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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022694 ID=TCONS_00022694|Name=TCONS_00022694|organism=Clytia hemisphaerica|type=transcript|length=1284bp
CAAAATCTAAAAGTTATGCCAATGTAAAAACCGCTGTCAATGATCCTCTT
ACAGTAgtaaagctgaaattttttgcTTACGTTGCTGGTATACTCGAACC
ATTCTTAAAGATATACCAAACTGACAAACCCATGATCCCTTTTCtctatt
ttgatttgaaatcaaTCGTTTTAACGCTAATGGTAATGAAATTGTTTATA
AAGCCAAAGTGTGTATCTGGGGCAAAAACGGGGATGCAACTGTGTGGAAT
TGACCTGGAAAATGAATCGAACCAAATTAATCTGAAAGATATTGGTCTTG
GGTTTGCTGCTGAAGAAGAACTTGAAAAGCTTAAAACTGCAGATCTTGTA
ACGGCGACTAAagaatcatcattttttaaagagGTCCGGACTTTCCTTAT
CTCTCTCATCAAAAAGTTGTTAACTAAAACGCCTCTCACATCAGTAGTCG
TCAGGTTTGCTTCAATTTTTGATCCATCTATCATCATTTCGACACCAACG
GATaagattgaaaaaaacttgaagAAACTGCTTCATCATcttttgagtct
gaaaattgTAACTGCTAAAAATTCGgataaaattcatcaagagtTTGTTC
CATTCCACAAAGATGTGAAAGCACAACGTGACAAGTTCTAAGCCTTCTCA
AAATCAAAGGATTCTCTTGACACGTTTTATTTTGGCTTATTTCCAAAATT
AAATGACAACTTTCCAAACCTGGCATTTCTCCTGAAACTCATCTTTGTTT
TAAGCTATGGCCAAGCCTCTGTTGAAAGAGGTTTCAGCTTGCGAAATGAT
TCTTTGAAAGATAACATCTCTGAGCTATCCATTGATTCTAAGCATGTCAT
CGTTGACCATATGTTATCAAATGATATTAAGCCCGAGACTATGGATATTA
ACACTCCTCTCATAGTAGCTTTCAAATCTGGCCGCGCAAAATACGAAGAA
AGTAAGAAACAAGCTAAGAAAGAGAAAATCTTGACTGAACAAGAAAATCG
AAAGAGACAGCTATGCATCGAGattaatgaaataaaattgaagatagcat
cattgaaaaaaaatgtgtcCTATTTAGACGATGAGTTTACTAACTCCATA
TTGCAAGCTGAGGACCAAAATGTAAATGAACAGTCACTAATTATTTCCAA
AGCAACAGCATTGAagagaaaaagtatttctaAAAGTGAAGAGGCTGAAC
AATTAGAGAATAAGGTGAAAATGTTAGAAGCCAAGAGAAAGAAACTCTGA
AAGAAACGATTTATGAAGTTACATACATAAATTC Run BLAST on NCBI protein sequence of TCONS_00022694-protein >TCONS_00022694-protein ID=TCONS_00022694-protein|Name=TCONS_00022694-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
KSKSYANVKTAVNDPLTVVKLKFFAYVAGILEPFLKIYQTDKPMIPFLYF
DLKSIVLTLMVMKLFIKPKCVSGAKTGMQLCGIDLENESNQINLKDIGLG
FAAEEELEKLKTADLVTATKESSFFKEVRTFLISLIKKLLTKTPLTSVVV
RFASIFDPSIIISTPTDKIEKNLKKLLHHLLSLKIVTAKNSDKIHQEFVP
FHKDVKAQRDKF Run BLAST on NCBI transcript from alignment at sc0000431:599..2145+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022694 ID=TCONS_00022694|Name=TCONS_00022694|organism=Clytia hemisphaerica|type=transcript|length=1547bp|location=Sequence derived from alignment at sc0000431:599..2145+ (Clytia hemisphaerica)
CAAAATCTAAAAGTTATGCCAATGTAAAAACCGCTGTCAATGATCCTCTT
ACAGTAgtaaagctgaaattttttgcTTACGTTGCTGGTATACTCGAACC
ATTCTTAAAGATATACCAAACTGACAAACCCATGATCCCTTTTCtctatt
ttgatttgaaatcaaTCGTTTTAACGCTAATGGTAATGAAATTGTTTATA
AAGCCAAAGTGTGTATCTGGGGCAAAAACGGGGATGCAACTGTGTGGAAT
TGACCTGGAAAATGAATCGAACCAAATTAATCTGAAAGATATTGGTCTTG
GGTTTGCTGCTGAAGAAGAACTTGAAAAGCTTAAAACTGCAGATCTTGTA
ACGGCGACTAAagaatcatcattttttaaagagGTCCGGACTTTCCTTAT
CTCTCTCATCAAAAAGTTGTTAACTAAAACGCCTCTCACATCAGTAGTCG
TCAGGTTTGCTTCAATTTTTGATCCATCTATCATCATTTCGACACCAACG
GATaagattgaaaaaaacttgaagAAACTGCTTCATCATcttttgagtct
gaaaattgTAACTGCTAAAAATTCGgataaaattcatcaagagtTTGTTC
CATTCCACAAAGATGTGAAAGCACAACGTGACAAGTTCTAAGCCTTCTCA
AAATCAAAGGATTCTCTTGACACGTTTTATTTTGGCTTATTTCCAAAATT
AAATGACAACTTTCCAAACCTGGCATTTCTCCTGAAACTCATCTTTGTTT
TAAGGTTCGTAAACTATTTACTTCAATACTTTGCTGTCTTACTTCATAAC
AGCTGACGTCTAGTTTGATGTTGAAACTATTCGATCAGCTCCTGTTTTAG
CATCAAATTGAAAGTCGCACTCTCAAATTTCTCTACGTAACTCTATTAAG
CATCGCCATACTTTTCAGACATATTATTAATTCATAACCATCtgatttcg
ataaaaatttctaCATGACAAATGTTGAATTATTTTACATCTAACAGTTT
AAACTCTTTTCCTCCAGCTATGGCCAAGCCTCTGTTGAAAGAGGTTTCAG
CTTGCGAAATGATTCTTTGAAAGATAACATCTCTGAGCTATCCATTGATT
CTAAGCATGTCATCGTTGACCATATGTTATCAAATGATATTAAGCCCGAG
ACTATGGATATTAACACTCCTCTCATAGTAGCTTTCAAATCTGGCCGCGC
AAAATACGAAGAAAGTAAGAAACAAGCTAAGAAAGAGAAAATCTTGACTG
AACAAGAAAATCGAAAGAGACAGCTATGCATCGAGattaatgaaataaaa
ttgaagatagcatcattgaaaaaaaatgtgtcCTATTTAGACGATGAGTT
TACTAACTCCATATTGCAAGCTGAGGACCAAAATGTAAATGAACAGTCAC
TAATTATTTCCAAAGCAACAGCATTGAagagaaaaagtatttctaAAAGT
GAAGAGGCTGAACAATTAGAGAATAAGGTGAAAATGTTAGAAGCCAAGAG
AAAGAAACTCTGAAAGAAACGATTTATGAAGTTACATACATAAATTC Coding sequence (CDS) from alignment at sc0000431:599..2145+ >TCONS_00022694 ID=TCONS_00022694|Name=TCONS_00022694|organism=Clytia hemisphaerica|type=CDS|length=639bp|location=Sequence derived from alignment at sc0000431:599..2145+ (Clytia hemisphaerica)
AAATCTAAAAGTTATGCCAATGTAAAAACCGCTGTCAATGATCCTCTTAC
AGTAgtaaagctgaaattttttgcTTACGTTGCTGGTATACTCGAACCAT
TCTTAAAGATATACCAAACTGACAAACCCATGATCCCTTTTCtctatttt
gatttgaaatcaaTCGTTTTAACGCTAATGGTAATGAAATTGTTTATAAA
GCCAAAGTGTGTATCTGGGGCAAAAACGGGGATGCAACTGTGTGGAATTG
ACCTGGAAAATGAATCGAACCAAATTAATCTGAAAGATATTGGTCTTGGG
TTTGCTGCTGAAGAAGAACTTGAAAAGCTTAAAACTGCAGATCTTGTAAC
GGCGACTAAagaatcatcattttttaaagagGTCCGGACTTTCCTTATCT
CTCTCATCAAAAAGTTGTTAACTAAAACGCCTCTCACATCAGTAGTCGTC
AGGTTTGCTTCAATTTTTGATCCATCTATCATCATTTCGACACCAACGGA
TaagattgaaaaaaacttgaagAAACTGCTTCATCATcttttgagtctga
aaattgTAACTGCTAAAAATTCGgataaaattcatcaagagtTTGTTCCA
TTCCACAAAGATGTGAAAGCACAACGTGACAAGTTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022694-exon-sc0000431-1491911889:599..1352 | TCONS_00022694-exon-sc0000431-1491911889:599..1352 | Clytia hemisphaerica | exon |
| TCONS_00022694-exon-sc0000431-1510915933:599..1352 | TCONS_00022694-exon-sc0000431-1510915933:599..1352 | Clytia hemisphaerica | exon |
| TCONS_00022694-exon-sc0000431-1575043694:599..1352 | TCONS_00022694-exon-sc0000431-1575043694:599..1352 | Clytia hemisphaerica | exon |
| TCONS_00022694-exon-sc0000431-1491911889:1616..2145 | TCONS_00022694-exon-sc0000431-1491911889:1616..2145 | Clytia hemisphaerica | exon |
| TCONS_00022694-exon-sc0000431-1510915933:1616..2145 | TCONS_00022694-exon-sc0000431-1510915933:1616..2145 | Clytia hemisphaerica | exon |
| TCONS_00022694-exon-sc0000431-1575043694:1616..2145 | TCONS_00022694-exon-sc0000431-1575043694:1616..2145 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000431 | supercontig | sc0000431:599..2145 + |
Blast
The following BLAST results are available for this feature:
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