TCONS_00022610 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022610
Unique NameTCONS_00022610
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length609

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022610 ID=TCONS_00022610|Name=TCONS_00022610|organism=Clytia hemisphaerica|type=transcript|length=609bp
ttactacaaagtagcttatacttttttcataaGCTCAAGGTAATGcttta
gcatatgcttaatttttccccatatctgagcctagatatgcttacaagtg
caatgcttataaaaaaacatgtagcaaCACACCTTTTTAAAGTATTGTGA
AAAAATACAACGTTGCAGAATATTTCAATGCCGTTTAACTATGCAGATGC
AGTTTTCTTAGCTCATGTGAATTAAAATACCATATATTTATATGATGATA
ACTAAATTTGTATGGTTGAGCtttttaaataataattttttcttctctaa
AAGCTGTATATTATAAATGATTGGGCTctgccagaaaaaaaaacacaata
taTCAGGCTTGGGAGATTTTTCCAAGGACCAGGGGTACTAGATgatgggt
atgtccgagccaaagtttgaaaattgatccTGCGAGAGATTGAATTTCTA
GGATTCTTAGAGATTTTTCTAAGATTCTTACagtctcttttatttgaaac
agtaatttttttgttgttacctggctgttcttatttttgatcTCTTTTAA
CCACAAATTATTCTTGTCCTGCTCTTGTTTTGACGGTGCAAATGCAATTA
ATTGATTTA
Run BLAST on NCBI

transcript from alignment at sc0000428:199859..200467

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022610 ID=TCONS_00022610|Name=TCONS_00022610|organism=Clytia hemisphaerica|type=transcript|length=609bp|location=Sequence derived from alignment at sc0000428:199859..200467 (Clytia hemisphaerica)
TAAATCAATTAATTGCATTTGCACCGTCAAAACAAGAGCAGGACAAGAAT
AATTTGTGGTTAAAAGAgatcaaaaataagaacagccaggtaacaacaaa
aaaattactgtttcaaataaaagagactGTAAGAATCTTAGAAAAATCTC
TAAGAATCCTAGAAATTCAATCTCTCGCAggatcaattttcaaactttgg
ctcggacatacccatcATCTAGTACCCCTGGTCCTTGGAAAAATCTCCCA
AGCCTGAtatattgtgtttttttttctggcagAGCCCAATCATTTATAAT
ATACAGCTTttagagaagaaaaaattattatttaaaaaGCTCAACCATAC
AAATTTAGTTATCATCATATAAATATATGGTATTTTAATTCACATGAGCT
AAGAAAACTGCATCTGCATAGTTAAACGGCATTGAAATATTCTGCAACGT
TGTATTTTTTCACAATACTTTAAAAAGGTGTGttgctacatgttttttta
taagcattgcacttgtaagcatatctaggctcagatatggggaaaaatta
agcatatgctaaagCATTACCTTGAGCttatgaaaaaagtataagctact
ttgtagtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012695XLOC_012695Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022610-exon-sc0000428-1491911889:199859..200467TCONS_00022610-exon-sc0000428-1491911889:199859..200467Clytia hemisphaericaexon
TCONS_00022610-exon-sc0000428-1510915933:199859..200467TCONS_00022610-exon-sc0000428-1510915933:199859..200467Clytia hemisphaericaexon
TCONS_00022610-exon-sc0000428-1575043694:199859..200467TCONS_00022610-exon-sc0000428-1575043694:199859..200467Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000428supercontigsc0000428:199859..200467 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.29498	0.821134	1.57654	1.08277	20.3601	16.7397	11.5778	10.6901	3.18976	6.353	4.16103	5.73087	0.647859	2.06308	1.37624	1.17334	0.979595	0.871097	2.94906	2.38531	2.26889	2.24103	1.6607	1.03491	2.7667	2.24268	3.91628	3.16149	1.06535	1.61162
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022610 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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