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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022757 ID=TCONS_00022757|Name=TCONS_00022757|organism=Clytia hemisphaerica|type=transcript|length=1945bpRun BLAST on NCBI protein sequence of TCONS_00022757-protein >TCONS_00022757-protein ID=TCONS_00022757-protein|Name=TCONS_00022757-protein|organism=Clytia hemisphaerica|type=polypeptide|length=486bp HVVLAACLLLKPTHQQKTTSNDMLLSTSRGGYDIIWFCLVILCCHWILLERun BLAST on NCBI transcript from alignment at sc0000432:23359..34060+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022757 ID=TCONS_00022757|Name=TCONS_00022757|organism=Clytia hemisphaerica|type=transcript|length=10702bp|location=Sequence derived from alignment at sc0000432:23359..34060+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000432:23359..34060+ >TCONS_00022757 ID=TCONS_00022757|Name=TCONS_00022757|organism=Clytia hemisphaerica|type=CDS|length=18993bp|location=Sequence derived from alignment at sc0000432:23359..34060+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022757 vs. Swiss-Prot (Human)
Match: ERO1B (ERO1-like protein beta OS=Homo sapiens GN=ERO1B PE=1 SV=2) HSP 1 Score: 401.364 bits (1030), Expect = 1.953e-132 Identity = 201/441 (45.58%), Postives = 284/441 (64.40%), Query Frame = 2
Query: 143 LLEATLFSFLSGQVDDCCCSIEDVDKLNTIHINPRLKNLVTRNYFRYFKLNLKRECPFWTDSDQCAVKNCAIDTCSEDELPAGLQGAKPGSHQENKYSKEANTKSKSCSSGDEESLGDVDTTISDEQKESFKVWSTYDDDSS-FCVDLDENGDEAEWVDLLLNPEQYTGYRGRGAYRIWSSIYEENCFLPSKKSRI----------NYADFELNFLSKTCLEKRAFYRTLSGLHASISIHLTYKHILPGSFSTKPRFGPNLDEFKRRFDAETTKGNGPHWLKNLFFTYLLALRAVIKAAPYWKE--VEFYTGDLKEDIEVKKIVMELVNTAQSCPSTFDESQMFLGDTEKARVLKEEFRLHYKNITRIMDCVGCTRCRVWGKLQTTGIGTALKILFSSNDWDEIPIVNGEK-FSLSRTEIVSLFNALNKLSQSLTLVKEFK 1423
L + + + ++G +DDC C I+ +D NT I P++K L R+YFRY+K+NLKR CPFW + C++K+C ++ C E ++P G++ NKY K AN + LG +++T+S++ KE+F W+ YDD FC DE A++VDLLLNPE+YTGY+G A+R+W+SIYEENCF P R + + +L CLEKR FY+ +SGLHASI++HL ++L ++ KP +GPN+ EFK RFD TKG GP LKNL+F YL+ LRA+ K APY++ V+ YTG+ +ED + K +++ + +S P FDE MF GD + A+ LKEEFRLH+KNI+RIMDCVGC +CR+WGKLQT G+GTALKILFS + ++P + K F L+R EIV+L NA +LS S+ ++ FK
Sbjct: 26 FLRSVVEAQVTGVLDDCLCDIDSIDNFNTYKIFPKIKKLQERDYFRYYKVNLKRPCPFWAEDGHCSIKDCHVEPCPESKIPVGIKAG-----HSNKYLKMANNTKELEDCEQANKLGAINSTLSNQSKEAFIDWARYDDSRDHFCELDDERSPAAQYVDLLLNPERYTGYKGTSAWRVWNSIYEENCFKPRSVYRPLNPLAPSRGEDDGESFYTWLEGLCLEKRVFYKLISGLHASINLHLCANYLLEETWG-KPSWGPNIKEFKHRFDPVETKGEGPRRLKNLYFLYLIELRALSKVAPYFERSIVDLYTGNAEEDADTKTLLLNIFQDTKSFPMHFDEKSMFAGDKKGAKSLKEEFRLHFKNISRIMDCVGCDKCRLWGKLQTQGLGTALKILFSEKEIQKLPENSPSKGFQLTRQEIVALLNAFGRLSTSIRDLQNFK 460 The following BLAST results are available for this feature:
BLAST of TCONS_00022757 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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