933:155380..155422Clytia hemisphaericaexon
TCONS_00022776-exon-sc0000432-1510915933:154504..154638TCONS_00022776-exon-sc0000432-1510915933:154504..154638Clytia hemisphaericaexon
TCONS_00022776-exon-sc0000432-1510915933:154221..154236TCONS_00022776-exon-sc0000432-1510915933:154221..154236Clytia hemisphaericaexon
TCONS_00022776-exon-sc0000432-1491911889:157178..157298TCONS_00022776-exon-sc0000432-1491911889:157178..157298Clytia hemisphaericaexon
TCONS_00022776-exon-sc0000432-1491911889:156654..156889TCONS_00022776-exon-sc0000432-1491911889:156654..156889Clytia hemisphaericaexon
TCONS_00022776-exon-sc0000432-1491911889:155800..155915TCONS_00022776-exon-sc0000432-1491911889:155800..155915Clytia hemisphaericaexon
TCONS_00022776-exon-sc0000432-1491911889:155380..155422TCONS_00022776-exon-sc0000432-1491911889:155380..155422Clytia hemisphaericaexon
TCONS_00022776-exon-sc0000432-1491911889:154504..154638TCONS_00022776-exon-sc0000432-1491911889:154504..154638Clytia hemisphaericaexon
TCONS_00022776-exon-sc0000432-1491911889:154221..154236TCONS_00022776-exon-sc0000432-1491911889:154221..154236Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000432supercontigsc0000432:154221..157298 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.802378	0.00409462	0	0	0	0.948497	0.725145	0.712137	2.61195	3.39757	0.124261	3.33442	7.21622	10.4828	2.71682	4.17382	2.64641	3.83272	6.15144	6.68233	1.78238	0.000167659	0	0.78372	5.67192	5.66464	0	0.795001	0	0.000382028
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022776 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top