|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022658 ID=TCONS_00022658|Name=TCONS_00022658|organism=Clytia hemisphaerica|type=transcript|length=1781bp
CACGCTTTCACCAAAGACCACCTGGTTACGATTCATCCAATTTCTCGAAA
AGGAATTGTAGCTTGAACAGCAGAAAGTTCTTATCTACAGCTCAGCACCT
CAGAAGAAACGACAGTCACATCGACAAGATCAAAAAGGTAATCGTGGCAA
CAAAGGTTCATCATCAGGCAACACCTATCAGAATGGCCTACCACAAGATC
CAACATGTCCTGTATGCGACAGTTCCATTGGCAGCAATAATCACGTGGCA
ACCATTGGACCCAACAAATGCAACTCATTCAATACTTCACCTGCAAGCAA
TTTGCTGAGATGACACCTGCAAACCGATATTCCTTCCTCCGAAAGCAGGG
ATTTTGTCATCAATGCTTGTTTCCTGGTGCCAACAGTTCAACTGGGTGAC
ATCGAGAAGGGAAGTGTCAAGATACCCATACTGCCCACATGAATCCCATG
CGAAGTATCCCATCCACAAGCATGTTCTTGTCTGTGAGGAACACAAAAGC
CTACCAGCAAATCAAGAAGTGCTTCAACGCTTCAAAGACAGGTACATGAA
GAACGCCAACCTTCCAACATTTGCCAAGGACATCAGCATCTACTATTCAG
CCTTCCCAACGAAGTCAACTCCAGAAGACAAGGATGAGAGAGGAATCTAT
CTTCTTCAATCAATCAACATCAACAACAATCGTTTGACACTATTCTTCGA
CAATGGATGTTCTGACTTTATCGTCAAGAAGTCAGCAATCCCACTTCTTG
GTGGCAACGCAACTCAACTCTCAGCACAACCAAAACGCATTGGAGGAGTT
GGCTGCACATCAACAATGACAACACATGGTGAATACAATGTTCGACTACC
AATGTTCAATGGAGAAGAAGCCCTCGTCTCAGGAATCTGTATGGAACCCA
TCACAGAAACATTCCCACAATATCCATTGACAGAAGTCATGAAAGACATC
CAGCAGGTATACACCGCCAGTGGACCTACATCAATGCTTCCAAAGCCAGT
AGCCACAGTTGGTGGGGATGTACACCTGATGGTGGGTATGAAATTCATTC
GTTATCATCCTAAGCTTATCTTccaactaccttaaaggaagaaattctgg
cgggaatttaatttggcggatggccaaaaaagttttttcagagggaattt
aattcggcggatggacgaaaaaactaaatttggcgggaatttaatttggc
ggatggcagaaaaaagaaattttggctggaatttaatttggcggatttca
gtcaaatccgccaaatccgccaaattttctttccgccaaaatttcttcct
ttaaggtaccaTCTGGTCTGGGGATTTACGAATCTGTTTTCAACAACTTT
GATGGTGGAAGAGTGTGATCAGAGGAACACATGAAATCTTCACTGCAATT
CATCAAACATACTTCACTGAGGACAAAACCTTCAATTTCTTCACTGGTCA
ACTCAAACTAAACTCTACAGATGGGGTATCCAGACAAATCCAGACATCAA
GAGATTATCCTTCACCAACAAACTCAAACGCTTTGACGAAGTTGAATCAT
CAGGCACAATCACTTATCGTTGTATGAAGTGTAGGAATTGCAAATCATGC
AAAAAGAATCAGAACGCATCGAGATGATAAGCATCAAAGAGGAAGCTGAG
GAAGAACTCATCAATTCATCGATTACAATCGATTCCGACACTCAGACTGT
AACTGCCATGTTTCCGCTCATCAAAGAGCCATCAAGACTGGCTCTAAACA
AGGACATTGTCATGAAAGTCTACAATCAACA Run BLAST on NCBI protein sequence of TCONS_00022658-protein >TCONS_00022658-protein ID=TCONS_00022658-protein|Name=TCONS_00022658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
MLVSWCQQFNWVTSRREVSRYPYCPHESHAKYPIHKHVLVCEEHKSLPAN
QEVLQRFKDRYMKNANLPTFAKDISIYYSAFPTKSTPEDKDERGIYLLQS
ININNNRLTLFFDNGCSDFIVKKSAIPLLGGNATQLSAQPKRIGGVGCTS
TMTTHGEYNVRLPMFNGEEALVSGICMEPITETFPQYPLTEVMKDIQQVY
TASGPTSMLPKPVATVGGDVHLMVGMKFIRYHPKLIFQLP Run BLAST on NCBI transcript from alignment at sc0000430:146677..148516+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022658 ID=TCONS_00022658|Name=TCONS_00022658|organism=Clytia hemisphaerica|type=transcript|length=1840bp|location=Sequence derived from alignment at sc0000430:146677..148516+ (Clytia hemisphaerica)
CACGCTTTCACCAAAGACCACCTGGTTACGATTCATCCAATTTCTCGAAA
AGGAATTGTAGCTTGAACAGCAGAAAGTTCTTATCTACAGCTCAGCACCT
CAGAAGAAACGACAGTCACATCGACAAGATCAAAAAGGTAATCGTGGCAA
CAAAGGTTCATCATCAGGCAACACCTATCAGAATGGCCTACCACAAGATC
CAACATGTCCTGTATGCGACAGTTCCATTGGCAGCAATAATCACGTGGCA
ACCATTGGACCCAACAAATGCAACTCATTCAATACTTCACCTGCAAGCAA
TTTGCTGAGATGACACCTGCAAACCGATATTCCTTCCTCCGAAAGCAGGG
ATTTTGTCATCAATGCTTGTTTCCTGGTGCCAACAGTTCAACTGGGTGAC
ATCGAGAAGGGAAGTGTCAAGATACCCATACTGCCCACATGAATCCCATG
CGAAGTATCCCATCCACAAGCATGTTCTTGTCTGTGAGGAACACAAAAGC
CTACCAGCAAATCAAGAAGTGCTTCAACGCTTCAAAGACAGGTACATGAA
GAACGCCAACCTTCCAACATTTGCCAAGGACATCAGCATCTACTATTCAG
CCTTCCCAACGAAGTCAACTCCAGAAGACAAGGATGAGAGAGGAATCTAT
CTTCTTCAATCAATCAACATCAACAACAATCGTTTGACACTATTCTTCGA
CAATGGATGTTCTGACTTTATCGTCAAGAAGTCAGCAATCCCACTTCTTG
GTGGCAACGCAACTCAACTCTCAGCACAACCAAAACGCATTGGAGGAGTT
GGCTGCACATCAACAATGACGACACANTCTCAGCACAACCAAAACGCATT
GGAGGAGTTGGCTGCACATCAACAATGACAACACATGGTGAATACAATGT
TCGACTACCAATGTTCAATGGAGAAGAAGCCCTCGTCTCAGGAATCTGTA
TGGAACCCATCACAGAAACATTCCCACAATATCCATTGACAGAAGTCATG
AAAGACATCCAGCAGGTATACACCGCCAGTGGACCTACATCAATGCTTCC
AAAGCCAGTAGCCACAGTTGGTGGGGATGTACACCTGATGGTGGGTATGA
AATTCATTCGTTATCATCCTAAGCTTATCTTccaactaccttaaaggaag
aaattctggcgggaatttaatttggcggatggccaaaaaagttttttcag
agggaatttaattcggcggatggacgaaaaaactaaatttggcgggaatt
taatttggcggatggcagaaaaaagaaattttggctggaatttaatttgg
cggatttcagtcaaatccgccaaatccgccaaattttctttccgccaaaa
tttcttcctttaaggtaccaTCTGGTCTGGGGATTTACGAATCTGTTTTC
AACAACTTTGATGGTGGAAGAGTGTGATCAGAGGAACACATGAAATCTTC
ACTGCAATTCATCAAACATACTTCACTGAGGACAAAACCTTCAATTTCTT
CACTGGTCAACTCAAACTAAACTCTACAGATGGGGTATCCAGACAAATCC
AGACATCAAGAGATTATCCTTCACCAACAAACTCAAACGCTTTGACGAAG
TTGAATCATCAGGCACAATCACTTATCGTTGTATGAAGTGTAGGAATTGC
AAATCATGCAAAAAGAATCAGAACGCATCGAGATGATAAGCATCAAAGAG
GAAGCTGAGGAAGAACTCATCAATTCATCGATTACAATCGATTCCGACAC
TCAGACTGTAACTGCCATGTTTCCGCTCATCAAAGAGCCATCAAGACTGG
CTCTAAACAAGGACATTGTCATGAAAGTCTACAATCAACA Coding sequence (CDS) from alignment at sc0000430:146677..148516+ >TCONS_00022658 ID=TCONS_00022658|Name=TCONS_00022658|organism=Clytia hemisphaerica|type=CDS|length=1446bp|location=Sequence derived from alignment at sc0000430:146677..148516+ (Clytia hemisphaerica)
ATGCTTGTTTCCTGGTGCCAACAGTTCAACTGGGTGACATCGAGAAGGGA
AGTGTCAAGATACCCATACTGCCCACATGAATCCCATGCGAAGTATCCCA
TCCACAAGCATGTTCTTGTCTGTGAGGAACACAAAAGCCTACCAGCAAAT
CAAGAAGTGCTTCAACGCTTCAAAGACAGGTACATGAAGAACGCCAACCT
TCCAACATTTGCCAAGGACATCAGCATCTACTATTCAGCCTTCCCAACGA
AGTCAACTCCAGAAGACAAGGATGAGAGAGGAATCTATCTTCTTCAATCA
ATCAACATCAACAACAATCGTTTGACACTATTCTTCGACAATGGATGTTC
TGACTTTATCGTCAAGAAGTCAGCAATCCCACTTCTTGGTGGCAACGCAA
CTCAACTCTCAGCACAACCAAAACGCATTGGAGGAGTTGGCTGCACATCA
ACAATGACAACACATGGTGAATACAATGTTCGACTACCAATGTTCAATGG
AGAAGAAGCCCTCGTCTCAGGAATCTGTATGGAACCCATCACAGAAACAT
TCCCACAATATCCATTGACAGAAGTCATGAAAGACATCCAGCAGGTATAC
ACCGCCAGTGGACCTACATCAATGCTTCCAAAGCCAGTAGCCACAGTTGG
TGGGGATGTACACCTGATGGTGGGTATGAAATTCATTCGTTATCATCCTA
AGCTTATCTTccaactaccttaaATGCTTGTTTCCTGGTGCCAACAGTTC
AACTGGGTGACATCGAGAAGGGAAGTGTCAAGATACCCATACTGCCCACA
TGAATCCCATGCGAAGTATCCCATCCACAAGCATGTTCTTGTCTGTGAGG
AACACAAAAGCCTACCAGCAAATCAAGAAGTGCTTCAACGCTTCAAAGAC
AGGTACATGAAGAACGCCAACCTTCCAACATTTGCCAAGGACATCAGCAT
CTACTATTCAGCCTTCCCAACGAAGTCAACTCCAGAAGACAAGGATGAGA
GAGGAATCTATCTTCTTCAATCAATCAACATCAACAACAATCGTTTGACA
CTATTCTTCGACAATGGATGTTCTGACTTTATCGTCAAGAAGTCAGCAAT
CCCACTTCTTGGTGGCAACGCAACTCAACTCTCAGCACAACCAAAACGCA
TTGGAGGAGTTGGCTGCACATCAACAATGACAACACATGGTGAATACAAT
GTTCGACTACCAATGTTCAATGGAGAAGAAGCCCTCGTCTCAGGAATCTG
TATGGAACCCATCACAGAAACATTCCCACAATATCCATTGACAGAAGTCA
TGAAAGACATCCAGCAGGTATACACCGCCAGTGGACCTACATCAATGCTT
CCAAAGCCAGTAGCCACAGTTGGTGGGGATGTACACCTGATGGTGGGTAT
GAAATTCATTCGTTATCATCCTAAGCTTATCTTccaactaccttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022658-exon-sc0000430-1491911889:146677..147484 | TCONS_00022658-exon-sc0000430-1491911889:146677..147484 | Clytia hemisphaerica | exon |
| TCONS_00022658-exon-sc0000430-1510915933:146677..147484 | TCONS_00022658-exon-sc0000430-1510915933:146677..147484 | Clytia hemisphaerica | exon |
| TCONS_00022658-exon-sc0000430-1575043694:146677..147484 | TCONS_00022658-exon-sc0000430-1575043694:146677..147484 | Clytia hemisphaerica | exon |
| TCONS_00022658-exon-sc0000430-1491911889:147544..148516 | TCONS_00022658-exon-sc0000430-1491911889:147544..148516 | Clytia hemisphaerica | exon |
| TCONS_00022658-exon-sc0000430-1510915933:147544..148516 | TCONS_00022658-exon-sc0000430-1510915933:147544..148516 | Clytia hemisphaerica | exon |
| TCONS_00022658-exon-sc0000430-1575043694:147544..148516 | TCONS_00022658-exon-sc0000430-1575043694:147544..148516 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000430 | supercontig | sc0000430:146677..148516 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021109 | Peptidase_aspartic_dom |
Blast
The following BLAST results are available for this feature:
|
