TCONS_00022772 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022772
Unique NameTCONS_00022772
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length939

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022772 ID=TCONS_00022772|Name=TCONS_00022772|organism=Clytia hemisphaerica|type=transcript|length=939bp
GATGCCTTTTGTCGAGGCAACATTCTTTGACCTTCTCGAACAGCAGCCAG
GACATCGTTTGTGCACACAAGATTCTGTCATCTATCTTGGATCTTTGGTC
AGCCTACTACGGTACCTACACATCGATTGTACTTTGGCTCATTTAGATCT
AAAAGctgAAAATATTGGCTTAAATGGTAATAAGACAGTCCTTTTGGATT
TGGATTCGCTTCAATCGATAGGTGACCGTTTCTGGCCGTGTGGTACGCCG
GGATATGCAGCACAGGAAGTCGTCAAGGCGGCGCATGATCATTCGATAGC
GCAGAAAACGCTCGTCCATTCATCTATGGATATGTTTTCCTTTGGGATGC
TATTCTTATTTCTGGTGACTGGAATACAACCAAGTCTCATCAAGTGTCCA
AACCATGGTAACACACCAGATAGTGACCCTGCATTGTGTGATTGCCAAGA
TTGTCATGAGATGAAGTGCAATCTACTGAGGAGAGCCATGATGCACGATC
TTCATCCTAATGGTAATGACGAGATTGTCAATTATTTGATGGAAATGTTT
CAACAATGCACAATGGTTAATCAATTCCTTCAAAAGACGAAAAAAGGAAC
GGACATAGATTCATTGATCCTATCCAAAATTGATCTTATGGTATTCTAAT
TGCATTATTTTGGGAACTAAAAAGTCACTGAATTTCCTGTTGCACACTTA
CAATGGAGTGAATGTATCACAAAGCACCGTTGTCGGCTGCTTAGTTTAAA
CTATTCCAAACTAATCAGGATGAtagacatttttttatttaggCATAACG
CCTTTTCAAGCAGACTTTTCCATCCGATTGGTAGTTTGCGTGTTTTGTTA
TTAATTATGGTTTATGTTATTCTTTTCTATCCaagaatttgataaatttc
ttttttaagagGGAAACATATGGCCTTTTTCGTATTCAG
Run BLAST on NCBI

transcript from alignment at sc0000432:146575..154102-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022772 ID=TCONS_00022772|Name=TCONS_00022772|organism=Clytia hemisphaerica|type=transcript|length=7528bp|location=Sequence derived from alignment at sc0000432:146575..154102- (Clytia hemisphaerica)
GATGCCTTTTGTCGGTGAGTAAAACTTTCATCTTAATGTCACTTTTCCCC
TTTTTTGTTGGAATTTTTTTAGTCCCACCTTGAATGTTTTTTTAGATTCC
TTTGGTTCCATTCCTTTGGTTTATACTTTGGTTTATATTTTTTGATGGTT
TTCAGTCGGAATAGGTGACAAAAGCTTTTTAAAAGGGGGTCTCTATCAAT
TTCGTGCAAAAGATTTTCTAGTTGGGCGGGCACTTTGAGAGCTGATATCA
GCCGAAATATTTGCAATATGATTATGAAACTTTGCACACATAAAGTAAAT
ATGTTTAAAAAAATCATTTATTTATTGTGGGAGGATTCTGTAGCTTATCC
CTGCAAACGATATGACTATTTCAAAAATAATTTGAAGCTTTTAAGTACAG
TAGTACAGTTGACGCTCTTTAGTTCAAAGTTCTACTTTTCGATACGCTCC
ATTATTCGATGATATTGAAAGTCACTGTCAAAGAAAAACTCTCATAAAAG
ACCCTCCGTTATTCGATACGCTCCCTATTCGATGAAAATTCAATTCACCT
TTAAATTATATTAAAGAGCGTTAAATGTACTGCAATTTTTACAAGGATTC
TTTAGAATTTTGAAAACAATTACATCAAGAATTAGACTCTAAATTGTTAT
CTTTATTCATTTTATGTAGAGGCAACATTCTTTGACCTTCTCGAACAGCA
GCCAGGACATCGTTTGTGCACACAAGATTCTGTCATCTATCTTGGATCTT
TGGTCAGCCTACTACGGTACCTACACATCGATTGTACTTTGGCTCATTTA
GATCTAAAAGGTATGAGGTAGAGGTGGGCTTATTTCCGGCACACCCGATA
TCTTTAAATGAAATATAAGAAAGGCAATGTCACTGAACTTTACTAGCTAG
CGTCAATACCAATGGACATCAAATACCTATTTCGAGAAAAAATAATAACT
ATTAGCAGAAGATGGCGAAAATTTATATATCTTAATTTTTCATTAAACTA
AAGCATTTTGCTGCCAATTTTCTTTTTTTCAGCTGAAAATATTGGCTTAA
ATGGTAATAAGACAGTCCTTTTGGATTTGGATTCGCTTCAATCGATAGGT
GACCGTTTCTGGCCGTGTGGTACGCCGGGATATGCAGCACAGGAAGTCGT
CAAGGCGGCGCATGATCATTCGATAGCGCAGAAAACGCTCGTCCATTCAT
CTATGGATATGTTTTCCTTTGGGATGCTATTCTTATTTCTGGTGACTGGA
ATACAACCAAGTCTCATCAAGTGTCCAAACCATGGTAACACACCAGATAG
TGACCCTGCATTGTGTGATTGCCAAGATTGTCATGTAAGTACACAATTTT
TTTAACAGCATATTTTTACCATCTCGTAAAGAAAATCATCTTATATAGCC
TTTTAAAGGCAAACGATCGCTCTTGACCTGATAATCATAAATATGGTATG
ACATTAGGGGCGTTCATAGTAAATTCCACAGAAATTGGGCTAGAAAGCTG
AGCAACTCCAGCTCTGAGCCCAAAATCGGGGTTTCTTAAAGAAAGTGTAT
ATACAAATAGTAAACACTAGGAAACAACTGAAAAGCTCTTGTTATGAACA
GAATTTACCAGTCCGACCGCTTAACTTAACTTGTCCATTTTTCAAGGATG
GACTTTGCACTTATCAAGTAATAGATAAGAGAAAAGTTATTTGATGGAGA
TAGTATTGTGTCAAAAAATCGGAAAAATTTGGATCTGTCTTCAAATTTAC
TTTTACTCTTCCAACACTTCATGTTACCTTCACATATATGAAACATGTAT
CTGTAGTGTGGTCGTGTTACAAAAATTTGTTTGTAGGAAAAAAATAGCTG
AAACTTTCTCCAGACCTTCTCTATAGGATGCTTATGCCTCAGGAAAAAAA
TCCCCTAAAATCCCAATAGTGGAACATCCTTTTTTTGGGCAATTTTTTTA
TCCCCTGGCAAAACCCTAAGGGCGAAATTATTTTTGAAAATTTCAAACTC
ATTTTCAGACAATATTATGTATACCATTCCAAAACTCTCGAAAAACTATA
TAGAAAACCTTTAAATGGGTATAGCCGATTTCATTACCTAACTCAAGATA
ATTCACACAGAAGATGCAATTTATGGTCAATTTTAGACCAAAATGTGGCG
AAAAGTTGAACTTTTGCATGAAATATCTCGAGCTGGAGTTCATGCTGGAG
TTCTACAAGGTGACACCTTAGCTCCCTTTCTTTTTATCATTGTTTTAGAT
TATGTTTTAAGAATTTCTGTTGACTTATCTAATGACAAGGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTCTATATGGCTCGGAGACTTGGACCAT
GACAAAAACCATGCTGAAGAGCCTTGATGGCTGCTATACAAATCTTTTGA
AAAGAGTCCAGAATCTTGATTGGCGAAACCACCCAACCCTTCAAGAGATA
TATCATGGACTCCCAAGAATTTCCTCTGTCCTGACTATACTAGCAGGATG
CTCTCTTTCTCAGGTCACTGTTTCCGTGCGAAAAACGAAATGGTGTCTGA
GATCTTACTTTGGTGTCCTGCGGGCACTAGGCGCTCGAGAANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAACTGGGCACTGCAATGGCTGATCGAGAGCTGTGGAGGGAGGG
TTATTGTTTGTTTCCGACCTAGGTCCATTCGGACCTAGGTCGAAGGATGA
TGATGATGATCTCGAGTTAGGTAAGGAAATCGGCTATAATAGCTATATAG
TTTTTTGAGAGCTTTCGAATGGTATACATGATATTGTCTGAAATTTTCAA
GAAAAATTTCGCCCTTAGGGTTTTGCCTAGAAAAAAGAAATTGCCCAAAA
AAGGGATGATCCACCAGTGGGATTTTAGGGGATTTTTCCTGAGGCATAAA
GCATCCTATAGAGAAGGTCTGGAGAAAGTTTCAGCTAGATTTTATTTTTT
CCTGTAAATTGTGCTACTAGTGTTTTATATGAAATATCTGTGGTTACCTT
TTTCCAGGAGATGAAGTGCAATCTACTGAGGAGAGCCATGATGCACGATC
TTCATCCTAATGGTAATGACGAGATTGTCAATTATTTGATGGAAATGTTT
CAACAATGCACAATGGTAAACCTTACATTCATTATTGACACCCACCCCCT
AGCAGTTTGTATGATGGCCTAATTGGGGTTTTTCCTTGCGTACTCTTAGG
CTCCAAATAAACGCCCCCCCCGCTTGTTAATTTTTAGAAAATTTCCAACC
CCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCC
CCCCCCCCCCCGTTTATTAATCTTTAAGAATTTTTTCAGCTTTCAAAGAA
AAGGTCCCTTATTCTGCTCTAAATAGCCTGATTTTAGCCTTATTCTTGGG
TTTTCTCAAGTATAATATCCAACCCCCCCTCCCCAGGCAATTAGGTTCCA
CACCGTTTATTAAAATTTTGAAAATTTTCCAATCCCCTCCTGCTTATTCG
AACCGGTTTATTTGGAATCAAGATTTTGGTGTGCAACGGAAATTTTCACT
ATTTTGCGTGATGGCTAATTTTAGAGGTTTTCGTGATCGTAATGAGAATA
ACCTGAACATCTGTAACATTATCTCTTCTTTTTTATATATTATTGGCGAA
ATGAATAGCATGGTTTGGGCTTTGAGTAGTTGATAACACAGCTAATCAAA
TATTGTTATTTTTTCATTGGTCATACATTCTTAGAAAAATCGCAAGAATT
TGAAGTGGTTTTTTTATTTTATAAGTAAGGAGGGCACTAAATTTGAAACA
CTTCCAACTACAGGTCCAAAACTGGATAGTCTCGTCCTGTGTAAAGCGGA
TTTTTAAAATACAGATTGGGTCTCCTGTCTACGACGAGAGCAATTTTGTT
TTGTGATGGTTTGATATAAGGGGTGCTACGTGGCGGCCTCATTATTCACT
GATAGATTCTCACTTAGCAAATTTCATAGCTCTTTTTTTAATGGCAATCA
TTTTGAACTACAAAAAAGCTGACAGTAAATAGCAACAGCTCTTTTAAGGT
TTTTACATATTTTTACTAAATAATTTTATCAAAATCATGAAATTTACGAA
ACTTGCTGATGGGCATCAATTTCATGAAAATAGGAAAAATAACAGCTTCA
CTTTTTTTTGTTTCTTATAGTATGAACCAGAGAAACGTTGGAACATTGTT
AAAGTACAGACATTTCTTGAATGTCTTATTCGTCAAAATAAAAAGATCTT
TTTGAGAAAGGATCGTGCGGAATTCAAAGCGTGCTATCCAGTCAACCTAA
CGAGCGTCGAAGATTGCCAAAATGGTCTCAAGGTTCTGTAAGTACACTAT
TTGTTATTAAACCAAACTACAGCGAAATATATAGAATCACAATGTGCTCA
AGAAAATTCTAAAAATCCGAGCAAAAAATCAAGAAATAAATAATTAACTT
ACTTGCTTTACGATGTTTCATGCTGTCGCAATCTTCAGACATTGCATTGT
ATTGTAGATTTTATTTGATTTTATTTTTATGAAAAAATTTAGAATACACT
GCATTGCCTAAATATTGTACCAGCGTGAAACATTGTATAGCAATTGTAAG
TCAGTTCCTTATTTCTTAAATCAAACTAGAACAACTCGATAAAGATTCTT
GTAAAGTTTGAATGAATTTTATGAAGTTCCGTGGAAGTTCATTAACGCGA
ATGAGCTACAAGAGGGGAAAGAAACCGTTCGAGCTGAGCCCCCCCCCCCC
GGACAAGCATCTGCTGACCCCACGGACACACCAAATTACCCCCGGACAGA
GCAAATTTACACCCAGGACAAGGCAAATTTTGATGATTTTTTGCTACCCC
CTGGACAATATATCCTTTACCCCCATGTAAAATTTTTTCTGGAAGAGCCC
AATGCTTGTTTTATTTCAAGATAACAAAACAGTTTTCTGTTATGATAAAA
GCTGACGTAGATCTTTCTTTGTCTAAGTTTTTATTACCCATCCAATCAGA
ATGGGGTATAGCGTTATACTCAGTTCCATGCTTCTCTAATGTGTATTGAT
TTACCCGCTCTTAGTCTAGCATGCTAGACGACTTAACTCAGTAAAAAATA
GGAAGTAGAAAACTTGTCAGGAGCATCAATATAGTTTATTTTAACCATAT
CCCGACATAAAAATTTCCCGCTTTCAACTAAAACGTTATAAACGACTGGA
TTCCCAGTCTAACCCGCTCTATAATTTACTCAAATTTTTGGACCTACCCC
GGTGGGGTGAAGGTCCTATAAATTCACCTCTGTCCGTTCGTCCGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNATTTGATTTTTGGTACAAAGGTGCAA
AACAGTGGTGGCCAAAATGTGACGGAGCCCGATTTTCGAAAAAAAAATTT
TTGGGCAAATTTGGGCCAAAAAGATAGCTGTTTTTTTTTTGCTCATGAGG
GCTTACTTTTGACGCATATGTGTTTTTAGACATGAAATTTTGGTTGCTTG
GCGTGTTTTTATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTAGGTATTAGCTTT
TCTCGAGATTGGCTCTTTCATTCTTTATGATTTTTTTCACAAAGATGCAT
AACTATAAACCCTCGAATGTGACTGAGCCCGATTTTCGAAAAAAAATGTT
TTTGGGCAAATTTGGGCCAAAAAACGGCTAAAAAAAGGGTTTTTTGGACT
TTGTGAAATATTGGATCGTTGTTTTTTTTCTGATTTTTTTGCATGAAAGT
AGGTAAAAGATGGGTCAAGCAGATTTTTGTAAAAAAACTTTTCAGTTCAA
AAAGCGCATCTTTATCTATAAGAATCACTATTAATAAGTATACATCAATG
TTCTTAGCCAATTACTCAATTTTTTGATGAGATAGATGTCTTTTTATGCT
CACGAAGTCTTGAATATGAAAGAATATTTCAAGAGCACGAAATTTTGGTT
TCTAAACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTGAATGAT
TGTTTAACGTTCATGCTCACGTAGATAACAATTATATATGTGTTAAATGC
ATAACCAGGTAGGTCCATAAAAGTATCACTTGTTTTTATTCTCTTTATTC
CCAGGTTAATCAATTCCTTCAAAAGACGAAAAAAGGAACGGACATAGATT
CATTGATCCTATCCAAAATTGATCTTATGGTATTCTAATTGCATTATTTT
GGGAACTAAAAAGTCACTGAATTTCCTGTTGCACACTTACAATGGAGTGA
ATGTATCACAAAGCACCGTTGTCGGCTGCTTAGTTTAAACTATTCCAAAC
TAATCAGGATGATAGACATTTTTTTATTTAGGCATAACGCCTTTTCAAGC
AGACTTTTCCATCCGATTGGTAGTTTGCGTGTTTTGTTATTAATTATGGT
TTATGTTATTCTTTTCTATCCAAGAATTTGATAAATTTCTTTTTTAAGAG
GGAAACATATGGCCTTTTTCGTATTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012791XLOC_012791Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022772-exon-sc0000432-1575043694:154089..154102TCONS_00022772-exon-sc0000432-1575043694:154089..154102Clytia hemisphaericaexon
TCONS_00022772-exon-sc0000432-1575043694:153293..153433TCONS_00022772-exon-sc0000432-1575043694:153293..153433Clytia hemisphaericaexon
TCONS_00022772-exon-sc0000432-1575043694:152769..153070TCONS_00022772-exon-sc0000432-1575043694:152769..153070Clytia hemisphaericaexon
TCONS_00022772-exon-sc0000432-1575043694:150488..150595TCONS_00022772-exon-sc0000432-1575043694:150488..150595Clytia hemisphaericaexon
TCONS_00022772-exon-sc0000432-1575043694:146575..146948TCONS_00022772-exon-sc0000432-1575043694:146575..146948Clytia hemisphaericaexon
TCONS_00022772-exon-sc0000432-1510915933:154089..154102TCONS_00022772-exon-sc0000432-1510915933:154089..154102Clytia hemisphaericaexon
TCONS_00022772-exon-sc0000432-1510915933:153293..153433TCONS_00022772-exon-sc0000432-1510915933:153293..153433Clytia hemisphaericaexon
TCONS_00022772-exon-sc0000432-1510915933:152769..153070TCONS_00022772-exon-sc0000432-1510915933:152769..153070Clytia hemisphaericaexon
TCONS_00022772-exon-sc0000432-1510915933:150488..150595TCONS_00022772-exon-sc0000432-1510915933:150488..150595Clytia hemisphaericaexon
TCONS_00022772-exon-sc0000432-1510915933:146575..146948TCONS_00022772-exon-sc0000432-1510915933:146575..146948Clytia hemisphaericaexon
TCONS_00022772-exon-sc0000432-1491911889:154089..154102TCONS_00022772-exon-sc0000432-1491911889:154089..154102Clytia hemisphaericaexon
TCONS_00022772-exon-sc0000432-1491911889:153293..153433TCONS_00022772-exon-sc0000432-1491911889:153293..153433Clytia hemisphaericaexon
TCONS_00022772-exon-sc0000432-1491911889:152769..153070TCONS_00022772-exon-sc0000432-1491911889:152769..153070Clytia hemisphaericaexon
TCONS_00022772-exon-sc0000432-1491911889:150488..150595TCONS_00022772-exon-sc0000432-1491911889:150488..150595Clytia hemisphaericaexon
TCONS_00022772-exon-sc0000432-1491911889:146575..146948TCONS_00022772-exon-sc0000432-1491911889:146575..146948Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000432supercontigsc0000432:146575..154102 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.02204	0.862203	0.407652	0.499143	0.510306	0.392775	0.820049	0.989722	1.13961	2.23907	1.16724	1.96932	2.12975	4.33455	2.05244	1.87753	1.02383	1.59235	2.50928	2.91565	1.07246	1.14219	0.736412	2.75337	0	0	3.10635	2.85003	3.25604	1.48092
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022772 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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