TCONS_00022679 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022679
Unique NameTCONS_00022679
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length606

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022679 ID=TCONS_00022679|Name=TCONS_00022679|organism=Clytia hemisphaerica|type=transcript|length=606bp
gtcattttctgtcgactaatgcgatctaaaatctatggttattttcagtt
tttgagacatgtcATAAGTTACCCGAGTATTATAAATAGCATAATCATTC
AGTGATTTATGAgagaatttatataaaaaatatttctcgaAAAAGATTTG
GGGTGAGGCAACACCCCCTTTCTCCCCGTCCCGTTCATAGTTAGTATACC
CAATTATGCTTCATCCACCCCATTTCTAGTTTCCAAGCAAATGGCGCCCG
ATACTTCAATTTTATCGTCATCcgcgaaaaaaattaaatcgtaCCCAGGT
GCTGCAATCAAAGCTTCAACCATTGGTGCAtactaaaaaatctaaaaaaa
aaaccaaGATTATGTGATTCAAAAGCATTCACGTTTCACCCCGCCCGATT
TTGAGATTGACATTTTTTCTAATGGGTTGTATACGCACATTTGATaccaa
aatatatttgaaaacttTAAGTTGCTGAGTGCAGGTAGCATTAAAtggtt
tgaatttttatttactttacaATCTTAGTAGTATTTGGTAAGAAAATTCA
TCAGTAGCCTGAAAAGCTAGATAGTCGTACCCAGTGCTCATCCTGCGTGT
TCCATT
Run BLAST on NCBI

transcript from alignment at sc0000430:164661..165266

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022679 ID=TCONS_00022679|Name=TCONS_00022679|organism=Clytia hemisphaerica|type=transcript|length=606bp|location=Sequence derived from alignment at sc0000430:164661..165266 (Clytia hemisphaerica)
AATGGAACACGCAGGATGAGCACTGGGTACGACTATCTAGCTTTTCAGGC
TACTGATGAATTTTCTTACCAAATACTACTAAGATtgtaaagtaaataaa
aattcaaaccaTTTAATGCTACCTGCACTCAGCAACTTAaagttttcaaa
tatattttggtATCAAATGTGCGTATACAACCCATTAGAAAAAATGTCAA
TCTCAAAATCGGGCGGGGTGAAACGTGAATGCTTTTGAATCACATAATCt
tggttttttttttagattttttagtaTGCACCAATGGTTGAAGCTTTGAT
TGCAGCACCTGGGtacgatttaatttttttcgcgGATGACGATAAAATTG
AAGTATCGGGCGCCATTTGCTTGGAAACTAGAAATGGGGTGGATGAAGCA
TAATTGGGTATACTAACTATGAACGGGACGGGGAGAAAGGGGGTGTTGCC
TCACCCCAAATCTTTTtcgagaaatattttttatataaattctcTCATAA
ATCACTGAATGATTATGCTATTTATAATACTCGGGTAACTTATgacatgt
ctcaaaaactgaaaataaccatagattttagatcgcattagtcgacagaa
aatgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012744XLOC_012744Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022679-exon-sc0000430-1491911889:164661..165266TCONS_00022679-exon-sc0000430-1491911889:164661..165266Clytia hemisphaericaexon
TCONS_00022679-exon-sc0000430-1510915933:164661..165266TCONS_00022679-exon-sc0000430-1510915933:164661..165266Clytia hemisphaericaexon
TCONS_00022679-exon-sc0000430-1575043694:164661..165266TCONS_00022679-exon-sc0000430-1575043694:164661..165266Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000430supercontigsc0000430:164661..165266 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.69793	0.871446	0.202366	0.296976	0	0.190462	0.229785	0.537804	0.150612	0.279835	0.362153	0.238065	0	0	0	0	0.603771	0.893888	0	0.099407	0.518417	0.252865	0.307391	0.558926	0	0	0.245073	0.392323	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022679 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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