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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022661 ID=TCONS_00022661|Name=TCONS_00022661|organism=Clytia hemisphaerica|type=transcript|length=3643bp
ATCAGATCAGAGTGTTGTTTGCCTCTAAACTGAATCGGATCAACTTCACA
ATCCTATTTAGAAACTTTGTTATTTTCCANACTGCCTCGGATCAACTTCA
CAATCCTATTTACAAACTTTGTTATTTTCCGCTTTGGATATTGACGTCGC
GCGCGCAAATTAAATTGTTATGCGTGGAGCAATCTACTGTATAAAGTAAT
AATCGAGTGAATACATTTAATTAGTGGTGCTTAATTTCTAATTGTCTATC
TATAATTGGATGGTCGTACTCGATAATTATTAAAAAGGTGAAGCACAAGA
GACTGCATGAAAAGAGGACGATAATCAGTTTGTTGATTGGTTTGAAGTGG
ACACAACACGAGAAGGTTGACGTTTGACCAAGATTGACTTCATTGGGGGC
GAATCACAGATTTAGAAACTCATATCATTGTCATTTTGGGAGTAAAACGT
CGGTACTTGGACACAGAATATCACAATGCCATACGTTGAAATCAAGCTTG
GAGCTAATGAGATTGGAACATGGAGATTCTGGAGAGCAGTTTTAGCTGAA
TTTCTCGGAATGCTTTTATTTTTGCTTTGCGTCACTACTGTGGCCTTGCA
TGGTACCAAAGACAATCAATCGGCTAATAACGTTGAAGCTGGTTTAGGTA
TTGCATTTGGTATCACAACATTAGCACAAGCGTTTGGCCACGTCAGTGGC
GGTCATCTTAACCCAGCGGTTACGCTTGGGCTTGTAGTTGGTGGACGAAC
ACCTATTATTAGAGGATTCTTTTATATTGCAGCTCAAATGGTCGGAGCAA
TTGCTGGTTCAGGGATCACATATGGTTGCACACCAGAAGCAGCAAGGGCG
ACACTTGGTGTGAATGCGGTGGCAGAAGGAGTCAGAGTTGGACATGCATT
CACACTGGAGATGCTCTTCACATTCATATTGGTTTTCTTCGTTTTGTCTG
TTACTGATCCTATCAAGAAAGTTGAACCATACGGCCAAACGTTGGGTATT
GGAATTTGCATCTGGGTTGCTCACGTTTGTTTGaTTCCATACACAAATTG
CAGTATCAATCCTGCTCGTTCATTTGGACCTGCAGTTATAATGGACTCAT
GGAAGGATCACTGGATCTTTTGGATCGGTCCATTCGTCGGGGGATTAGTG
GCGGCGCTTTTGTACTCGTGCATTTTCTAcgctgaagaagaagaaaaata
tgaagTGGAACGACAAAGATCTGCAATTCCTCTTCAAAATACTAAAGCTT
CTGCTTAAATGATTCCCCTAGACTGATTAGTTATTACATGACATTTTCAT
CAAGTTGAAACTTTATTATCTCGATCCTATTTTATGCGGGGTCAAAGTGA
CAGGAAAGATTATGGAAAAATTCTCCTTTGTGGAGCGAAATTGTGACCAT
ATTTGTACCCATCCTAAATTTTTAACTGGGttttatgatttgaaaattga
atgaaatGTTCGTGTGCTGAGAAGAACAAAAGGATATTTCAGAAGATTAG
GAGAGCCGTATATTGTCAAACTTTTTATTTCTAGAGTTTAAATATTATGG
ATTTTTTAGCTGCTCAGGCCCAGCAAAACAACCGTAGAAAAAAGGAGGTC
AAAGTCTCCCCAATCTCCCCACTTGCGCCGGGCATGAGCTGCTTTGAGTT
TGTCTGAAAAAATTTTATAACTTAGATACCTTATTATCAGCGGTACTAAC
CtaatatgtatttttttattttttgactatTTACCTTGtattataaaatt
aaaattgttttacaaaaagtgctatGATGACTTTGTGATCATCTTTGGCA
TAGGTCAACGAAGCTCTCAACAGAACCGTCAACGTTTACAATTTGGTAAA
TATTAGAGCTTTCTAATATGACGAGGGTTTAAAATATagttttttaatag
ttttttctGGGTCATTGGTTCTATTTTGAAACATCTCTTGAATTTCCTTA
AGATTCAATCATGGTCAGAAGACGTTGACATTataagtctattcacgata
agtgtgcactcttttttcttttacctataacttttgaaggaattgtTCAA
TCCTCATAAATTTGGTATctttggagagatatttgtaagtgaaacaattt
aaaatcaaaaagtcttctaaaaaattccaaaaatgaagatgaaaatgaag
aagaaaaaaatgaagatcttgtagaaaagtgctataaccatcattttcac
ttaaatgaatccttgatcatcgaacgtcatcactgtgaaaaaatttctaa
aaaataataattcagtcgaaagatatcaaacaaagttataagctgattga
catctaaaaaccctgttttctgctgttttctgctgttttttggggtagtc
aatcacttattaacttcgtatcataactttatattgaataaatatttcag
tgaaatttcttcacaatgATGACTTACTAAGATCAAAGAAtgtctccagt
gaaaatgaaagttatagcacttttctacaagatcttcatttttctcttct
tcattttcatcttcatttttataatttttttaaagactttttgattttaa
attgttccactcagaaatatctctccaacgataccaaatttatgaagatt
gaagaattccttcaaaagtaataggtaaaagaaaaagagtgcacacttat
cgtgaacagactttaggtATTTTAGCGTTTTCCTGAATTTAAAGGGTTAA
AGATCCGGCCAGAATAATATTTTCAGGCTTTCTACtttttttaatcgaat
attttgattttggaggGGAATaatggtttctaggctatattctcagccta
tTCAGACCATTCATAAGCTTTTAAATCCGTAGATTGTAAGCTCCAAAGTC
TTGGAGTAACTtaaagttaaaactctactttccaaccctAAGTTAAGGCA
ATTAAATACTTCTTTTTGTGTCAGATATTATCGCGGTAGTTGTAGTACAT
AAATTCATCTGCACATTAATCAATGACTTTTCcctaatacacccccttct
cacagacccggtaggattttatcagccagtagGGGTAAAAAActgaccaa
aactcgatgggatATTGATACTCCCTTGTTttcttatggctggggatttc
accTCCAtcgttttctagccagaaaattcggtgggttgaaaaaaatagca
caatattttgcagtgaggattttctTTCTTATCCTAATTATTTTAAGCat
gaacaaaaattaaaatataatttttcactggggacgatattttggcaacT
TTTTCCAGTTGGAAGGGTTTCCAGTGGGTCCTGTAAGAAGGGAGTGTTTT
GATCTTCTGAAAACGTAGACTTCATCTCTTCAAAACACCGCAACAGAATA
CAGAAATCAGGTGATATGTTTTAAGTTCGGCCTAAGCCCAAGCAGCCTCA
AAATTGAGAACTAGTATACTTCGTCAAGTTCACCCGATACAGTCTACTAA
AAAAGGCtcaagggctctgaccatagtccaaaagttgattttggtatttg
aacataaaagttatatttcaggttccttaacacttttaacatagaattgc
ctttataaattgctttttaatcgaatcccttaagagtaattaagaattta
attgcaaaaatgacgttatgaactttaaaaagatgttaataat Run BLAST on NCBI protein sequence of Aquaporin protein >TCONS_00022661-protein ID=TCONS_00022661-protein|Name=Aquaporin protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MPYVEIKLGANEIGTWRFWRAVLAEFLGMLLFLLCVTTVALHGTKDNQSA
NNVEAGLGIAFGITTLAQAFGHVSGGHLNPAVTLGLVVGGRTPIIRGFFY
IAAQMVGAIAGSGITYGCTPEAARATLGVNAVAEGVRVGHAFTLEMLFTF
ILVFFVLSVTDPIKKVEPYGQTLGIGICIWVAHVCLIPYTNCSINPARSF
GPAVIMDSWKDHWIFWIGPFVGGLVAALLYSCIFYAEEEEKYEVERQRSA
IPLQNTKASA Run BLAST on NCBI transcript from alignment at sc0000430:180603..189696+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022661 ID=TCONS_00022661|Name=TCONS_00022661|organism=Clytia hemisphaerica|type=transcript|length=9094bp|location=Sequence derived from alignment at sc0000430:180603..189696+ (Clytia hemisphaerica)
ATCAGATCAGAGTGTTGTTTGCCTCTAAACTGAATCGGATCAACTTCACA
ATCCTATTTAGAAACTTTGTTATTTTCCANACTGCCTCGGATCAACTTCA
CAATCCTATTTACAAACTTTGTTATTTTCCGCTTTGGATATTGACGTCGC
GCGCGCAAATTAAATTGTTATGCGTGGAGCAATCTACTGTATAAAGTAAT
AATCGAGTGAATACATTTAATTAGTGGTGCTTAATTTCTAATTGTCTATC
TATAATTGGATGGTCGTACTCGATAATTATTAAAAAGGTGAAGCACAAGA
GACTGCATGAAAAGAGGACGATAATCAGTTTGTTGATTGGTTTGAAGTGG
ACACAACACGAGAAGGTTGACGTTTGACCAAGATTGACTTCATTGGGGGC
GAATCACAGATTTAGAAACTCATATCATTGTCATTTTGGGAGTAAAACGT
CGGTACTTGGACACAGAATATCACAATGCCATACGTTGAAATCAAGCTTG
GAGCTAATGAGATTGGAACATGGAGATTCTGGAGAGCAGTTTTAGCTGAA
TTTCTCGGAATGCTTTTATTTTTGCTTTGCGTCACTACTGTGGCCTTGCA
TGGTACCAAAGACAATCAATCGGCTAATAACGTTGAAGCTGGTTTAGGTA
TTGCATTTGGTATCACAACATTAGCACAAGCGTTTGGCCACGTCAGTGGC
GGTCATCTTAACCCAGCGGTTACGCTTGGGCTTGTAGTTGGTGGACGAAC
ACCTATTATTAGAGGATTCTTTTATATTGCAGCTCAAATGGTCGGAGgta
aaaaaaactatttatcAACTCCATTATATTaggacaaactatataagaat
aNCTCAAATGGTCGGAGGTAAGAAAAACTATTTATCAGCTttattatata
agaacaaattatataagaatataagtgATAAAGCATCGTTGGCCGaaata
tcaaaaacaagttaagagcatttcATATGTCGGGTGATGATGAAATCAAT
GTCAATTTTCCAATGGGGCTGGGGTCTCAGCGGGCCTGTGACACACGGGT
GtattcaaaatcttgatcatACGTAGGTGACCTCCAACTCTAGAAAAGCC
AATTAGATAATGCGCATGCGCTGCTAATAAAGTCATTGATCGAAAATCAC
CTCATCGTAccatcattttgcaaaaaaagaaatttatgaatGGAATTTGC
AAAATGATTGTAATTACGTCCAGAGATAATTACTTTCTATGTTCCAGTAA
TTGCATTAACATCATAAAACTTTTCAGTTGTTGTGGGTGAGGCTTAACTA
TTGTATTTGTGTTATGAcaacatcagaaaaaactttataagaacacagaC
CTCTGCACTGAGGCTTCCGAAATTTTAAGAGCGCTATAAAACTTTACAGA
CTCTATTAAATTACATAGAAAATATGGTTAGAAAGTGccgaaaatgagta
aattttcaGGCTTGATACGCAGGTCCACAACTGAAGCCCACAAAAAGTTC
TGATGTTCTTAAGAAAAGAAAGAATGTGGCGTGTCTTTTCCTTTGTTTGT
TGCTGTGAACTACAGTTTGGTTATTAGAAATTGAATTTATGTCATCCATG
AGATAGGAGGGGATAGGGAGGGGTAATTGCAGAGTATGAAGTGTTTACGT
GTCCGTGGTTCTccaggtacacgttttttataagaacaaactatttaaga
acataaggcttcgatggtcaaaatgttaagaacattttaaggtttcgtga
actctaaaacagccaatttcttaggaaactAGGTAAAAATGGTCATAAAA
TGGTGAGATTTAAAgatagttaagaacatttttaggattaAACCCCAAAG
AGTTAAGAAAATCCaacggcttcaaaaattttggatgttctttaaaaaaa
tgtttattattattatgagaACCAGCAAATTTTTGAAGAGGCTTGTGACT
CTTTTTATTTCATGACACTTTTTAAACTTGTACTCGTTCTTTTCTTATTT
CAAGGGAAAAATTGAGGTATTTAAGGCTTAGTACCCTATTTTACTCTACT
ACATTGACCATTTATTTTGCATAAAGATCGGTCGTTCTAGACTCAGCATT
GTTTGTATTTTTAAGTCtcattgttcttacaaaaagagTGTACAACCAAA
GCTCTCACTGGCCAAGAAATCCTCTTCAAACTAACCAAAGGCTGAAAAAA
CAAACATCGAAGtacattttttaattagatttcATTAAGAGAATAAGGCT
CTAAAGCAAAAGGAAATTCAAGAACAAAACCTAGACGTTGGATATCTAAT
AATAAAGTGTATTGGATGGaggctaaaaaagaaaaaaattgagaaaactg
AGACTTTCAGGCTCTTTTGCGAGACCACGAAATTACCTTGTTTTAATaga
ttcaaatttctttttatctaaaaaaatgtcataacaaagaaaataaaagt
gAAGATGATAATAAATTTTATCGGCgacccaaaaaatatctgcaatctga
ttggttaaaaagagtacaatatatcttgtattttacatgtaaaaatataa
attgacgaaaagatgttgttgcattgtNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCT
acaggctcggaaaatattgtacggaataatctcggaactcgtaaaatatt
tctcatattgtactcgcaactgtccgataactattacatatcgGAATCGA
TAACTTTTCGATCAGCTTTGATTAATTTTCAGCTAACTTCGATTGatgat
acacccctgtgtcacagacccgctatAGGGTCCCAGCCCTACTGGAAGAT
TTGGCGGAGATTTCATCCCGTTGGGGAAATTATTCTACCATTTCTGCCCC
CACTGAGATATTGAGTTTGATAGTTTCATCCCTTTTTGAAATCTAAGGGA
AAGATTTTCATTCCAAATCCAACCACACTGgaattttttgacttgagaac
aatagaatttctatcccattgacattttgtatatattttcatccccactg
tcaCTGTGGAAACATTCTCACGCCGGGGCTTCAAGACAGGGTTGTGTTGA
TACAATATTTACTTAATGATCGACTTCGATTGTAAAATCGTTTAACATTC
GATCACTGTctcacccggggggggggtacttaggcaaaaataggtgctgg
gtatgtgcggacggtaagggtcgggtttttcacttttcaaagtctctcta
agggttacaaaaatcaggaaacttcaaagtagtctctctaagggtgggta
aaatcacgatttttagaaaaaaattttgattttgagagaaaaaattacaa
aaaagtctcactaagggtaggaaatttttgaaaatcagagaaaatctttC
GAAAAAGTCTCTCTAAGGGTCACTTTTTCACTAAAATTTGGGCTCTCTAA
GGGTCGGTTTTCGGAGGTCCCGTCCGCACATACCCCTCATCCAGCAACCC
TAGcccccccccccccgggctgtCTCATGTAACTCTTTCATGTTCAACTC
AAATCCGTATTATCACAGATCGAGTTAATCGAATTATTCAAGGTAATAAA
CTAGAATCAAATCTcataaagaaaataataattaaatGATACAAGTTTTG
AACTTTACCCTGTCCCTTATAGTttgcttttttatgattctgatagcgct
cgcACGAGAGGTTGTATCGCGTCCATCTGTGAAATGCaaggtcggataca
ggagggaggctatcttattcatggagagtaattagtttacatataaggta
atacgataataaagtgcactctcctccattggttatagcctccctctgtg
tCCGAGCCTGAAATGAGTAAGTGTGTAATGAGATAGTTTTCGAGATTGAG
TCaatatactttaatcgtagaaactTTAGCGAGGCTAATTTtggcgtttt
agcgagttttccctattttcgctaaagtAAATCCAAAAGTACCCAAGATT
TTcttgactcgctaatatacgctaaaattagtttcGCTAagatttctacg
attaaagtatatgatattcatgacattttaacagaaaaaacttGGTGTTG
CCACTTATGTCGAGTTAAAACAATGAACTAGTGGCAAACAACTGGGTTAT
TTTTAGTGCTTCAGTATAAAaatgtcatgaatatcatgaatcatgttctt
tttattttatctagCAATTGCTGGTTCAGGGATCACATATGGTTGCACAC
CAGAAGCAGCAAGGGCGACACTTGGTGTGAATGCGGTGGCAGAAGGAGTC
AGAGTTGGACATGCATTCACACTGGAGATGCTCTTCACATTCATATTGGT
TTTCTTCGTTTTGTCTGTTACTGATCCTATCAAGAAAGTTGAACCATACG
GCCAAACGTTGGGTATTGGAATTTGCATCTGGGTTGCTCACGTTTGTTTG
GTAAGCTTTTTTTGCTGCTTTAACATTCCATTTTTCTTTATATGTAAAGC
CCCCATGAAGAGATTCGGTAGGAATATTCAACATTCTGAAGAAAAAGGAT
AATGGTTTTCTATCCTTAATGTTTAACTCCTAAATATTATTTACTAAATG
ACTGAGACagtctttttttcatttctttaagaTTCCATACACAAATTGCA
GTATCAATCCTGCTCGTTCATTTGGACCTGCAGTTATAATGGACTCATGG
AAGGATCACTGGGTAAGGAAACCACATAAGTATAATCTTGATGTCagaat
acacccccttctcacagacccggtagcattctttcagccagtggggagtG
GGGCTAAAAATAACGGACAGAAACTCGATAGGGACCGATATACCCATACA
TTTTATGACTGGGGATCtaaattgttttatttgattgttttcagtgggga
caaaaatgtGAGCACAATTTTGCAACAGGGACGATATTTGGCtaattttt
tccagtgggaagtgggtctgtgagaagttgGTGTCAAAATACTATATAGA
ATTAAATTTGCTTCAcaaagacacccctgtgtcacaaactttttggaaaa
tttgatcgaATTCCACCCCTGTTCGGAAAAATGCCCAACAATTTCAGTTT
CGCTGGGAAATGGACTTTGTTTTTCTCCATTTGAAATTAAATAGgtaaaa
ttgcactccaaaatcatTCCAGTTGGACTTTTTGACgtgggaacaataga
atttctatccccattgagttttcgATAAAAGTTTTCATCTCCACTGTCGG
AAGAAGCTCCACCTGGGTTGAGATGTACAAATGGAAATGTATTAGGTGAT
TAGGAGGGGAGTTAGGATTCTCAAAGTTACGGGTCTATTTCACTTCCATC
CAATGTccaataaagaaaaattaaccaCCTTGAAATTGgtaccgtgaata
gcacaggtcaaaatcatgctgtgccgacgaatcgagattctattcagcgc
gcaatcaacgaagacaaaattAACCATGatgaccatccaagatcttggat
gaagttcaaagttgatatttttattcccgtcgttgaaaacacaacttaag
aaagtcatcaatgctttgtaaaaagagtcagtgatagagaatcataacat
aaagtctgtctattatttcgattcaattaaagtgacattttcataattaa
aagtttagtaattactgttatacatttggggatcatgtaaaagatttctt
tcgaaataaactcatttcaattacacttggagatttctggggaattcgta
aatagtaaactgcatactgatacaatCTGCTAGACATTANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgctta
aaatacaattttgtgaacacgcacataaaactttctactcatagttgtgt
ttcgactcgatactttaattagggacaccctgtatggtaatatttgctcc
ttatctttgattctttctacagtgattatattgacacatgcgcgataaaa
tttctattattggtcttcagaggttaatatattctttgaaaacttaacct
ctgatactcagggtatgtATATGGAGCTTTTCggaatttgataatttttt
atcattctttttCAGATCTTTTGGATCGGTCCATTCGTCGGGGGATTAGT
GGCGGCGCTTTTGTACTCGTGCATTTTCTAcgctgaagaagaagaaaaat
atgaagTGGAACGACAAAGATCTGCAATTCCTCTTCAAAATACTAAAGCT
TCTGCTTAAATGATTCCCCTAGACTGATTAGTTATTACATGACATTTTCA
TCAAGTTGAAACTTTATTATCTCGATCCTATTTTATGCGGGGTCAAAGTG
ACAGGAAAGATTATGGAAAAATTCTCCTTTGTGGAGCGAAATTGTGACCA
TATTTGTACCCATCCTAAATTTTTAACTGGGttttatgatttgaaaattg
aatgaaatGTTCGTGTGCTGAGAAGAACAAAAGGATATTTCAGAAGATTA
GGAGAGCCGTATATTGTCAAACTTTTTATTTCTAGAGTTTAAATATTATG
GATTTTTTAGCTGCTCAGGCCCAGCAAAACAACCGTAGAAAAAAGGAGGT
CAAAGTCTCCCCAATCTCCCCACTTGCGCCGGGCATGAGCTGCTTTGAGT
TTGTCTGAAAAAATTTTATAACTTAGATACCTTATTATCAGCGGTACTAA
CCtaatatgtatttttttattttttgactatTTACCTTGtattataaaat
taaaattgttttacaaaaagtgctatGATGACTTTGTGATCATCTTTGGC
ATAGGTCAACGAAGCTCTCAACAGAACCGTCAACGTTTACAATTTGGTAA
ATATTAGAGCTTTCTAATATGACGAGGGTTTAAAATATagttttttaata
gttttttctGGGTCATTGGTTCTATTTTGAAACATCTCTTGAATTTCCTT
AAGATTCAATCATGGTCAGAAGACGTTGACATTataagtctattcacgat
aagtgtgcactcttttttcttttacctataacttttgaaggaattgtTCA
ATCCTCATAAATTTGGTATctttggagagatatttgtaagtgaaacaatt
taaaatcaaaaagtcttctaaaaaattccaaaaatgaagatgaaaatgaa
gaagaaaaaaatgaagatcttgtagaaaagtgctataaccatcattttca
cttaaatgaatccttgatcatcgaacgtcatcactgtgaaaaaatttcta
aaaaataataattcagtcgaaagatatcaaacaaagttataagctgattg
acatctaaaaaccctgttttctgctgttttctgctgttttttggggtagt
caatcacttattaacttcgtatcataactttatattgaataaatatttca
gtgaaatttcttcacaatgATGACTTACTAAGATCAAAGAAtgtctccag
tgaaaatgaaagttatagcacttttctacaagatcttcatttttctcttc
ttcattttcatcttcatttttataatttttttaaagactttttgatttta
aattgttccactcagaaatatctctccaacgataccaaatttatgaagat
tgaagaattccttcaaaagtaataggtaaaagaaaaagagtgcacactta
tcgtgaacagactttaggtATTTTAGCGTTTTCCTGAATTTAAAGGGTTA
AAGATCCGGCCAGAATAATATTTTCAGGCTTTCTACtttttttaatcgaa
tattttgattttggaggGGAATaatggtttctaggctatattctcagcct
atTCAGACCATTCATAAGCTTTTAAATCCGTAGATTGTAAGCTCCAAAGT
CTTGGAGTAACTtaaagttaaaactctactttccaaccctAAGTTAAGGC
AATTAAATACTTCTTTTTGTGTCAGATATTATCGCGGTAGTTGTAGTACA
TAAATTCATCTGCACATTAATCAATGACTTTTCcctaatacacccccttc
tcacagacccggtaggattttatcagccagtagGGGTAAAAAActgacca
aaactcgatgggatATTGATACTCCCTTGTTttcttatggctggggattt
caccTCCAtcgttttctagccagaaaattcggtgggttgaaaaaaatagc
acaatattttgcagtgaggattttctTTCTTATCCTAATTATTTTAAGCa
tgaacaaaaattaaaatataatttttcactggggacgatattttggcaac
TTTTTCCAGTTGGAAGGGTTTCCAGTGGGTCCTGTAAGAAGGGAGTGTTT
TGATCTTCTGAAAACGTAGACTTCATCTCTTCAAAACACCGCAACAGAAT
ACAGAAATCAGGTGATATGTTTTAAGTTCGGCCTAAGCCCAAGCAGCCTC
AAAATTGAGAACTAGTATACTTCGTCAAGTTCACCCGATACAGTCTACTA
AAAAAGGCtcaagggctctgaccatagtccaaaagttgattttggtattt
gaacataaaagttatatttcaggttccttaacacttttaacatagaattg
cctttataaattgctttttaatcgaatcccttaagagtaattaagaattt
aattgcaaaaatgacgttatgaactttaaaaagatgttaataat Coding sequence (CDS) from alignment at sc0000430:180603..189696+ >TCONS_00022661 ID=TCONS_00022661|Name=TCONS_00022661|organism=Clytia hemisphaerica|type=CDS|length=3132bp|location=Sequence derived from alignment at sc0000430:180603..189696+ (Clytia hemisphaerica)
ATGCCATACGTTGAAATCAAGCTTGGAGCTAATGAGATTGGAACATGGAG
ATTCTGGAGAGCAGTTTTAGCTGAATTTCTCGGAATGCTTTTATTTTTGC
TTTGCGTCACTACTGTGGCCTTGCATGGTACCAAAGACAATCAATCGGCT
AATAACGTTGAAGCTGGTTTAGGTATTGCATTTGGTATCACAACATTAGC
ACAAGCGTTTGGCCACGTCAGTGGCGGTCATCTTAACCCAGCGGTTACGC
TTGGGCTTGTAGTTGGTGGACGAACACCTATTATTAGAGGATTCTTTTAT
ATTGCAGCTCAAATGGTCGGAGCAATTGCTGGTTCAGGGATCACATATGG
TTGCACACCAGAAGCAGCAAGGGCGACACTTGGTGTGAATGCGGTGGCAG
AAGGAGTCAGAGTTGGACATGCATTCACACTGGAGATGCTCTTCACATTC
ATATTGGTTTTCTTCGTTTTGTCTGTTACTGATCCTATCAAGAAAGTTGA
ACCATACGGCCAAACGTTGGGTATTGGAATTTGCATCTGGGTTGCTCACG
TTTGTTTGaTTCCATACACAAATTGCAGTATCAATCCTGCTCGTTCATTT
GGACCTGCAGTTATAATGGACTCATGGAAGGATCACTGGATCTTTTGGAT
CGGTCCATTCGTCGGGGGATTAGTGGCGGCGCTTTTGTACTCGTGCATTT
TCTAcgctgaagaagaagaaaaatatgaagTGGAACGACAAAGATCTGCA
ATTCCTCTTCAAAATACTAAAGCTTCTGCTTAAATGCCATACGTTGAAAT
CAAGCTTGGAGCTAATGAGATTGGAACATGGAGATTCTGGAGAGCAGTTT
TAGCTGAATTTCTCGGAATGCTTTTATTTTTGCTTTGCGTCACTACTGTG
GCCTTGCATGGTACCAAAGACAATCAATCGGCTAATAACGTTGAAGCTGG
TTTAGGTATTGCATTTGGTATCACAACATTAGCACAAGCGTTTGGCCACG
TCAGTGGCGGTCATCTTAACCCAGCGGTTACGCTTGGGCTTGTAGTTGGT
GGACGAACACCTATTATTAGAGGATTCTTTTATATTGCAGCTCAAATGGT
CGGAGCAATTGCTGGTTCAGGGATCACATATGGTTGCACACCAGAAGCAG
CAAGGGCGACACTTGGTGTGAATGCGGTGGCAGAAGGAGTCAGAGTTGGA
CATGCATTCACACTGGAGATGCTCTTCACATTCATATTGGTTTTCTTCGT
TTTGTCTGTTACTGATCCTATCAAGAAAGTTGAACCATACGGCCAAACGT
TGGGTATTGGAATTTGCATCTGGGTTGCTCACGTTTGTTTGaTTCCATAC
ACAAATTGCAGTATCAATCCTGCTCGTTCATTTGGACCTGCAGTTATAAT
GGACTCATGGAAGGATCACTGGATCTTTTGGATCGGTCCATTCGTCGGGG
GATTAGTGGCGGCGCTTTTGTACTCGTGCATTTTCTAcgctgaagaagaa
gaaaaatatgaagTGGAACGACAAAGATCTGCAATTCCTCTTCAAAATAC
TAAAGCTTCTGCTTAAATGCCATACGTTGAAATCAAGCTTGGAGCTAATG
AGATTGGAACATGGAGATTCTGGAGAGCAGTTTTAGCTGAATTTCTCGGA
ATGCTTTTATTTTTGCTTTGCGTCACTACTGTGGCCTTGCATGGTACCAA
AGACAATCAATCGGCTAATAACGTTGAAGCTGGTTTAGGTATTGCATTTG
GTATCACAACATTAGCACAAGCGTTTGGCCACGTCAGTGGCGGTCATCTT
AACCCAGCGGTTACGCTTGGGCTTGTAGTTGGTGGACGAACACCTATTAT
TAGAGGATTCTTTTATATTGCAGCTCAAATGGTCGGAGCAATTGCTGGTT
CAGGGATCACATATGGTTGCACACCAGAAGCAGCAAGGGCGACACTTGGT
GTGAATGCGGTGGCAGAAGGAGTCAGAGTTGGACATGCATTCACACTGGA
GATGCTCTTCACATTCATATTGGTTTTCTTCGTTTTGTCTGTTACTGATC
CTATCAAGAAAGTTGAACCATACGGCCAAACGTTGGGTATTGGAATTTGC
ATCTGGGTTGCTCACGTTTGTTTGaTTCCATACACAAATTGCAGTATCAA
TCCTGCTCGTTCATTTGGACCTGCAGTTATAATGGACTCATGGAAGGATC
ACTGGATCTTTTGGATCGGTCCATTCGTCGGGGGATTAGTGGCGGCGCTT
TTGTACTCGTGCATTTTCTAcgctgaagaagaagaaaaatatgaagTGGA
ACGACAAAGATCTGCAATTCCTCTTCAAAATACTAAAGCTTCTGCTTAAA
TGCCATACGTTGAAATCAAGCTTGGAGCTAATGAGATTGGAACATGGAGA
TTCTGGAGAGCAGTTTTAGCTGAATTTCTCGGAATGCTTTTATTTTTGCT
TTGCGTCACTACTGTGGCCTTGCATGGTACCAAAGACAATCAATCGGCTA
ATAACGTTGAAGCTGGTTTAGGTATTGCATTTGGTATCACAACATTAGCA
CAAGCGTTTGGCCACGTCAGTGGCGGTCATCTTAACCCAGCGGTTACGCT
TGGGCTTGTAGTTGGTGGACGAACACCTATTATTAGAGGATTCTTTTATA
TTGCAGCTCAAATGGTCGGAGCAATTGCTGGTTCAGGGATCACATATGGT
TGCACACCAGAAGCAGCAAGGGCGACACTTGGTGTGAATGCGGTGGCAGA
AGGAGTCAGAGTTGGACATGCATTCACACTGGAGATGCTCTTCACATTCA
TATTGGTTTTCTTCGTTTTGTCTGTTACTGATCCTATCAAGAAAGTTGAA
CCATACGGCCAAACGTTGGGTATTGGAATTTGCATCTGGGTTGCTCACGT
TTGTTTGaTTCCATACACAAATTGCAGTATCAATCCTGCTCGTTCATTTG
GACCTGCAGTTATAATGGACTCATGGAAGGATCACTGGATCTTTTGGATC
GGTCCATTCGTCGGGGGATTAGTGGCGGCGCTTTTGTACTCGTGCATTTT
CTAcgctgaagaagaagaaaaatatgaagTGGAACGACAAAGATCTGCAA
TTCCTCTTCAAAATACTAAAGCTTCTGCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022661-exon-sc0000430-1491911889:180603..181399 | TCONS_00022661-exon-sc0000430-1491911889:180603..181399 | Clytia hemisphaerica | exon |
| TCONS_00022661-exon-sc0000430-1510915933:180603..181399 | TCONS_00022661-exon-sc0000430-1510915933:180603..181399 | Clytia hemisphaerica | exon |
| TCONS_00022661-exon-sc0000430-1575043694:180603..181399 | TCONS_00022661-exon-sc0000430-1575043694:180603..181399 | Clytia hemisphaerica | exon |
| TCONS_00022661-exon-sc0000430-1491911889:185017..185252 | TCONS_00022661-exon-sc0000430-1491911889:185017..185252 | Clytia hemisphaerica | exon |
| TCONS_00022661-exon-sc0000430-1510915933:185017..185252 | TCONS_00022661-exon-sc0000430-1510915933:185017..185252 | Clytia hemisphaerica | exon |
| TCONS_00022661-exon-sc0000430-1575043694:185017..185252 | TCONS_00022661-exon-sc0000430-1575043694:185017..185252 | Clytia hemisphaerica | exon |
| TCONS_00022661-exon-sc0000430-1491911889:185434..185514 | TCONS_00022661-exon-sc0000430-1491911889:185434..185514 | Clytia hemisphaerica | exon |
| TCONS_00022661-exon-sc0000430-1510915933:185434..185514 | TCONS_00022661-exon-sc0000430-1510915933:185434..185514 | Clytia hemisphaerica | exon |
| TCONS_00022661-exon-sc0000430-1575043694:185434..185514 | TCONS_00022661-exon-sc0000430-1575043694:185434..185514 | Clytia hemisphaerica | exon |
| TCONS_00022661-exon-sc0000430-1491911889:187168..189696 | TCONS_00022661-exon-sc0000430-1491911889:187168..189696 | Clytia hemisphaerica | exon |
| TCONS_00022661-exon-sc0000430-1510915933:187168..189696 | TCONS_00022661-exon-sc0000430-1510915933:187168..189696 | Clytia hemisphaerica | exon |
| TCONS_00022661-exon-sc0000430-1575043694:187168..189696 | TCONS_00022661-exon-sc0000430-1575043694:187168..189696 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000430 | supercontig | sc0000430:180603..189696 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005215 | transporter activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006810 | transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006810 |
transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005215 |
transporter activity |
Blast
BLAST of TCONS_00022661 vs. Swiss-Prot (Human)
Match: AQP1 (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3) HSP 1 Score: 167.162 bits (422), Expect = 2.959e-45 Identity = 101/230 (43.91%), Postives = 135/230 (58.70%), Query Frame = 2
Query: 503 ANEIGTWRFWRAVXXXXXXXXXXXXCVTTVAL---HGTKDNQSA--NNVEAGLGIAFGITTLAQAFGHVSGGHLNPAVTLGLVVGGRTPIIRGFFYIAAQMVGAIAGSGITYGCTPEAARATLGVNAVAEGVRVGHAFTLEMLFTFILVFFVLSVTDPIKKVEPYGQTLGIGICIWVAHVCLIPYTNCSINPARSFGPAVIMDSWKDHWIFWIGPFVGGLVAALLYSCIF 1177
A+E FWRAV+AEFL LF+ AL + +NQ+A +NV+ L I TLAQ+ GH+SG HLNPAVTLGL++ + I R YI AQ VGAI + I G T +LG N +A+GV G +E++ T LV VL+ TD ++ L IG+ + + H+ I YT C INPARSFG AVI ++ +HWIFW+GPF+GG +A L+Y I
Sbjct: 2 ASEFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDFIL 231
The following BLAST results are available for this feature:
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