TCONS_00022698 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022698
Unique NameTCONS_00022698
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1579

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022698 ID=TCONS_00022698|Name=TCONS_00022698|organism=Clytia hemisphaerica|type=transcript|length=1579bp
GGTCAATTAGTCACATAAACATAATAAACAACATCAAAACTCATTTCATT
TTATGCATGGATTTAACTTTTTATACTGACTTTGAATGTTTTCAAGCAAG
ACTATCTACTTTGAAAATATTCCCGCAATAACAAACAGCAAAAACACACG
TTTCATTTCGAATCATCAGCCTAGCACTACACCAAAATCTCCACCACTCT
ACTCCAGTCACCTCACTCGACTAGTAAATTGAATATCACAATGAAGTATT
CACTTATTTTACTTGTAATCTCATGCATATCACTTTCCTTGTGTACTGAT
ACTGTAAAGATTGATATCATTGATAGACCAAAGGACTGCAAGAGAATTGC
CAAAGCTGGAGACAAAGTTTCAATGCATTATGATGGAACCTTATTGAGTG
GAAAGCCATTTGACAGCAGCAGAAGCAGAAACACACCTTTTGATTTTGTA
TTAGGAAAACAACAAGTAATCAAGTGTTGGGATGAGTCCATCCCACAGAT
GTGTGTTGGTGAAAAACGAAGATTGACTTGTCCACCTGAATATGCCTATG
GTGACCGTGGATTCGGAGATATCATTCCAGCCAAATCAACATTAGTTTTT
GAGGTTGAACTTTTGGACATTCTTTCATCTGCATCTGGCTCttcaacaaa
aaaagaagagaCACCAAAAAAAGAAGAACCAAAAACAGAAACTGAACCAG
CAGAAGAAGAAGCACACCCAGAACACGACCACCCAGACTCTTTTGAATCT
GTTGACAAAGATGGTAATGGTGAAATCACACGTGAAGAGATGACTGCTTA
TATCAAGAGCTACTCTGAACAGGAAGATGGAGAAAATATGCCAGAAGAtg
aagaaatcaaaacattgatcagTGAAATTTTCCAATCTGACGACacaaac
aaagatggtagcctAAGCAAGGAGGAATATTACCACGGACAAGAACAAGC
TGCAAAAGATGCTGAGGGTATGGATCATGTCGATGATGCTGACTTGAGAG
ATGAACTTTAAATGTTTATTATGtagaatttttttggaatttgaaacatt
tttattcTGTTTTCTGTATTTTTAACATCATTGACATTAATCTTGAACTT
TAAAAACACGTTTATAGGTTTAGACAAGTCTTAAATTACACACTTTTAAG
TGTATGATTGTTTCTCTATCATCTTCCTTtacttccaacctaatttattC
ACCCTGTCCGATACTTCGCCTATCTTTAATGCTACTCTTAGCATCGTGCT
Ctctcgttattttttttttaatttagtcttatttcaatttgatttttttt
aattatttagaaccgtattatttaaattttttgttccatgcatttttaat
taaatgttgttgttaatttttttatctggGATTTGTTGTGAACAGTTTTT
AGTCACATGACCATGCATTTAACATAATTACCATTtatgtattttgaaaa
atttgtttacaaaaaaaaatgaaaataagagaGACATGAAATAATGCGTA
GTAATTATTCTGAAATTTTTGGGGCTATTTTGTAATGTGGTACCTAAGGC
CACTCCCACCACCTTTTGAATTTACTGGG
Run BLAST on NCBI

protein sequence of TCONS_00022698-protein

>TCONS_00022698-protein ID=TCONS_00022698-protein|Name=TCONS_00022698-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
MKYSLILLVISCISLSLCTDTVKIDIIDRPKDCKRIAKAGDKVSMHYDGT
LLSGKPFDSSRSRNTPFDFVLGKQQVIKCWDESIPQMCVGEKRRLTCPPE
YAYGDRGFGDIIPAKSTLVFEVELLDILSSASGSSTKKEETPKKEEPKTE
TEPAEEEAHPEHDHPDSFESVDKDGNGEITREEMTAYIKSYSEQEDGENM
PEDEEIKTLISEIFQSDDTNKDGSLSKEEYYHGQEQAAKDAEGMDHVDDA
DLRDEL
Run BLAST on NCBI

transcript from alignment at sc0000431:65945..73178+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022698 ID=TCONS_00022698|Name=TCONS_00022698|organism=Clytia hemisphaerica|type=transcript|length=7234bp|location=Sequence derived from alignment at sc0000431:65945..73178+ (Clytia hemisphaerica)
GGTCAATTAGTCACATAAACATAATAAACAACATCAAAACTCATTTCATT
TTATGCATGGATTTAACTTTTTATACTGACTTTGAATGTTTTCAAGCAAG
ACTATCTACTTTGAAAATATTCCCGCAATAACAAACAGCAAAAACACACG
TTTCATTTCGAATCATCAGCCTAGCACTACACCAAAATCTCCACCACTCT
ACTCCAGTCACCTCACTCGACTAGTAAATTGAATATCACAATGAAGTATT
CACTTATTTTACTTGTAATCTCATGCATATCACTTTCCTTGTGTACTGAT
ACTGTAAAGATTGATATCATTGATAGACCAAAGGACTGCAAGAGGTATCT
ATGCATGCAGCATgctgctgttttttttttaactttttaagaaTCATTTT
AACATATAATAAACTTTTTGTATAATTTAAACTTTCCATCAAGCTTTtaa
taaatactgtaatttggtctaatgtcgacataccTCAtgtaattctgaca
cccttttaAGATGATTAaaaggaaggtcggaatcactgattgaaaaaaaa
atgcgttcCTCTCTGACTGGCAGTTGGGTgtttttaagataaaaccaGAC
AATGTCAATCAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNgcaagttttggaagagatatgaagaataaacctcaaaaaagct
gattttttggtaaaaaagcccccccgggcagttttttgggctggaattcg
tcaaaaatgcgtaaaattaattttttttttttttaaatgtcttctatcat
tatatggaacagaaaaaacaccaggcgaagaagatctgaagatacccccc
aaaaaagttactctaccccctacccctattggcattcgattgcgttgggc
aatcaaatttcaatcattcaattgcgttcaattgattcggcgttcgattc
gttcaattgacatcgtctggataAAAGCAGCAATTATTGCCGAAAGCGGC
AATTTTTTtgacgatgaaatgctgaatcagcagaaaaataagaaaagtaa
ataaataaaaattgttgtttttggCGCAATACaactttcccgtaattcaa
acttctcagaaatggcccggtaaaatgtgcgctccaccgttgtgtataaa
attgtttgggaggtaaacgaaCGCGTTTTTGCCAGCGAAAGGTTAGGGAA
GGTGGGTTTttagcttctaacttttgataacgatcttcttttggcaaaag
attttcagggtggcataatatcatgaatagattgaacatactaaaatttg
agggaattttgtttgacagaacttaggaaaagctaaaaaaaacaactttc
cctaaggaaacgcaggcaaaaacgggtttgtttacttccagagaccaaac
agtggagagcatcaaaataaggcgcattagttttacgaattatgggaaag
gtgtattaatgTCGTTTTTATGgaaagaaaagttgattttattattgaac
acatGGTATTTAACACCCTCACGATAAGTAGacccactgtgcctcgttta
gttttgttttcaactggtttttgttggaaatgcataCAAACTTACAGCGG
GGgctttgttatctctttctggctgtgtttcaaCATCAATGCAGGATCTt
tttacatattattttagaacttttcatgttattgagcaatgaaaaattga
aagaatcacttttaaaaatccaaaaaacctttttctcaaatacaatttta
caattttcaaacacctctgacatctttgcccttataaggacaacacattt
tgctgattcagcatttaatagttgaaaaaattgccaaaaagaacaataac
tgcagtttttatcttaaacacccaactgacTGGTTTATTAGCTATCAGCC
ATTCTGACCTTTCCATTATTCCCAGGTTGAAAGAGGGGTGTCGGAATTAG
CTAAGGGATTTTGACAATAGACCAACTTGCAATATAATGGTTTCAACACT
GTAAAGTATTTTTGGGAAACATGAATTTGGAAGTTAAGACTAAGGATGGG
GATGATTCTGTGgtgcaaataaggaaatttcagttggccCGTAATTTTGG
GAGCATATAACTGCTATTCACCGGCTGctatttgcagcactgaagATACT
ACATgttatcttactatactaagaTATATGGCAAGGTCTTAGTATGCTAA
AGTTAAACACAACAAcaataattttctttgttctACAGAATTGCCAAAGC
TGGAGACAAAGTTTCAATGCATTATGATGGAACCTTATTGAGTGGAAAGC
CATTTGACAGCAGCAGAAGCAGAAACACACCTTTTGATTTTGTATTGGGA
AAACAACAAGTAATCAAGTGTNgcgcattagttttacgaattatgggaaa
ggtgtattaatgTCGTTTTTATGgaaagaaaagttgattttattattgaa
cacatGGTATTTAACACCCTCACGATAAGTAGacccactgtgcctcgttt
agttttgttttcaactggtttttgttggaaatgcataCAAACTTACAGCG
GGGgctttgttatctctttctggctgtgtttcaaCATCAATGCAGGATCT
TTTTAcgtattattttagaacttttcatgttattgagcaatgaaaaattg
aaagaatcacttttgaaaatccaaaaaacctttttctcaaatacaatttt
acaattttcaaacacctctgacatctttgcccttataaggacaacacatt
ttgctgattcagcatttaatagttgaaaaaattgccaaaaagaacaataa
ctgcagtttttatcttaaacacccaactgacTGGTTTATTAGCTATCAGC
CATTCTGACCTTTCCATTATTCCCAGGTTGAAAGAGGGGTGTCGGAATTA
GCTAAGGGATTTTGACAATAGACCAACTTGCAATATAATGGTTTCAACAC
TGTAAAGTATTTTTGGGAAACATGAATTTGGAAGTTAAGACTAAGGATGG
GGATGATTCTGTGgtgcaaataaggaaatttcagttggccCGTAATTTTG
GGAGCATATAACTGCTATTCACCGGCTGctatttgcagcactgaagATAC
TACATgttatcttactatactaagaTATATGGCAAGGTCTTAGTATGCTA
AAGTTAAACACAACAAcaataattttctttgttctACAGAATTGCCAAAG
CTGGAGACAAAGTTTCAATGCATTATGATGGAACCTTATTGAGTGGAAAG
CCATTTGACAGCAGCAGAAGCAGAAACACACCTTTTGATTTTGTATTAGG
AAAACAACAAGTAATCAAGTGTTGGGATGAGTCCATCCCACAGATGTGTG
TTGGTGAAAAACGAAGATTGACTTGTCCACCTGAATATGGTAAAaccatt
tttttttcgaaaccaaTTTTCTGACTTTACAGAATCCAACATTTTACTAA
CCTGAGATTAGATTGTGATcattttctgcccaccacgctgaggCTCTAAA
GGGATtcgtgaaaacataacaatctgacgattATGCAATCTCCAAATTTT
AGGGAAATTTTTAAGCTCTTCTAAAAGGACTGAGAATGAGAACAGAGTTG
TGTGATTGTGTTTGAAAATAGAGCACCATATCAGGTAAATTTGGTCTTTG
ACTTtacggcgcacaacaagattcttgttgtagaattttcacgggaggac
tattttcctcagatgatggttaattttcaagtgccttcagagatTTACTG
TGCGCACCTGAAAATTATGACCAACTGTTATCAGGTTTCTAACCCTCTAA
GAAATATAATATACAAGTTAATtggaaaagaaatcaaattataatagctg
cattctttttcaccagTTTTCACCAACATATAAATGTGAATGTAGAATCT
TCATAACAATTGTTGTCGTTTCAGCCTATGGTGACCGTGGATTCGGAGAT
ATCATTCCAGCCAAATCAACATTAGTTTTTGAGGTTGAACTTTTGGACAT
TCTTTCATCTGCATCTGGCTCttcaacaaaaaaagaagagaCACCAAAAA
AAGAAGAACCAAAAACAGAAACTGAACCAGCAGAAGAAGAAGCACACCCA
GAACACGACCACCCAGACTCTTTTGAATGTAAGTTGCTTCATTTTATATA
GCTTTGAATGTGATTTTGTCGCTGAAATGACCAGAGTGCAATGTTTTAAT
CAGCTTGGCTCCACTAACTCTTCattaaaatttatcattaaGTAAAAGag
attttctcaattttctaTTTCAGCTGTTGACAAAGATGGTAATGGTGAAA
TCACACGTGAAGAGATGACTGCTTATATCAAGAGCTACTCTGAACAGGAA
GATGGAGAAAATGtaagacttaaattttgatgtataaaTGGGAATAAACT
AGAAACATTTTCAGTAATATGTTTTAGTTTTGGCTTAATTATATCACGAA
ACTGCATgcttttgctgtttttaatgcGTTGGCCGTTGAAGATTGGATAG
GATGTTTTTTAGAGGTACTGACACTTAGAGTCTTGGTCCTTTCCCACTAG
AAAGTGGCATCCGGCTATTAGCATGGACAAACTCCATTCCATCATATCCC
AGTCCTAACATACTCTCTATTTCTACATTTTCTCCTATTCAGATGCCAGA
AGAtgaagaaatcaaaacattgatcagTGAAATTTTCCAATCTGACGACa
caaacaaagatggtagcctAAGCAAGGAGGAATATTACCACGGACAAGAA
CAAGCTGCAAAAGATGCTGAGGGTATGGATCATGTCGATGATGCTGACTT
GAGAGATGAACTTTAAATGTTTATTATGtagaatttttttggaatttgaa
acatttttattcTGTTTTCTGTATTTTTAACATCATTGACATTAATCTTG
AACTTTAAAAACACGTTTATAGGTTTAGACAAGTCTTAAATTACACACTT
TTAAGTGTATGATTGTTTCTCTATCATCTTCCTTtacttccaacctaatt
tattCACCCTGTCCGATACTTCGCCTATCTTTAATGCTACTCTTAGCATC
GTGCTCtctcgttattttttttttaatttagtcttatttcaatttgattt
tttttaattatttagaaccgtattatttaaattttttgttccatgcattt
ttaattaaatgttgttgttaatttttttatctggGATTTGTTGTGAACAG
TTTTTAGTCACATGACCATGCATTTAACATAATTACCATTtatgtatttt
gaaaaatttgtttacaaaaaaaaatgaaaataagagaGACATGAAATAAT
GCGTAGTAATTATTCTGAAATTTTTGGGGCTATTTTGTAATGTGGTACCT
AAGGCCACTCCCACCACCTTTTGAATTTACTGGG

Coding sequence (CDS) from alignment at sc0000431:65945..73178+

>TCONS_00022698 ID=TCONS_00022698|Name=TCONS_00022698|organism=Clytia hemisphaerica|type=CDS|length=3855bp|location=Sequence derived from alignment at sc0000431:65945..73178+ (Clytia hemisphaerica)
ATGAAGTATTCACTTATTTTACTTGTAATCTCATGCATATCACTTTCCTT
GTGTACTGATACTGTAAAGATTGATATCATTGATAGACCAAAGGACTGCA
AGAGAATTGCCAAAGCTGGAGACAAAGTTTCAATGCATTATGATGGAACC
TTATTGAGTGGAAAGCCATTTGACAGCAGCAGAAGCAGAAACACACCTTT
TGATTTTGTATTAGGAAAACAACAAGTAATCAAGTGTTGGGATGAGTCCA
TCCCACAGATGTGTGTTGGTGAAAAACGAAGATTGACTTGTCCACCTGAA
TATGCCTATGGTGACCGTGGATTCGGAGATATCATTCCAGCCAAATCAAC
ATTAGTTTTTGAGGTTGAACTTTTGGACATTCTTTCATCTGCATCTGGCT
CttcaacaaaaaaagaagagaCACCAAAAAAAGAAGAACCAAAAACAGAA
ACTGAACCAGCAGAAGAAGAAGCACACCCAGAACACGACCACCCAGACTC
TTTTGAATCTGTTGACAAAGATGGTAATGGTGAAATCACACGTGAAGAGA
TGACTGCTTATATCAAGAGCTACTCTGAACAGGAAGATGGAGAAAATATG
CCAGAAGAtgaagaaatcaaaacattgatcagTGAAATTTTCCAATCTGA
CGACacaaacaaagatggtagcctAAGCAAGGAGGAATATTACCACGGAC
AAGAACAAGCTGCAAAAGATGCTGAGGGTATGGATCATGTCGATGATGCT
GACTTGAGAGATGAACTTTAAATGAAGTATTCACTTATTTTACTTGTAAT
CTCATGCATATCACTTTCCTTGTGTACTGATACTGTAAAGATTGATATCA
TTGATAGACCAAAGGACTGCAAGAGAATTGCCAAAGCTGGAGACAAAGTT
TCAATGCATTATGATGGAACCTTATTGAGTGGAAAGCCATTTGACAGCAG
CAGAAGCAGAAACACACCTTTTGATTTTGTATTAGGAAAACAACAAGTAA
TCAAGTGTTGGGATGAGTCCATCCCACAGATGTGTGTTGGTGAAAAACGA
AGATTGACTTGTCCACCTGAATATGCCTATGGTGACCGTGGATTCGGAGA
TATCATTCCAGCCAAATCAACATTAGTTTTTGAGGTTGAACTTTTGGACA
TTCTTTCATCTGCATCTGGCTCttcaacaaaaaaagaagagaCACCAAAA
AAAGAAGAACCAAAAACAGAAACTGAACCAGCAGAAGAAGAAGCACACCC
AGAACACGACCACCCAGACTCTTTTGAATCTGTTGACAAAGATGGTAATG
GTGAAATCACACGTGAAGAGATGACTGCTTATATCAAGAGCTACTCTGAA
CAGGAAGATGGAGAAAATATGCCAGAAGAtgaagaaatcaaaacattgat
cagTGAAATTTTCCAATCTGACGACacaaacaaagatggtagcctAAGCA
AGGAGGAATATTACCACGGACAAGAACAAGCTGCAAAAGATGCTGAGGGT
ATGGATCATGTCGATGATGCTGACTTGAGAGATGAACTTTAAATGAAGTA
TTCACTTATTTTACTTGTAATCTCATGCATATCACTTTCCTTGTGTACTG
ATACTGTAAAGATTGATATCATTGATAGACCAAAGGACTGCAAGAGAATT
GCCAAAGCTGGAGACAAAGTTTCAATGCATTATGATGGAACCTTATTGAG
TGGAAAGCCATTTGACAGCAGCAGAAGCAGAAACACACCTTTTGATTTTG
TATTAGGAAAACAACAAGTAATCAAGTGTTGGGATGAGTCCATCCCACAG
ATGTGTGTTGGTGAAAAACGAAGATTGACTTGTCCACCTGAATATGCCTA
TGGTGACCGTGGATTCGGAGATATCATTCCAGCCAAATCAACATTAGTTT
TTGAGGTTGAACTTTTGGACATTCTTTCATCTGCATCTGGCTCttcaaca
aaaaaagaagagaCACCAAAAAAAGAAGAACCAAAAACAGAAACTGAACC
AGCAGAAGAAGAAGCACACCCAGAACACGACCACCCAGACTCTTTTGAAT
CTGTTGACAAAGATGGTAATGGTGAAATCACACGTGAAGAGATGACTGCT
TATATCAAGAGCTACTCTGAACAGGAAGATGGAGAAAATATGCCAGAAGA
tgaagaaatcaaaacattgatcagTGAAATTTTCCAATCTGACGACacaa
acaaagatggtagcctAAGCAAGGAGGAATATTACCACGGACAAGAACAA
GCTGCAAAAGATGCTGAGGGTATGGATCATGTCGATGATGCTGACTTGAG
AGATGAACTTTAAATGAAGTATTCACTTATTTTACTTGTAATCTCATGCA
TATCACTTTCCTTGTGTACTGATACTGTAAAGATTGATATCATTGATAGA
CCAAAGGACTGCAAGAGAATTGCCAAAGCTGGAGACAAAGTTTCAATGCA
TTATGATGGAACCTTATTGAGTGGAAAGCCATTTGACAGCAGCAGAAGCA
GAAACACACCTTTTGATTTTGTATTAGGAAAACAACAAGTAATCAAGTGT
TGGGATGAGTCCATCCCACAGATGTGTGTTGGTGAAAAACGAAGATTGAC
TTGTCCACCTGAATATGCCTATGGTGACCGTGGATTCGGAGATATCATTC
CAGCCAAATCAACATTAGTTTTTGAGGTTGAACTTTTGGACATTCTTTCA
TCTGCATCTGGCTCttcaacaaaaaaagaagagaCACCAAAAAAAGAAGA
ACCAAAAACAGAAACTGAACCAGCAGAAGAAGAAGCACACCCAGAACACG
ACCACCCAGACTCTTTTGAATCTGTTGACAAAGATGGTAATGGTGAAATC
ACACGTGAAGAGATGACTGCTTATATCAAGAGCTACTCTGAACAGGAAGA
TGGAGAAAATATGCCAGAAGAtgaagaaatcaaaacattgatcagTGAAA
TTTTCCAATCTGACGACacaaacaaagatggtagcctAAGCAAGGAGGAA
TATTACCACGGACAAGAACAAGCTGCAAAAGATGCTGAGGGTATGGATCA
TGTCGATGATGCTGACTTGAGAGATGAACTTTAAATGAAGTATTCACTTA
TTTTACTTGTAATCTCATGCATATCACTTTCCTTGTGTACTGATACTGTA
AAGATTGATATCATTGATAGACCAAAGGACTGCAAGAGAATTGCCAAAGC
TGGAGACAAAGTTTCAATGCATTATGATGGAACCTTATTGAGTGGAAAGC
CATTTGACAGCAGCAGAAGCAGAAACACACCTTTTGATTTTGTATTAGGA
AAACAACAAGTAATCAAGTGTTGGGATGAGTCCATCCCACAGATGTGTGT
TGGTGAAAAACGAAGATTGACTTGTCCACCTGAATATGCCTATGGTGACC
GTGGATTCGGAGATATCATTCCAGCCAAATCAACATTAGTTTTTGAGGTT
GAACTTTTGGACATTCTTTCATCTGCATCTGGCTCttcaacaaaaaaaga
agagaCACCAAAAAAAGAAGAACCAAAAACAGAAACTGAACCAGCAGAAG
AAGAAGCACACCCAGAACACGACCACCCAGACTCTTTTGAATCTGTTGAC
AAAGATGGTAATGGTGAAATCACACGTGAAGAGATGACTGCTTATATCAA
GAGCTACTCTGAACAGGAAGATGGAGAAAATATGCCAGAAGAtgaagaaa
tcaaaacattgatcagTGAAATTTTCCAATCTGACGACacaaacaaagat
ggtagcctAAGCAAGGAGGAATATTACCACGGACAAGAACAAGCTGCAAA
AGATGCTGAGGGTATGGATCATGTCGATGATGCTGACTTGAGAGATGAAC
TTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012761XLOC_012761Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022698-exon-sc0000431-1491911889:65945..66288TCONS_00022698-exon-sc0000431-1491911889:65945..66288Clytia hemisphaericaexon
TCONS_00022698-exon-sc0000431-1510915933:65945..66288TCONS_00022698-exon-sc0000431-1510915933:65945..66288Clytia hemisphaericaexon
TCONS_00022698-exon-sc0000431-1575043694:65945..66288TCONS_00022698-exon-sc0000431-1575043694:65945..66288Clytia hemisphaericaexon
TCONS_00022698-exon-sc0000431-1491911889:70984..71183TCONS_00022698-exon-sc0000431-1491911889:70984..71183Clytia hemisphaericaexon
TCONS_00022698-exon-sc0000431-1510915933:70984..71183TCONS_00022698-exon-sc0000431-1510915933:70984..71183Clytia hemisphaericaexon
TCONS_00022698-exon-sc0000431-1575043694:70984..71183TCONS_00022698-exon-sc0000431-1575043694:70984..71183Clytia hemisphaericaexon
TCONS_00022698-exon-sc0000431-1491911889:71719..71922TCONS_00022698-exon-sc0000431-1491911889:71719..71922Clytia hemisphaericaexon
TCONS_00022698-exon-sc0000431-1510915933:71719..71922TCONS_00022698-exon-sc0000431-1510915933:71719..71922Clytia hemisphaericaexon
TCONS_00022698-exon-sc0000431-1575043694:71719..71922TCONS_00022698-exon-sc0000431-1575043694:71719..71922Clytia hemisphaericaexon
TCONS_00022698-exon-sc0000431-1491911889:72068..72156TCONS_00022698-exon-sc0000431-1491911889:72068..72156Clytia hemisphaericaexon
TCONS_00022698-exon-sc0000431-1510915933:72068..72156TCONS_00022698-exon-sc0000431-1510915933:72068..72156Clytia hemisphaericaexon
TCONS_00022698-exon-sc0000431-1575043694:72068..72156TCONS_00022698-exon-sc0000431-1575043694:72068..72156Clytia hemisphaericaexon
TCONS_00022698-exon-sc0000431-1491911889:72437..73178TCONS_00022698-exon-sc0000431-1491911889:72437..73178Clytia hemisphaericaexon
TCONS_00022698-exon-sc0000431-1510915933:72437..73178TCONS_00022698-exon-sc0000431-1510915933:72437..73178Clytia hemisphaericaexon
TCONS_00022698-exon-sc0000431-1575043694:72437..73178TCONS_00022698-exon-sc0000431-1575043694:72437..73178Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022698-proteinTCONS_00022698-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000431supercontigsc0000431:65945..73178 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
528.394	552.961	597.837	609.711	57.4391	48.6704	416.395	418.286	306.16	294.314	224.234	269.13	192.491	162.893	227.676	263.654	165.753	150.996	35.0431	77.8785	89.9711	90.1896	225.817	227.995	88.1081	101.987	132.719	87.7996	209.344	158.27
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR001179PPIase_FKBP_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
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BLAST of TCONS_00022698 vs. Swiss-Prot (Human)
Match: FKB1A (Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Homo sapiens GN=FKBP1A PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.678e-28
Identity = 53/106 (50.00%), Postives = 70/106 (66.04%), Query Frame = 1 
Query:  304 VKIDIIDRPKDCKRIAKAGDKVSMHYDGTLLSGKPFDSSRSRNTPFDFVLGKQQVIKCWDESIPQMCVGEKRRLTCPPEYAYGDRGFGDIIPAKSTLVFEVELLDI 621
            V+++ I  P D +   K G    +HY G L  GK FDSSR RN PF F+LGKQ+VI+ W+E + QM VG++ +LT  P+YAYG  G   IIP  +TLVF+VELL +
Sbjct:    3 VQVETIS-PGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 107
The following BLAST results are available for this feature:
BLAST of TCONS_00022698 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FKB1A1.678e-2850.00Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Homo... [more]
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