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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022582 ID=TCONS_00022582|Name=TCONS_00022582|organism=Clytia hemisphaerica|type=transcript|length=1635bp
ATTTACTCAATTGCTAACAAAAGAAGTCTGAAGAAATGCTTTATAACATA
ACAAGATGTGTTACAAAAttagtttaaaaaatattttcaacatagAATGT
TTCTACTAACGTACAGTTTTTTGAGTTGCAATCTGGTTTTTATGATCACT
TATCCATTTGTAGTAGTCACTGATATCAAAGTTTTTCAAGAGACTGTCTT
GGCATTTGCGGAAGTTggaatattttctctctttttttttcttgagtGCT
TCTTGTCTCAATAGTTCATCTACAATTTTGAGCTTGTCCTTTAAGTTCGA
AGCTTTCTTGTGCTCTCCAGACCTTTTATAAATTCCTGactgtttatcaa
agttttccAACAGCGCTTTGTTGTAGGGTAGTGCTTTGAGATATTTGTCC
AATATTTTCTCGTCCTTTTGATGGGGTCCAAGCctttttttcagcatttt
cacaACTTTAATCAGGTGTTCTAGGCCCATGTCTAATGCAACATTACCAC
CTGAAGTAACAAAAGAAATCTCATTAAATCTTTCAGTTGCCTTTAGggtc
atccatatagtacgtctATACATCTGTACGCaagaattttccaaatattt
gacactcctccccccttgtacgcagagaacaatagaaatgacgtcattcc
aACAATAGACACTTTGGCTAAACCTCATCTCCCCCTTCACtacgtacgta
ctatatggacggccccttaTTATATCTTAATAGGCCTGTATCTTAAGTTA
ACAAGatcttgttattttttataGGGTTAGATTTTAGAAGTTTTTACTTC
CAATATAATTTTATCATCAATAATAATTTCCTACCGTGTCCATCTTTCTT
CTTGAGGGTTCGGTTCCAAATCAGTCTGTAAGCATCTTGCTCGGACAGCA
AACAAGTCACCTGGCAAAGTAGGTGAAATCCTTCCACTGCATACTTCCTG
CTTCCTGCCCCGTCAACCTTCAAATAGGGAAGCATGAATTTCCATGTACG
AATAATACGATCACCATCACCTTCACTTATTGCATCTTTGAAGTTTCTGA
TGAGCATCATAAACTCCATAACGTTGCATTGATAATTAAACATATCATCA
TCAGTTTTGTTGTCACTTATTTTTGAATTTGGGCATTTTGATTCAATTGG
CTCTAAACCATGTTTCTTAAAATGAGAAAAAGGCATTGTTTGATAAACAA
GACTGTTTAAAGTTTGATTCGCAATTTTATCCATTCGATAGCAAAAATTG
ACTTGTAAAGATCTTCATTTGTGATTCGTGAGGGAGTCACAAgtcattta
aaaattcaaaccCTGTTACAACTATCCAACtttgattgaaatttcaaaag
aacaacCAAGCcatgaattcaaaatttttcctatttcaaaaagaaatact
aGTAACATTTTCTGGCACTCCTTACCTTCAACTCATGGTCCCTCTTCAAT
TTTCCATTATGCTGGTAAGTCTGTTTGCATCCGGGTAAACGACACTTGAA
ACGTCCATTCTCTGTTTGCTCGTCTGATGTGTCACTTTGCTGAAAAATGC
agagatattttttattttatagaatTTCTCAATATTTAGTTTTGTAAGTT
TTTACTTCACTctacttttcaaaaatgttatgctc Run BLAST on NCBI protein sequence of TCONS_00022582-protein >TCONS_00022582-protein ID=TCONS_00022582-protein|Name=TCONS_00022582-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MRFSQSVYCWNDVISIVLCVQGGRSVKYLENSCVQMYRRTIWMTLKATER
FNEISFVTSGGNVALDMGLEHLIKVVKMLKKRLGPHQKDEKILDKYLKAL
PYNKALLENFDKQSGIYKRSGEHKKASNLKDKLKIVDELLRQEALKKKKE
RKYSNFRKCQDSLLKNFDISDYYKWISDHKNQIATQKTVR Run BLAST on NCBI transcript from alignment at sc0000427:135956..137590 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022582 ID=TCONS_00022582|Name=TCONS_00022582|organism=Clytia hemisphaerica|type=transcript|length=1635bp|location=Sequence derived from alignment at sc0000427:135956..137590 (Clytia hemisphaerica)
gagcataacatttttgaaaagtagAGTGAAGTAAAAACTTACAAAACTAA
ATATTGAGAAattctataaaataaaaaatatctctGCATTTTTCAGCAAA
GTGACACATCAGACGAGCAAACAGAGAATGGACGTTTCAAGTGTCGTTTA
CCCGGATGCAAACAGACTTACCAGCATAATGGAAAATTGAAGAGGGACCA
TGAGTTGAAGGTAAGGAGTGCCAGAAAATGTTACtagtatttctttttga
aataggaaaaattttgaattcatgGCTTGgttgttcttttgaaatttcaa
tcaaaGTTGGATAGTTGTAACAGggtttgaatttttaaatgacTTGTGAC
TCCCTCACGAATCACAAATGAAGATCTTTACAAGTCAATTTTTGCTATCG
AATGGATAAAATTGCGAATCAAACTTTAAACAGTCTTGTTTATCAAACAA
TGCCTTTTTCTCATTTTAAGAAACATGGTTTAGAGCCAATTGAATCAAAA
TGCCCAAATTCAAAAATAAGTGACAACAAAACTGATGATGATATGTTTAA
TTATCAATGCAACGTTATGGAGTTTATGATGCTCATCAGAAACTTCAAAG
ATGCAATAAGTGAAGGTGATGGTGATCGTATTATTCGTACATGGAAATTC
ATGCTTCCCTATTTGAAGGTTGACGGGGCAGGAAGCAGGAAGTATGCAGT
GGAAGGATTTCACCTACTTTGCCAGGTGACTTGTTTGCTGTCCGAGCAAG
ATGCTTACAGACTGATTTGGAACCGAACCCTCAAGAAGAAAGATGGACAC
GGTAGGAAATTATTATTGATGATAAAATTATATTGGAAGTAAAAACTTCT
AAAATCTAACCCtataaaaaataacaagatCTTGTTAACTTAAGATACAG
GCCTATTAAGATATAAtaaggggccgtccatatagtacgtacgtaGTGAA
GGGGGAGATGAGGTTTAGCCAAAGTGTCTATTGTtggaatgacgtcattt
ctattgttctctgcgtacaaggggggaggagtgtcaaatatttggaaaat
tcttGCGTACAGATGTATagacgtactatatggatgaccCTAAAGGCAAC
TGAAAGATTTAATGAGATTTCTTTTGTTACTTCAGGTGGTAATGTTGCAT
TAGACATGGGCCTAGAACACCTGATTAAAGTtgtgaaaatgctgaaaaaa
agGCTTGGACCCCATCAAAAGGACGAGAAAATATTGGACAAATATCTCAA
AGCACTACCCTACAACAAAGCGCTGTTggaaaactttgataaacagtCAG
GAATTTATAAAAGGTCTGGAGAGCACAAGAAAGCTTCGAACTTAAAGGAC
AAGCTCAAAATTGTAGATGAACTATTGAGACAAGAAGCactcaagaaaaa
aaaagagagaaaatattccAACTTCCGCAAATGCCAAGACAGTCTCTTGA
AAAACTTTGATATCAGTGACTACTACAAATGGATAAGTGATCATAAAAAC
CAGATTGCAACTCAAAAAACTGTACGTTAGTAGAAACATTctatgttgaa
aatattttttaaactaaTTTTGTAACACATCTTGTTATGTTATAAAGCAT
TTCTTCAGACTTCTTTTGTTAGCAATTGAGTAAAT Coding sequence (CDS) from alignment at sc0000427:135956..137590 >TCONS_00022582 ID=TCONS_00022582|Name=TCONS_00022582|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at sc0000427:135956..137590 (Clytia hemisphaerica)
ATGAGGTTTAGCCAAAGTGTCTATTGTtggaatgacgtcatttctattgt
tctctgcgtacaaggggggaggagtgtcaaatatttggaaaattcttGCG
TACAGATGTATagacgtactatatggatgaccCTAAAGGCAACTGAAAGA
TTTAATGAGATTTCTTTTGTTACTTCAGGTGGTAATGTTGCATTAGACAT
GGGCCTAGAACACCTGATTAAAGTtgtgaaaatgctgaaaaaaagGCTTG
GACCCCATCAAAAGGACGAGAAAATATTGGACAAATATCTCAAAGCACTA
CCCTACAACAAAGCGCTGTTggaaaactttgataaacagtCAGGAATTTA
TAAAAGGTCTGGAGAGCACAAGAAAGCTTCGAACTTAAAGGACAAGCTCA
AAATTGTAGATGAACTATTGAGACAAGAAGCactcaagaaaaaaaaagag
agaaaatattccAACTTCCGCAAATGCCAAGACAGTCTCTTGAAAAACTT
TGATATCAGTGACTACTACAAATGGATAAGTGATCATAAAAACCAGATTG
CAACTCAAAAAACTGTACGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022582-exon-sc0000427-1491911889:135956..137590 | TCONS_00022582-exon-sc0000427-1491911889:135956..137590 | Clytia hemisphaerica | exon |
| TCONS_00022582-exon-sc0000427-1510915933:135956..137590 | TCONS_00022582-exon-sc0000427-1510915933:135956..137590 | Clytia hemisphaerica | exon |
| TCONS_00022582-exon-sc0000427-1575043694:135956..137590 | TCONS_00022582-exon-sc0000427-1575043694:135956..137590 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000427 | supercontig | sc0000427:135956..137590 . |
Blast
The following BLAST results are available for this feature:
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