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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022745 ID=TCONS_00022745|Name=TCONS_00022745|organism=Clytia hemisphaerica|type=transcript|length=7111bpRun BLAST on NCBI transcript from alignment at sc0000431:194402..217500- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022745 ID=TCONS_00022745|Name=TCONS_00022745|organism=Clytia hemisphaerica|type=transcript|length=23099bp|location=Sequence derived from alignment at sc0000431:194402..217500- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00022745 vs. Swiss-Prot (Human)
Match: ALS (Insulin-like growth factor-binding protein complex acid labile subunit OS=Homo sapiens GN=IGFALS PE=1 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 9.610e-30 Identity = 110/389 (28.28%), Postives = 185/389 (47.56%), Query Frame = 1
Query: 7 LKPRSFYNLPKLEEIHLSSARIGDLIGNAFESLPMLRLLNLAYNQFTQVPEDFFQKVKDLEEVRLTGNRLSSLKKGTFNNMTKLRKLSLDLNRFTSIDKALFSQVTSLTDLNLASNKLKSIPED--LTKGNLERLDLSYNNPMKTFPIIARGSK-LKELDLMDCEIGSVNGNQLRNLVHLTKLRLNRNQLKEIVPNTYSNLKNIKELNLLGNQIKTVQPESFKNLENLEILNLGRNEIKSIPKDTFKGLKKLVELSLIGNTVQGLPDNEIFKDLVRMERLFLSKMKLNGIPAGTFEKLKSLQELYANDNSLSKIGKNDLHHLTNLKVLQLDTNYFTEIKADFLIMNTNLEELYMSEQIDQKLTEIDPYAFKNNKKLQRIYLRKNKLEEL 1164
L+P++ L L +HL ++ L F P L L L+ N+ +++ + F+ + L ++ L N L+ L F + LR+L L NR + ALFS + L +L+L+ N L++I + + L++L L N P G K L+ LDL + + + L+ L LRL+ N + + P T+ +L ++EL L N+I+ + SF+ L LE+L L N+++ + F GL + ++L GN ++ LP+ ++F+ L ++ L L L I TF L L+ L+ DN L I + L L L L L +N T + LE L +S +L E+ A ++ + + N+LE L
Sbjct: 113 LEPQALLGLENLCHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQPALFSGLAELRELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLTNVAVMNLSGNCLRNLPE-QVFRGLGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLELDLTSNQLTHLPHRLFQGLGKLEYLLLSR---NRLAELPADALGPLQRAFWLDVSHNRLEAL 497 HSP 2 Score: 126.716 bits (317), Expect = 1.917e-29 Identity = 111/385 (28.83%), Postives = 176/385 (45.71%), Query Frame = 1
Query: 91 AFESLPMLRLLNLAYNQFTQVPEDFFQKVKDLEEVRLTGNRLSSLKKGTFNNMTKLRKLSLDLNRFTSIDKALFSQVTSLTDLNLASNKLKSIPEDLTK--GNLERLDLSYNNPMKTFPIIARG-SKLKELDLMDCEIGSVNGNQLRNLVHLTKLRLNRNQLKEIVPNTYSNLKNIKELNLLGNQ------------------------IKTVQPESFKNLENLEILNLGRNEIKSIPKDTFKGLKKLVELSLIGNTVQGLPDNEIFKDLVRMERLFLSKMKLNGIPAGTFEKLKSLQELYANDNSLSKIGKNDLHHLTNLKVLQLDTNYFTEIKADFLIMNTNLEELYMSEQIDQKLTEIDPYAFKNNKKLQRIYLRKNKLEEL 1164
AF++L L LNL Q + +++L + L N+L SL GTF + L L L NR + ++ LF + SL DLNL N L +P+ + G+L L L+ N P + G ++L+ELDL + ++ N L L KL L+RN + + P + LK ++ L+L N+ I +++P +FK+L LE L LG N I+ + + +F+GL +L L+L N +Q + F L + + LS L +P F L L L+ + L +I + L+ L+ L L N I+ L L EL + +LT + F+ KL+ + L +N+L EL
Sbjct: 93 AFQNLSSLGFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQPALFSGLAELRELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGA-FLGLTNVAVMNLSGNCLRNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSL---WGLAELLELDLTSNQLTHLPHRLFQGLGKLEYLLLSRNRLAEL 473 HSP 3 Score: 94.7449 bits (234), Expect = 2.229e-19 Identity = 82/280 (29.29%), Postives = 128/280 (45.71%), Query Frame = 1
Query: 346 ASNKLKSIPEDLTKGNLERLDLSYNNPMKTFPIIARG--SKLKELDLMDCEIGSVNGNQLRNLVHLTKLRLNRNQLKEIVPNTYSNLKNIKELNLLGNQIKTVQPESFKNLENLEILNLGRNEIKSIPKDTFKGLKKLVELSLIGNTVQGLPDNEIFKDLVRMERLFLSKMKLNGIPAGTFEKLKSLQELYANDNSLSKIGKNDLHHLTNLKVLQLDTNYFTEIKADFLIMNTNLEELYMSEQIDQKLTEIDPYAFKNNKKLQRIYLRKNKLEELNEHIF 1179
+S L +P D G + L L NN + + P A S L L+L ++GS+ L L +L L L RNQL+ + T+++ + L L N++ ++ F+ L +L LNLG N + +P F+GL L EL L GN + L +F L + L LS+ L I A F +L LQ+LY + N ++ + L L+ L L N + D L L +S + + P FK+ L+ + L N++ +L E F
Sbjct: 61 SSRNLTRLP-DGVPGGTQALWLDGNN-LSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYL-QPALFSGLAELRELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSH---NAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSF 334 HSP 4 Score: 90.1225 bits (222), Expect = 6.283e-18 Identity = 80/303 (26.40%), Postives = 132/303 (43.56%), Query Frame = 1
Query: 7 LKPRSFYNLPKLEEIHLSSARIGDLIGNAFESLPMLRLLNLAYNQFTQVPEDFF---------------------QKVKDL---EEVRLTGNRLSSLKKGTFNNMTKLRKLSLDLNRFTSIDKALFSQVTSLTDLNLASNKLKSIPEDLTKGNLERLDLSYNNPMKTFPIIARGSKLKELDLMDCEIGSVNGNQLRNLVHLTKLRLNRNQLKEIVPNTYSNLKNIKELNLLGNQIKTVQPESFKNLENLEILNLGRNEIKSIPKDTFKGLKKLVELSLIGNTVQGLPDNEIFKDLVRMERLFL 843
+K F LP+L++++L I + AF L LR L+L++N+ + ED F + KDL EE++L NR+ L + +F + +L L+LD N+ + F +T++ +NL+ N L+++PE + +G KL L L +G + + L L +L L N L I + L + EL+L NQ+ + F+ L LE L L RN + +P D L++ L + N ++ LP N + L R+ L L
Sbjct: 233 IKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLTNVAVMNLSGNCLRNLPEQVFRGL---------------------GKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLELDLTSNQLTHLPHRLFQGLGKLEYLLLSRNRLAELPADALGPLQRAFWLDVSHNRLEALP-NSLLAPLGRLRYLSL 513 The following BLAST results are available for this feature:
BLAST of TCONS_00022745 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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