TCONS_00022606 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022606
Unique NameTCONS_00022606
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length372

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022606 ID=TCONS_00022606|Name=TCONS_00022606|organism=Clytia hemisphaerica|type=transcript|length=372bp
GGTGGACCTGTTTTTCCTAAAACCTGATTGTTCATTATTTAATATATTAT
TGGTTTCAGCCCAATTGTATATTCTATCTGCTAtgatcttctcaaaaatt
ttgccaattGTAGGTAGGAGACTAATTGGTCTGTGTTCAGATATTTTGAT
GGTATTCACTTTCTTTGGGATCATTTGTATTTTTGCAGTTTTGAGCTGGG
AAGGAAAGACAGAGTTGTTAAGCCAGTCGTTAAAGAGAGAGGTGAGACAA
GGAGCAATTTGTTCAGAGATAGTATggagaagtttgtttttgatcCCATC
ATCACCTGGAGCTTTGTTGGGTTTAAGGCCCTTCAAAACATCCATAACCT
CAGACAGTATGATGGAGCATCA
Run BLAST on NCBI

protein sequence of TCONS_00022606-protein

>TCONS_00022606-protein ID=TCONS_00022606-protein|Name=TCONS_00022606-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MDVLKGLKPNKAPGDDGIKNKLLHTISEQIAPCLTSLFNDWLNNSVFPSQ
LKTAKIQMIPKKVNTIKISEHRPISLLPTIGKIFEKIIADRIYNWAETNN
ILNNEQSGFRKNRST
Run BLAST on NCBI

transcript from alignment at sc0000428:105904..106275

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022606 ID=TCONS_00022606|Name=TCONS_00022606|organism=Clytia hemisphaerica|type=transcript|length=372bp|location=Sequence derived from alignment at sc0000428:105904..106275 (Clytia hemisphaerica)
TGATGCTCCATCATACTGTCTGAGGTTATGGATGTTTTGAAGGGCCTTAA
ACCCAACAAAGCTCCAGGTGATGATGGgatcaaaaacaaacttctccATA
CTATCTCTGAACAAATTGCTCCTTGTCTCACCTCTCTCTTTAACGACTGG
CTTAACAACTCTGTCTTTCCTTCCCAGCTCAAAACTGCAAAAATACAAAT
GATCCCAAAGAAAGTGAATACCATCAAAATATCTGAACACAGACCAATTA
GTCTCCTACCTACaattggcaaaatttttgagaagatcaTAGCAGATAGA
ATATACAATTGGGCTGAAACCAATAATATATTAAATAATGAACAATCAGG
TTTTAGGAAAAACAGGTCCACC

Coding sequence (CDS) from alignment at sc0000428:105904..106275

>TCONS_00022606 ID=TCONS_00022606|Name=TCONS_00022606|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at sc0000428:105904..106275 (Clytia hemisphaerica)
ATGGATGTTTTGAAGGGCCTTAAACCCAACAAAGCTCCAGGTGATGATGG
gatcaaaaacaaacttctccATACTATCTCTGAACAAATTGCTCCTTGTC
TCACCTCTCTCTTTAACGACTGGCTTAACAACTCTGTCTTTCCTTCCCAG
CTCAAAACTGCAAAAATACAAATGATCCCAAAGAAAGTGAATACCATCAA
AATATCTGAACACAGACCAATTAGTCTCCTACCTACaattggcaaaattt
ttgagaagatcaTAGCAGATAGAATATACAATTGGGCTGAAACCAATAAT
ATATTAAATAATGAACAATCAGGTTTTAGGAAAAACAGGTCCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012691XLOC_012691Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022606-exon-sc0000428-1491911889:105904..106275TCONS_00022606-exon-sc0000428-1491911889:105904..106275Clytia hemisphaericaexon
TCONS_00022606-exon-sc0000428-1510915933:105904..106275TCONS_00022606-exon-sc0000428-1510915933:105904..106275Clytia hemisphaericaexon
TCONS_00022606-exon-sc0000428-1575043694:105904..106275TCONS_00022606-exon-sc0000428-1575043694:105904..106275Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022606-proteinTCONS_00022606-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000428supercontigsc0000428:105904..106275 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.217655	0	0.24644	0.241103	0.587039	0.463886	0	0	0	0	0	0.379225	0.144755	0	0.759191	0.423041	1.58706	0.514369	0.442093	1.46147	1.06428	1.06117	0	0	1.11387	0.26433	1.31819	0.732461	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022606 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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