TCONS_00022629 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022629
Unique NameTCONS_00022629
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length495

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022629 ID=TCONS_00022629|Name=TCONS_00022629|organism=Clytia hemisphaerica|type=transcript|length=495bp
TGCTTTCCCAAGAGAGCAGTGGATTGTTAAGATCAACTATAAAAAGAGTA
GAAAAACAAAATATGGACAATCACAATTCAAAGACACAACGTGCTTGTTA
GAAAACTTGGAGCAGTTTAAAGATGAAGGCTTTCGCcacaacaattttgt
tacttttggtCAACATCTCCATGATGGAAACAAGATCCATCAGCGATAAA
GAATTAATTGACCTCCTCAAGGATGTTTTGAAACGAGacgcccaaggacc
caagtcgttcgtccaaggtggagacgtCAAATATCCTTTCACTGATTATA
CAGGACCGCCCTACGACGCCAAACAAACCAAAACCTcacaaaataacaaa
ggcaaagATGTTGTTATAAACTTGAATGTGTTCTAATTATTTTATtggat
aatttttgttttgttaagttAAAAAATACATCATTTTagtcaaaaaataa
atcttgAATGTATTTGTCCGTATTTGTCTTTCACATTATAATCAT
Run BLAST on NCBI

transcript from alignment at sc0000429:206454..207287+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022629 ID=TCONS_00022629|Name=TCONS_00022629|organism=Clytia hemisphaerica|type=transcript|length=834bp|location=Sequence derived from alignment at sc0000429:206454..207287+ (Clytia hemisphaerica)
TGCTTTCCCAAGAGAGCAGTGGATTGTTAAGATCAACTATAAAAAGAGTA
GAAAAACAAAATATGGACAATCACAATTCAAAGACACAACGTGCTTGTTA
GAAAACTTGGAGCAGTTTAAAGATGAAGGCTTTCGCcacaacaattttgt
tacttttggtCAACATCTCCATGATGGAAACAAGATCCATCAGCGATAAA
GAATTAAGTAAGTGACTTGCAAAGTTTATtaaataattgttttgtttgac
CATCTTTAAGGTTTTCACCTCTTGACTCTCGAATATTGAGATAATTTAGC
AAAAAGGTCAAAATTCCTTTGCAAACCCTTATATGTCATCTATAGAATTT
ATTACTTTTGTTTGCAAGTGTCTATCAAAGCTTTCTACGATTACTGTTGG
GTATTCCTTATCCTAATCTGTGTCTCTTTTCTTTTCAGTTGACCTCCTCA
AGGATGTTTTGAAACGAGGtgcccaaggacccaagtcgttcgtccaaggt
ggtgACGCTCAAGGACCCAaatcgttcgtccaaggtggtgacgcccaagg
acccaagtcgttcgtccaaggtggagacgcccaaggacccaagtcgttcg
tccaaggtggagacgtCAAATATCCTTTCACTGATTATACAGGACCGCCC
TACGACGCCAAACAAACCAAAACCTcacaaaataacaaaggcaaagATGT
TGTTATAAACTTGAATGTGTTCTAATTATTTTATtggataatttttgttt
tgttaagttAAAAAATACATCATTTTagtcaaaaaataaatcttgAATGT
ATTTGTCCGTATTTGTCTTTCACATTATAATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012708XLOC_012708Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022629-exon-sc0000429-1491911889:206454..206660TCONS_00022629-exon-sc0000429-1491911889:206454..206660Clytia hemisphaericaexon
TCONS_00022629-exon-sc0000429-1510915933:206454..206660TCONS_00022629-exon-sc0000429-1510915933:206454..206660Clytia hemisphaericaexon
TCONS_00022629-exon-sc0000429-1575043694:206454..206660TCONS_00022629-exon-sc0000429-1575043694:206454..206660Clytia hemisphaericaexon
TCONS_00022629-exon-sc0000429-1491911889:206892..206921TCONS_00022629-exon-sc0000429-1491911889:206892..206921Clytia hemisphaericaexon
TCONS_00022629-exon-sc0000429-1510915933:206892..206921TCONS_00022629-exon-sc0000429-1510915933:206892..206921Clytia hemisphaericaexon
TCONS_00022629-exon-sc0000429-1575043694:206892..206921TCONS_00022629-exon-sc0000429-1575043694:206892..206921Clytia hemisphaericaexon
TCONS_00022629-exon-sc0000429-1491911889:207030..207287TCONS_00022629-exon-sc0000429-1491911889:207030..207287Clytia hemisphaericaexon
TCONS_00022629-exon-sc0000429-1510915933:207030..207287TCONS_00022629-exon-sc0000429-1510915933:207030..207287Clytia hemisphaericaexon
TCONS_00022629-exon-sc0000429-1575043694:207030..207287TCONS_00022629-exon-sc0000429-1575043694:207030..207287Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000429supercontigsc0000429:206454..207287 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2049.42	1965.31	1765.93	1621.47	68.189	63.9889	35.1054	40.3719	3.21227	13.7049	1.89838	1.07297	0.0918564	0	0	0	0.0962754	0.429744	0.263732	0.137988	2.49343	1.49886	895.235	739.268	0.384702	0.118864	36.7296	54.753	473.637	589.4
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022629 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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