TCONS_00022697 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022697
Unique NameTCONS_00022697
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length477

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022697 ID=TCONS_00022697|Name=TCONS_00022697|organism=Clytia hemisphaerica|type=transcript|length=477bp
GGTCAATTAGTCACATAAACATAATAAACAACATCAAAACTCATTTCATT
TTATGCATGGATTTAACTTTTTATACTGACTTTGAATGTTTTCAAGCAAG
ACTATCTACTTTGAAAATATTCCCGCAATAACAAACAGCAAAAACACACG
TTTCATTTCGAATCATCAGCCTAGCACTACACCAAAATCTCCACCACTCT
ACTCCAGTCACCTCACTCGACTAGTAAATTGAATATCACAATGAAGTATT
CACTTATTTTACTTGTAATCTCATGCATATCACTTTCCTTGTGTACTGAT
ACTGTAAAGATTGATATCATTGATAGACCAAAGGACTGCAAGAGAATTGC
CAAAGCTGGAGACAAAGTTTCAATGCATTATGATGGAACCTTATTGAGTG
GAAAGCCATTTGACAGCAGCAGAAGCAGAAACACACCTTTTGATTTTGTA
TTGGGAAAACAACAAGTAATCAAGTGT
Run BLAST on NCBI

transcript from alignment at sc0000431:65945..70165+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022697 ID=TCONS_00022697|Name=TCONS_00022697|organism=Clytia hemisphaerica|type=transcript|length=4221bp|location=Sequence derived from alignment at sc0000431:65945..70165+ (Clytia hemisphaerica)
GGTCAATTAGTCACATAAACATAATAAACAACATCAAAACTCATTTCATT
TTATGCATGGATTTAACTTTTTATACTGACTTTGAATGTTTTCAAGCAAG
ACTATCTACTTTGAAAATATTCCCGCAATAACAAACAGCAAAAACACACG
TTTCATTTCGAATCATCAGCCTAGCACTACACCAAAATCTCCACCACTCT
ACTCCAGTCACCTCACTCGACTAGTAAATTGAATATCACAATGAAGTATT
CACTTATTTTACTTGTAATCTCATGCATATCACTTTCCTTGTGTACTGAT
ACTGTAAAGATTGATATCATTGATAGACCAAAGGACTGCAAGAGGTATCT
ATGCATGCAGCATgctgctgttttttttttaactttttaagaaTCATTTT
AACATATAATAAACTTTTTGTATAATTTAAACTTTCCATCAAGCTTTtaa
taaatactgtaatttggtctaatgtcgacataccTCAtgtaattctgaca
cccttttaAGATGATTAaaaggaaggtcggaatcactgattgaaaaaaaa
atgcgttcCTCTCTGACTGGCAGTTGGGTgtttttaagataaaaccaGAC
AATGTCAATCAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNgcaagttttggaagagatatgaagaataaacctcaaaaaagct
gattttttggtaaaaaagcccccccgggcagttttttgggctggaattcg
tcaaaaatgcgtaaaattaattttttttttttttaaatgtcttctatcat
tatatggaacagaaaaaacaccaggcgaagaagatctgaagatacccccc
aaaaaagttactctaccccctacccctattggcattcgattgcgttgggc
aatcaaatttcaatcattcaattgcgttcaattgattcggcgttcgattc
gttcaattgacatcgtctggataAAAGCAGCAATTATTGCCGAAAGCGGC
AATTTTTTtgacgatgaaatgctgaatcagcagaaaaataagaaaagtaa
ataaataaaaattgttgtttttggCGCAATACaactttcccgtaattcaa
acttctcagaaatggcccggtaaaatgtgcgctccaccgttgtgtataaa
attgtttgggaggtaaacgaaCGCGTTTTTGCCAGCGAAAGGTTAGGGAA
GGTGGGTTTttagcttctaacttttgataacgatcttcttttggcaaaag
attttcagggtggcataatatcatgaatagattgaacatactaaaatttg
agggaattttgtttgacagaacttaggaaaagctaaaaaaaacaactttc
cctaaggaaacgcaggcaaaaacgggtttgtttacttccagagaccaaac
agtggagagcatcaaaataaggcgcattagttttacgaattatgggaaag
gtgtattaatgTCGTTTTTATGgaaagaaaagttgattttattattgaac
acatGGTATTTAACACCCTCACGATAAGTAGacccactgtgcctcgttta
gttttgttttcaactggtttttgttggaaatgcataCAAACTTACAGCGG
GGgctttgttatctctttctggctgtgtttcaaCATCAATGCAGGATCTt
tttacatattattttagaacttttcatgttattgagcaatgaaaaattga
aagaatcacttttaaaaatccaaaaaacctttttctcaaatacaatttta
caattttcaaacacctctgacatctttgcccttataaggacaacacattt
tgctgattcagcatttaatagttgaaaaaattgccaaaaagaacaataac
tgcagtttttatcttaaacacccaactgacTGGTTTATTAGCTATCAGCC
ATTCTGACCTTTCCATTATTCCCAGGTTGAAAGAGGGGTGTCGGAATTAG
CTAAGGGATTTTGACAATAGACCAACTTGCAATATAATGGTTTCAACACT
GTAAAGTATTTTTGGGAAACATGAATTTGGAAGTTAAGACTAAGGATGGG
GATGATTCTGTGgtgcaaataaggaaatttcagttggccCGTAATTTTGG
GAGCATATAACTGCTATTCACCGGCTGctatttgcagcactgaagATACT
ACATgttatcttactatactaagaTATATGGCAAGGTCTTAGTATGCTAA
AGTTAAACACAACAAcaataattttctttgttctACAGAATTGCCAAAGC
TGGAGACAAAGTTTCAATGCATTATGATGGAACCTTATTGAGTGGAAAGC
CATTTGACAGCAGCAGAAGCAGAAACACACCTTTTGATTTTGTATTGGGA
AAACAACAAGTAATCAAGTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012761XLOC_012761Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022697-exon-sc0000431-1491911889:65945..66288TCONS_00022697-exon-sc0000431-1491911889:65945..66288Clytia hemisphaericaexon
TCONS_00022697-exon-sc0000431-1510915933:65945..66288TCONS_00022697-exon-sc0000431-1510915933:65945..66288Clytia hemisphaericaexon
TCONS_00022697-exon-sc0000431-1575043694:65945..66288TCONS_00022697-exon-sc0000431-1575043694:65945..66288Clytia hemisphaericaexon
TCONS_00022697-exon-sc0000431-1491911889:70033..70165TCONS_00022697-exon-sc0000431-1491911889:70033..70165Clytia hemisphaericaexon
TCONS_00022697-exon-sc0000431-1510915933:70033..70165TCONS_00022697-exon-sc0000431-1510915933:70033..70165Clytia hemisphaericaexon
TCONS_00022697-exon-sc0000431-1575043694:70033..70165TCONS_00022697-exon-sc0000431-1575043694:70033..70165Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000431supercontigsc0000431:65945..70165 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
166.357	186.669	198.838	215.755	43.9586	34.6096	257.885	272	76.5548	83.0065	59.051	79.8119	59.2891	49.6177	61.3211	70.5282	47.4723	47.0557	9.8523	20.8331	29.2593	25.1616	79.0334	80.4483	56.2905	66.3344	46.5363	34.3155	69.0012	54.7012
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022697 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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