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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022706 ID=TCONS_00022706|Name=TCONS_00022706|organism=Clytia hemisphaerica|type=transcript|length=2642bpRun BLAST on NCBI protein sequence of TCONS_00022706-protein >TCONS_00022706-protein ID=TCONS_00022706-protein|Name=TCONS_00022706-protein|organism=Clytia hemisphaerica|type=polypeptide|length=620bp MMHKARDQAGREKYGSKKLEKPKITTLPPDKVPKEDPELADEILDKTTGIRun BLAST on NCBI transcript from alignment at sc0000431:53680..65768- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022706 ID=TCONS_00022706|Name=TCONS_00022706|organism=Clytia hemisphaerica|type=transcript|length=12089bp|location=Sequence derived from alignment at sc0000431:53680..65768- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000431:53680..65768- >TCONS_00022706 ID=TCONS_00022706|Name=TCONS_00022706|organism=Clytia hemisphaerica|type=CDS|length=22356bp|location=Sequence derived from alignment at sc0000431:53680..65768- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022706 vs. Swiss-Prot (Human)
Match: PLK1 (Serine/threonine-protein kinase PLK1 OS=Homo sapiens GN=PLK1 PE=1 SV=1) HSP 1 Score: 662.144 bits (1707), Expect = 0.000e+0 Identity = 330/587 (56.22%), Postives = 426/587 (72.57%), Query Frame = 3
Query: 249 KEDPELADEILDKTTGIKYKRGRFLGKGGFAKCYEMTNMETKVLYAGKIVPKSLLTKSHQRDKMAQEIQIHRELKYKHVVGFVSYFEDPHYVYIILELCRKRSMMELHKRRKALTEPEVRFYMKQIVDACIFLHNKHIIHRDLKLGNLFLNDDFQVKIGDYGLATRVDFDGERKKTLCGTPNYIAPEVLYKKGHSFEVDVWSVGCILYTLLVGKPPFETTSLKETYHRIKKNEYYIPARVPQSAQMLIIKMLRPDPCTRPTMKEVRADRFFEEGYTPSSLPNSCLTMAPRFKESQHQTSTTTDRRPLGEANRDLKLLSSIPESKMAAEKNNVSRAVFVKDGMGHXXXXXXXXXXXXGKDFYLSSLHKILLKTIQSKPSDKEAHNFGEAEDPALTPVTWISKWVDYSDKYGIGYNLSDGSVGVLFNDATRLLMNENEKNMQYIDKHNHESFFTIDKTPEKLNKKKTLLEYFHNYMSENLLKAGSGVTPQPQDS-ARLPFLRAWFRTREAIVLHLNIGILQINFFQDHTKVIICPKMEAVTYIDQDRNFNTYKLSAIEEYGCKFEIFTRLKYAKTMVERLQRKLSGDDQ 2006
KE PE+ ++D + +Y RGRFLGKGGFAKC+E+++ +TK ++AGKIVPKSLL K HQR+KM+ EI IHR L ++HVVGF +FED +V+++LELCR+RS++ELHKRRKALTEPE R+Y++QIV C +LH +IHRDLKLGNLFLN+D +VKIGD+GLAT+V++DGERKKTLCGTPNYIAPEVL KKGHSFEVDVWS+GCI+YTLLVGKPPFET+ LKETY RIKKNEY IP + A LI KML+ DP RPT+ E+ D FF GY P+ LP +CLT+ PRF + + ++R+PL N+ L+ + +PE E+ V V D +LS + + L SKPS++ EAEDPA P+ W+SKWVDYSDKYG+GY L D SVGVLFND+TRL++ + ++QYI++ ES+ T+ P L KK TLL+YF NYMSE+LLKAG+ +TP+ D ARLP+LR WFRTR AI+LHL+ G +QINFFQDHTK+I+CP M AVTYID+ R+F TY+LS +EEYGC E+ +RL+YA+TMV++L S ++
Sbjct: 38 KEIPEV---LVDPRSRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFFTSGYIPARLPITCLTIPPRFSIAP-SSLDPSNRKPLTVLNKGLE--NPLPERPREKEEPVVRETGEVVDC-------------------HLSDMLQQLHSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERDGTESYLTVSSHPNSLMKKITLLKYFRNYMSEHLLKAGANITPREGDELARLPYLRTWFRTRSAIILHLSNGSVQINFFQDHTKLILCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRLRYARTMVDKLLSSRSASNR 599 The following BLAST results are available for this feature:
BLAST of TCONS_00022706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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