TCONS_00022665 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022665
Unique NameTCONS_00022665
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1611

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022665 ID=TCONS_00022665|Name=TCONS_00022665|organism=Clytia hemisphaerica|type=transcript|length=1611bp
TGTTGATTGTAGACTTTCATGACAATGTCCTTGTTTAGAGCCAGTCTTGA
TGGCTCTTTGATGAGCGGAAACATGGCAGTTACAGTCTGAGTGTCGGAAT
CGATTGTAATCGATGAATTGATGAGTTCTTCCTCAGCTTCCTCTTTGATG
CTTATCATCTCGATGCGTTCTGATTCTTTTTGCATGATTTGCAATTCCTA
CACTTCATACAACGATAAGTGATTGTGCCTGATGATTCAACTTCGTCAAA
GCGTTTGAGTTTGTTGGTGAAGGATAATCTCTTGATGTCTGGATTTGTCT
GGATACCCCATCTGTAGAGTTTAGTTTGAGTTGACCAGTGAAGAAATTGA
AGGTTTTGTCCTCAGTGAAGTATGTTTGATGAATTGCAGTGAAGATTTCA
TGTGTTCCTCTGATCACACTCTTCCACCATCAAAGTTGTTGAAAACAGAT
TCGTAAATCCCCAGACCAGAtggtagttggAAGATAAGCTTAGGATGATA
ACGAATGAATTTCATACCCACCATCAGGTGTACATCCCCACCAACTGTGG
CTACTGGCTTTGGAAGCATTGATGTAGGTCCACTGGCGGTGTATACCTGC
TGGATGTCTTTCATGACTTCTGTCAATGGATATTGTGGGAATGTTTCTGT
GATGGGTTCCATACAGATTCCTGAGACGAGGGCTTCTTCTCCATTGAACA
TTGGTAGTCGAACATTGTATTCACCATGTGTTGTCATTGTTGATGTGCAG
CCAACTCCTCCAATGCGTTTTGGTTGTGCTGAGANTGTGTCGTCATTGTT
GATGTGCAGCCAACTCCTCCAATGCGTTTTGGTTGTGCTGAGAGTTGAGT
TGCGTTGCCACCAAGAAGTGGGATTGCTGACTTCTTGACGATAAAGTCAG
AACATCCATTGTCGAAGAATAGTGTCAAACGATTGTTGTTGATGTTGATT
GATTGAAGAAGATAGATTCCTCTCTCATCCTTGTCTTCTGGAGTTGACTT
CGTTGGGAAGGCTGAATAGTAGATGCTGATGTCCTTGGCAAATGTTGGAA
GGTTGGCGTTCTTCATGTACCTGTCTTTGAAGCGTTGAAGCACTTCTTGA
TTTGCTGGTAGGCTTTTGTGTTCCTCACAGACAAGAACATGCTTGTGGAT
GGGATACTTCGCATGGGATTCATGTGGGCAGTATGGGTATCTTGACACTT
CCCTTCTCGATGTCACCCAGTTGAACTGTTGGCACCAGGAAACAAGCATT
GATGACAAAATCCCTGCTTTCGGAGGAAGGAATATCGGTTTGCAGGTGTC
ATCTCAGCAAATTGCTTGCAGGTGAAGTATTGAATGAGTTGCATTTGTTG
GGTCCAATGGTTGCCACGTGATTATTGCTGCCAATGGAACTGTCGCATAC
AGGACATGTTGGATCTTGTGGTAGGCCATTCTGATAGGTGTTGCCTGATG
ATGAACCTTTGTTGCCACGATTACCTTTTTGATCTTGTCGATGTGACTGT
CGTTTCTTCTGAGGTGCTGAGCTGTAGATAAGAACTTTCTGCTGTTCAAG
CTACAATTCCTTTTCGAGAAATTGGATGAATCGTAACCAGGTGGTCTTTG
GTGAAAGCGTG
Run BLAST on NCBI

transcript from alignment at sc0000430:146677..148516-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022665 ID=TCONS_00022665|Name=TCONS_00022665|organism=Clytia hemisphaerica|type=transcript|length=1840bp|location=Sequence derived from alignment at sc0000430:146677..148516- (Clytia hemisphaerica)
TGTTGATTGTAGACTTTCATGACAATGTCCTTGTTTAGAGCCAGTCTTGA
TGGCTCTTTGATGAGCGGAAACATGGCAGTTACAGTCTGAGTGTCGGAAT
CGATTGTAATCGATGAATTGATGAGTTCTTCCTCAGCTTCCTCTTTGATG
CTTATCATCTCGATGCGTTCTGATTCTTTTTGCATGATTTGCAATTCCTA
CACTTCATACAACGATAAGTGATTGTGCCTGATGATTCAACTTCGTCAAA
GCGTTTGAGTTTGTTGGTGAAGGATAATCTCTTGATGTCTGGATTTGTCT
GGATACCCCATCTGTAGAGTTTAGTTTGAGTTGACCAGTGAAGAAATTGA
AGGTTTTGTCCTCAGTGAAGTATGTTTGATGAATTGCAGTGAAGATTTCA
TGTGTTCCTCTGATCACACTCTTCCACCATCAAAGTTGTTGAAAACAGAT
TCGTAAATCCCCAGACCAGATGGTACCTTAAAGGAAGAAATTTTGGCGGA
AAGAAAATTTGGCGGATTTGGCGGATTTGACTGAAATCCGCCAAATTAAA
TTCCAGCCAAAATTTCTTTTTTCTGCCATCCGCCAAATTAAATTCCCGCC
AAATTTAGTTTTTTCGTCCATCCGCCGAATTAAATTCCCTCTGAAAAAAC
TTTTTTGGCCATCCGCCAAATTAAATTCCCGCCAGAATTTCTTCCTTTAA
GGTAGTTGGAAGATAAGCTTAGGATGATAACGAATGAATTTCATACCCAC
CATCAGGTGTACATCCCCACCAACTGTGGCTACTGGCTTTGGAAGCATTG
ATGTAGGTCCACTGGCGGTGTATACCTGCTGGATGTCTTTCATGACTTCT
GTCAATGGATATTGTGGGAATGTTTCTGTGATGGGTTCCATACAGATTCC
TGAGACGAGGGCTTCTTCTCCATTGAACATTGGTAGTCGAACATTGTATT
CACCATGTGTTGTCATTGTTGATGTGCAGCCAACTCCTCCAATGCGTTTT
GGTTGTGCTGAGANTGTGTCGTCATTGTTGATGTGCAGCCAACTCCTCCA
ATGCGTTTTGGTTGTGCTGAGAGTTGAGTTGCGTTGCCACCAAGAAGTGG
GATTGCTGACTTCTTGACGATAAAGTCAGAACATCCATTGTCGAAGAATA
GTGTCAAACGATTGTTGTTGATGTTGATTGATTGAAGAAGATAGATTCCT
CTCTCATCCTTGTCTTCTGGAGTTGACTTCGTTGGGAAGGCTGAATAGTA
GATGCTGATGTCCTTGGCAAATGTTGGAAGGTTGGCGTTCTTCATGTACC
TGTCTTTGAAGCGTTGAAGCACTTCTTGATTTGCTGGTAGGCTTTTGTGT
TCCTCACAGACAAGAACATGCTTGTGGATGGGATACTTCGCATGGGATTC
ATGTGGGCAGTATGGGTATCTTGACACTTCCCTTCTCGATGTCACCCAGT
TGAACTGTTGGCACCAGGAAACAAGCATTGATGACAAAATCCCTGCTTTC
GGAGGAAGGAATATCGGTTTGCAGGTGTCATCTCAGCAAATTGCTTGCAG
GTGAAGTATTGAATGAGTTGCATTTGTTGGGTCCAATGGTTGCCACGTGA
TTATTGCTGCCAATGGAACTGTCGCATACAGGACATGTTGGATCTTGTGG
TAGGCCATTCTGATAGGTGTTGCCTGATGATGAACCTTTGTTGCCACGAT
TACCTTTTTGATCTTGTCGATGTGACTGTCGTTTCTTCTGAGGTGCTGAG
CTGTAGATAAGAACTTTCTGCTGTTCAAGCTACAATTCCTTTTCGAGAAA
TTGGATGAATCGTAACCAGGTGGTCTTTGGTGAAAGCGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012733XLOC_012733Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022665-exon-sc0000430-1575043694:148045..148516TCONS_00022665-exon-sc0000430-1575043694:148045..148516Clytia hemisphaericaexon
TCONS_00022665-exon-sc0000430-1575043694:146677..147815TCONS_00022665-exon-sc0000430-1575043694:146677..147815Clytia hemisphaericaexon
TCONS_00022665-exon-sc0000430-1510915933:148045..148516TCONS_00022665-exon-sc0000430-1510915933:148045..148516Clytia hemisphaericaexon
TCONS_00022665-exon-sc0000430-1510915933:146677..147815TCONS_00022665-exon-sc0000430-1510915933:146677..147815Clytia hemisphaericaexon
TCONS_00022665-exon-sc0000430-1491911889:148045..148516TCONS_00022665-exon-sc0000430-1491911889:148045..148516Clytia hemisphaericaexon
TCONS_00022665-exon-sc0000430-1491911889:146677..147815TCONS_00022665-exon-sc0000430-1491911889:146677..147815Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000430supercontigsc0000430:146677..148516 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.000281531	0.314104	0.0606039	1.25943	1.16449	0.603387	1.14159	0	0.784943	0.244748	0.588131	0.593706	1.0465	0.2107	0.0479582	0	0.14909	0.162989	0.453377	0	0.0673655	0	0	0.564028	1.01846	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022665 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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