TCONS_00022673 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022673
Unique NameTCONS_00022673
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length730

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022673 ID=TCONS_00022673|Name=TCONS_00022673|organism=Clytia hemisphaerica|type=transcript|length=730bp
GGGTCGCTATCGGCGTCAGAGAAATTTGGTCgtcaaaatgaataaaaaag
caaagaagTCTTACTTCATGAACACAACTAATAAGCCAAAACACTTTTGG
GATGCCATCAAACCTAAATTCTCTGATAAAAGTTGTGTAAATGATGGAAG
AATTcaattgcttgaaaatgatattttatataCATCTGATAATCAAGTTG
CAAATACTTTCAATTCCTATTTTAATAGGATCACCGAAAATCTTGATATT
CCAAGTTGGGACTGCGATAACTTGCCTTTGAATTCTGATAATtccttaat
ttcaaaatttgaaaatcatcctAACATCAGGGAAATCATTACACACAGAA
ATTCTGAGGCTAAGTTTGAGTTTTCCCAAATTGGAGAGCAAGACATTCTC
AAAGCTATTTTGAGCCTTAAACCAAAAAAATCTGTAAGTGGAAATATACC
GACTCGAGTGCTTAGAATTGCTGCCAGGTCGTGTGTTCAATTTCTAACAT
TTTGCTTCAATGACTGTCTTTTGTCAGGAACATTTCCTGATAGGCTTAAA
CTCGCTGACATCATTCCAAGTTTTAAAAAGGCTCCTTGACTGATAAGTCA
AATTACAGACCCATTAGTTTACTTCCTGTCGTCTCCAAGATTTTTGAACG
TATCTTAGCAGATCAGCTTAACGAGCATTTGGAatcttcgttttcaaaac
tcCTCTGTGGATTTCGGAAGGGGCATAGCA
Run BLAST on NCBI

protein sequence of TCONS_00022673-protein

>TCONS_00022673-protein ID=TCONS_00022673-protein|Name=TCONS_00022673-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
GRYRRQRNLVVKMNKKAKKSYFMNTTNKPKHFWDAIKPKFSDKSCVNDGR
IQLLENDILYTSDNQVANTFNSYFNRITENLDIPSWDCDNLPLNSDNSLI
SKFENHPNIREIITHRNSEAKFEFSQIGEQDILKAILSLKPKKSVSGNIP
TRVLRIAARSCVQFLTFCFNDCLLSGTFPDRLKLADIIPSFKKAP
Run BLAST on NCBI

transcript from alignment at sc0000430:59584..60313

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022673 ID=TCONS_00022673|Name=TCONS_00022673|organism=Clytia hemisphaerica|type=transcript|length=730bp|location=Sequence derived from alignment at sc0000430:59584..60313 (Clytia hemisphaerica)
TGCTATGCCCCTTCCGAAATCCACAGAGgagttttgaaaacgaagatTCC
AAATGCTCGTTAAGCTGATCTGCTAAGATACGTTCAAAAATCTTGGAGAC
GACAGGAAGTAAACTAATGGGTCTGTAATTTGACTTATCAGTCAAGGAGC
CTTTTTAAAACTTGGAATGATGTCAGCGAGTTTAAGCCTATCAGGAAATG
TTCCTGACAAAAGACAGTCATTGAAGCAAAATGTTAGAAATTGAACACAC
GACCTGGCAGCAATTCTAAGCACTCGAGTCGGTATATTTCCACTTACAGA
TTTTTTTGGTTTAAGGCTCAAAATAGCTTTGAGAATGTCTTGCTCTCCAA
TTTGGGAAAACTCAAACTTAGCCTCAGAATTTCTGTGTGTAATGATTTCC
CTGATGTTaggatgattttcaaattttgaaattaaggaATTATCAGAATT
CAAAGGCAAGTTATCGCAGTCCCAACTTGGAATATCAAGATTTTCGGTGA
TCCTATTAAAATAGGAATTGAAAGTATTTGCAACTTGATTATCAGATGta
tataaaatatcattttcaagcaattgAATTCTTCCATCATTTACACAACT
TTTATCAGAGAATTTAGGTTTGATGGCATCCCAAAAGTGTTTTGGCTTAT
TAGTTGTGTTCATGAAGTAAGActtctttgcttttttattcattttgacG
ACCAAATTTCTCTGACGCCGATAGCGACCC

Coding sequence (CDS) from alignment at sc0000430:59584..60313

>TCONS_00022673 ID=TCONS_00022673|Name=TCONS_00022673|organism=Clytia hemisphaerica|type=CDS|length=588bp|location=Sequence derived from alignment at sc0000430:59584..60313 (Clytia hemisphaerica)
TCAAGGAGCCTTTTTAAAACTTGGAATGATGTCAGCGAGTTTAAGCCTAT
CAGGAAATGTTCCTGACAAAAGACAGTCATTGAAGCAAAATGTTAGAAAT
TGAACACACGACCTGGCAGCAATTCTAAGCACTCGAGTCGGTATATTTCC
ACTTACAGATTTTTTTGGTTTAAGGCTCAAAATAGCTTTGAGAATGTCTT
GCTCTCCAATTTGGGAAAACTCAAACTTAGCCTCAGAATTTCTGTGTGTA
ATGATTTCCCTGATGTTaggatgattttcaaattttgaaattaaggaATT
ATCAGAATTCAAAGGCAAGTTATCGCAGTCCCAACTTGGAATATCAAGAT
TTTCGGTGATCCTATTAAAATAGGAATTGAAAGTATTTGCAACTTGATTA
TCAGATGtatataaaatatcattttcaagcaattgAATTCTTCCATCATT
TACACAACTTTTATCAGAGAATTTAGGTTTGATGGCATCCCAAAAGTGTT
TTGGCTTATTAGTTGTGTTCATGAAGTAAGActtctttgcttttttattc
attttgacGACCAAATTTCTCTGACGCCGATAGCGACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012738XLOC_012738Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022673-proteinTCONS_00022673-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022673-exon-sc0000430-1491911889:59584..60313TCONS_00022673-exon-sc0000430-1491911889:59584..60313Clytia hemisphaericaexon
TCONS_00022673-exon-sc0000430-1510915933:59584..60313TCONS_00022673-exon-sc0000430-1510915933:59584..60313Clytia hemisphaericaexon
TCONS_00022673-exon-sc0000430-1575043694:59584..60313TCONS_00022673-exon-sc0000430-1575043694:59584..60313Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000430supercontigsc0000430:59584..60313 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0971303	0.0962826	0.214602	0	3.74526	2.20651	2.65463	2.42384	1.04142	1.5177	0.2415	0.907757	0.064096	0	0.509379	0.124228	0.163732	0.433989	0.144774	0.352773	0.724031	0.393901	0.407959	0.374049	0	0	1.05677	0.398951	0.149258	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022673 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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