|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022703 ID=TCONS_00022703|Name=TCONS_00022703|organism=Clytia hemisphaerica|type=transcript|length=963bp
AAATCGTGTACTCATCAAAACGTGAACTTCTGTGATTTTCCCATCACACA
AATATTTTAATATCCCCAAAATATGGCTACTAAAAGTTCGCCCCTTGTTT
GGAACGATGAAAGAGAAGTTCATTTATTACGAGAAGTGCTGGTCAGTCAG
CCTCATCAATTCAAAGAGAAAACCAGAGAAAGAGGTGAAAAATGGCAGCA
GATTTCTAACAATCTCAACAAGTCTGACCTTTTCCAAAACAAGCTTTCTG
CTAGATCAGTACGAGAAAAAACAAATGGTCTTGTCTCACGATTTCGATCA
ACTCAACGAGCTGAGTTAGCAGCAACAGGAATAAATCCAGAACAATCCGA
AACtgatgttttattggaagagaTTTGCTTGCAAATTGATGAGTTTGCAC
GCCAAATTGCTGAAAACAACACAAAAGCCAAGGATGCAGAACGTGATAAA
ATTCAAGGTGAAGAAATAAGGAAAAAGGCAATGGAGACTCAATGCCAAAC
TATAAAACGAAAAACTGGTAACCAAGAGGATGATGACGATGATAACAACA
AGAAGAAAAAGTCTCGATCTTCTGGCAGCGACACCGTTAGCTTTCTGAGA
GAAAAAGCCCATATCGAATCAAAATTTAAGGAGCAGGAATTAGAtcttca
gaaaaaaagattagaACTTGATGCAGCCAAAATTCAAAGTGACCAAAACA
ATTTTAACAATATGTTATTGCTGATGAGCAATCAAATGGAACAGAACCAA
CAGCTAACCATGTCAATGCTTGAAAGGCTAAAAGGACCAAAATGAATACG
ATAAATTAACTTTTGGTTTTTATGGTATGGACTATTTATATTTCGAAGAA
GATGAACTATTCTTTTGGTTTTATGGACTATTTACAAACTTATGTTTCAA
AGAAGATGAACTATTTTTTGGTTTTATGGGGCCTTTATGGACTATTTACA
AACTTATGATCct Run BLAST on NCBI protein sequence of TCONS_00022703-protein >TCONS_00022703-protein ID=TCONS_00022703-protein|Name=TCONS_00022703-protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
MATKSSPLVWNDEREVHLLREVLVSQPHQFKEKTRERGEKWQQISNNLNK
SDLFQNKLSARSVREKTNGLVSRFRSTQRAELAATGINPEQSETDVLLEE
ICLQIDEFARQIAENNTKAKDAERDKIQGEEIRKKAMETQCQTIKRKTGN
QEDDDDDNNKKKKSRSSGSDTVSFLREKAHIESKFKEQELDLQKKRLELD
AAKIQSDQNNFNNMLLLMSNQMEQNQQLTMSMLERLKGPK Run BLAST on NCBI transcript from alignment at sc0000431:254944..256269+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022703 ID=TCONS_00022703|Name=TCONS_00022703|organism=Clytia hemisphaerica|type=transcript|length=1326bp|location=Sequence derived from alignment at sc0000431:254944..256269+ (Clytia hemisphaerica)
AAATCGTGTACTCATCAAAACGTGAACTTCTGTGATTTTCCCATCACACA
AATATTTTAATATCCCCAAAATATGGCTACTAAAAGGTAAGTTTTATTAA
TTCTAGTTGCTTTAACTTATTATCCATGCATAGATATGaacttattttgt
ttttatataaaaaaagctgGTGGTTTTATACAcagaaatgtcaaatttct
ttatacatatttttctttatctacAAAGTTTACAAAGATTATAGATCTTG
TAATAAAACTtgtataaaaactttataatgtACTGAAACTTTTTCAAAGC
CTACgtaaaaaagcaaataaaaataactgaTGTTTTAAGAGGAAATTTAT
AGAATTAATAGCATGTCAATTTGTGATTACAAATTTTTCCTGAGTTTGAT
AGGCTTTAAACACGTTCTAAACAAAGTCAATCCCTTTTACCTTTTTTAGT
TCGCCCCTTGTTTGGAACGATGAAAGAGAAGTTCATTTATTACGAGAAGT
GCTGGTCAGTCAGCCTCATCAATTCAAAGAGAAAACCAGAGAAAGAGGTG
AAAAATGGCAGCAGATTTCTAACAATCTCAACAAGTCTGACCTTTTCCAA
AACAAGCTTTCTGCTAGATCAGTACGAGAAAAAACAAATGGTCTTGTCTC
ACGATTTCGATCAACTCAACGAGCTGAGTTAGCAGCAACAGGAATAAATC
CAGAACAATCCGAAACtgatgttttattggaagagaTTTGCTTGCAAATT
GATGAGTTTGCACGCCAAATTGCTGAAAACAACACAAAAGCCAAGGATGC
AGAACGTGATAAAATTCAAGGTGAAGAAATAAGGAAAAAGGCAATGGAGA
CTCAATGCCAAACTATAAAACGAAAAACTGGTAACCAAGAGGATGATGAC
GATGATAACAACAAGAAGAAAAAGTCTCGATCTTCTGGCAGCGACACCGT
TAGCTTTCTGAGAGAAAAAGCCCATATCGAATCAAAATTTAAGGAGCAGG
AATTAGAtcttcagaaaaaaagattagaACTTGATGCAGCCAAAATTCAA
AGTGACCAAAACAATTTTAACAATATGTTATTGCTGATGAGCAATCAAAT
GGAACAGAACCAACAGCTAACCATGTCAATGCTTGAAAGGCTAAAAGGAC
CAAAATGAATACGATAAATTAACTTTTGGTTTTTATGGTATGGACTATTT
ATATTTCGAAGAAGATGAACTATTCTTTTGGTTTTATGGACTATTTACAA
ACTTATGTTTCAAAGAAGATGAACTATTTTTTGGTTTTATGGGGCCTTTA
TGGACTATTTACAAACTTATGATCct Coding sequence (CDS) from alignment at sc0000431:254944..256269+ >TCONS_00022703 ID=TCONS_00022703|Name=TCONS_00022703|organism=Clytia hemisphaerica|type=CDS|length=1446bp|location=Sequence derived from alignment at sc0000431:254944..256269+ (Clytia hemisphaerica)
ATGGCTACTAAAAGTTCGCCCCTTGTTTGGAACGATGAAAGAGAAGTTCA
TTTATTACGAGAAGTGCTGGTCAGTCAGCCTCATCAATTCAAAGAGAAAA
CCAGAGAAAGAGGTGAAAAATGGCAGCAGATTTCTAACAATCTCAACAAG
TCTGACCTTTTCCAAAACAAGCTTTCTGCTAGATCAGTACGAGAAAAAAC
AAATGGTCTTGTCTCACGATTTCGATCAACTCAACGAGCTGAGTTAGCAG
CAACAGGAATAAATCCAGAACAATCCGAAACtgatgttttattggaagag
aTTTGCTTGCAAATTGATGAGTTTGCACGCCAAATTGCTGAAAACAACAC
AAAAGCCAAGGATGCAGAACGTGATAAAATTCAAGGTGAAGAAATAAGGA
AAAAGGCAATGGAGACTCAATGCCAAACTATAAAACGAAAAACTGGTAAC
CAAGAGGATGATGACGATGATAACAACAAGAAGAAAAAGTCTCGATCTTC
TGGCAGCGACACCGTTAGCTTTCTGAGAGAAAAAGCCCATATCGAATCAA
AATTTAAGGAGCAGGAATTAGAtcttcagaaaaaaagattagaACTTGAT
GCAGCCAAAATTCAAAGTGACCAAAACAATTTTAACAATATGTTATTGCT
GATGAGCAATCAAATGGAACAGAACCAACAGCTAACCATGTCAATGCTTG
AAAGGCTAAAAGGACCAAAATGAATGGCTACTAAAAGTTCGCCCCTTGTT
TGGAACGATGAAAGAGAAGTTCATTTATTACGAGAAGTGCTGGTCAGTCA
GCCTCATCAATTCAAAGAGAAAACCAGAGAAAGAGGTGAAAAATGGCAGC
AGATTTCTAACAATCTCAACAAGTCTGACCTTTTCCAAAACAAGCTTTCT
GCTAGATCAGTACGAGAAAAAACAAATGGTCTTGTCTCACGATTTCGATC
AACTCAACGAGCTGAGTTAGCAGCAACAGGAATAAATCCAGAACAATCCG
AAACtgatgttttattggaagagaTTTGCTTGCAAATTGATGAGTTTGCA
CGCCAAATTGCTGAAAACAACACAAAAGCCAAGGATGCAGAACGTGATAA
AATTCAAGGTGAAGAAATAAGGAAAAAGGCAATGGAGACTCAATGCCAAA
CTATAAAACGAAAAACTGGTAACCAAGAGGATGATGACGATGATAACAAC
AAGAAGAAAAAGTCTCGATCTTCTGGCAGCGACACCGTTAGCTTTCTGAG
AGAAAAAGCCCATATCGAATCAAAATTTAAGGAGCAGGAATTAGAtcttc
agaaaaaaagattagaACTTGATGCAGCCAAAATTCAAAGTGACCAAAAC
AATTTTAACAATATGTTATTGCTGATGAGCAATCAAATGGAACAGAACCA
ACAGCTAACCATGTCAATGCTTGAAAGGCTAAAAGGACCAAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022703-exon-sc0000431-1491911889:254944..255029 | TCONS_00022703-exon-sc0000431-1491911889:254944..255029 | Clytia hemisphaerica | exon |
| TCONS_00022703-exon-sc0000431-1510915933:254944..255029 | TCONS_00022703-exon-sc0000431-1510915933:254944..255029 | Clytia hemisphaerica | exon |
| TCONS_00022703-exon-sc0000431-1575043694:254944..255029 | TCONS_00022703-exon-sc0000431-1575043694:254944..255029 | Clytia hemisphaerica | exon |
| TCONS_00022703-exon-sc0000431-1491911889:255393..256269 | TCONS_00022703-exon-sc0000431-1491911889:255393..256269 | Clytia hemisphaerica | exon |
| TCONS_00022703-exon-sc0000431-1510915933:255393..256269 | TCONS_00022703-exon-sc0000431-1510915933:255393..256269 | Clytia hemisphaerica | exon |
| TCONS_00022703-exon-sc0000431-1575043694:255393..256269 | TCONS_00022703-exon-sc0000431-1575043694:255393..256269 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000431 | supercontig | sc0000431:254944..256269 + |
Blast
The following BLAST results are available for this feature:
|
