TCONS_00022654 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022654
Unique NameTCONS_00022654
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length750

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022654 ID=TCONS_00022654|Name=TCONS_00022654|organism=Clytia hemisphaerica|type=transcript|length=750bp
CGACAGCAAGTCAAAAAGGAGGCTGTTCTCTAACTATCATTTCTTCCATT
GTTCTGGGGACTGGTaggtttttatttaaaaaatttttcattggcctgaa
tttattattcttaacatttAACTACTATCCTACATTTGAGGTAACAACAT
TTGACCTTTTTAAGCAAGGGTAGTACCAGCAATGCCAGACATTCAGGATA
AATTATCAATTCTTTGctaatgttttgaaattaatcATTTTAGAGTGTTG
TGTCAAATTTGATTGATCGATATTCGTTGACTACTATCGGAAGTGTCTAT
CCTTTTGGGACAATGGGTTGAAACTTTATAATAAGGGATAAGAAGACAAG
TTTGACTGGCAGGTTCACTGCTCCAATTTGCAGCCAAATGTTTTGTGACT
AAATgctaaaacaggtttttttggaaatacttGATAAGTCAAATTATTTT
CGCTATAGGAGTTGACAGAGCAAAGGGCTTCACAAAATGACTTAGTCATC
CAGTATCTTAAATGGAATCACAACCTAACTGTAATGGTATGGAGTACTTT
GAAATTTTAGGGCTGTCCTTTCGAGACAAATACTTGCAGAATTTGTATTA
AATGCTTGTGGCTCCTGAGTAGCTCAACAATGATTGTTGTTCCATTTTGA
TAGAGTCAGTGGCTAGACAAGGACAGTAATGAATTTCAATAGATTTCTCG
AGCATGGATACTTTTGAATAATCAAAGGACCAAGTTCAAGTCATTTATNN
Run BLAST on NCBI

transcript from alignment at sc0000429:262882..263631

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022654 ID=TCONS_00022654|Name=TCONS_00022654|organism=Clytia hemisphaerica|type=transcript|length=750bp|location=Sequence derived from alignment at sc0000429:262882..263631 (Clytia hemisphaerica)
NNATAAATGACTTGAACTTGGTCCTTTGATTATTCAAAAGTATCCATGCT
CGAGAAATCTATTGAAATTCATTACTGTCCTTGTCTAGCCACTGACTCTA
TCAAAATGGAACAACAATCATTGTTGAGCTACTCAGGAGCCACAAGCATT
TAATACAAATTCTGCAAGTATTTGTCTCGAAAGGACAGCCCTAAAATTTC
AAAGTACTCCATACCATTACAGTTAGGTTGTGATTCCATTTAAGATACTG
GATGACTAAGTCATTTTGTGAAGCCCTTTGCTCTGTCAACTCCTATAGCG
AAAATAATTTGACTTATCaagtatttccaaaaaaacctgttttagcATTT
AGTCACAAAACATTTGGCTGCAAATTGGAGCAGTGAACCTGCCAGTCAAA
CTTGTCTTCTTATCCCTTATTATAAAGTTTCAACCCATTGTCCCAAAAGG
ATAGACACTTCCGATAGTAGTCAACGAATATCGATCAATCAAATTTGACA
CAACACTCTAAAATgattaatttcaaaacattagCAAAGAATTGATAATT
TATCCTGAATGTCTGGCATTGCTGGTACTACCCTTGCTTAAAAAGGTCAA
ATGTTGTTACCTCAAATGTAGGATAGTAGTTaaatgttaagaataataaa
ttcaggccaatgaaaaattttttaaataaaaacctACCAGTCCCCAGAAC
AATGGAAGAAATGATAGTTAGAGAACAGCCTCCTTTTTGACTTGCTGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012723XLOC_012723Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022654-exon-sc0000429-1491911889:262882..263631TCONS_00022654-exon-sc0000429-1491911889:262882..263631Clytia hemisphaericaexon
TCONS_00022654-exon-sc0000429-1510915933:262882..263631TCONS_00022654-exon-sc0000429-1510915933:262882..263631Clytia hemisphaericaexon
TCONS_00022654-exon-sc0000429-1575043694:262882..263631TCONS_00022654-exon-sc0000429-1575043694:262882..263631Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000429supercontigsc0000429:262882..263631 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.91086	1.97482	2.33147	1.00582	7.09945	4.37702	6.31755	5.11771	5.45761	3.95729	3.93291	4.52653	3.3726	3.65374	0.208392	0.564581	0	0.441087	0.376328	0.508101	0.683177	0.512956	0	0.389521	6.86825	6.82527	0.655781	0	0.332135	0.513825
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022654 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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