TCONS_00022573 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022573
Unique NameTCONS_00022573
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022573 ID=TCONS_00022573|Name=TCONS_00022573|organism=Clytia hemisphaerica|type=transcript|length=2308bp
tcagaatcaaaaaaattaaaacgatTATGTGTTGGGTGCTCAAACTGGCA
ATCACAATGTTTGTGTCTGCATCTTTTGTATCAGCAACAAAATGTGGCTT
CAGGAAATGTCCTTTATACGCTGAATGTCAACCAACAACACGTCAATGTA
TTTGTCCTAGTGTGGATGACCATGACAAGGTATATGAACCAGTATGTGGA
AGTAATGGCTTCACTTACAATAATGAAATCGAATTAAAAGAATATGCTTG
CCATAATGGAATGAACATTTACATTGTTAGAGCTGGAAAATGTCCAAAAC
AATATCGCTGTTATAGTCCGAATTGTCATCCTGAATCAATATGTAACGTA
ACAACCGGTAAATGTCAGTGTCCGGGTTTTGATGCGTCCGTATACCAACC
AGCATGCGGAACAGATGGAAAAGATTACCGGAATAAAGAAGAATTGAGAT
ATGAAGCTTGTGTGAGTGGAAGTGACGTCAAAATAGCTGTTTATAATACA
TGTCAAGCACTTGTATCAGCGAGTCGCAACAAAAAGACAAGCAACGAGGA
TGAAAGTTCAGTGAATGTCGCAGTACCTGTCACCATCTGTGTCCTAGTGA
TCGCGATCACTCTCGGAATCGCCTGGTTTTTTTATCATAAGCGTACCAGG
AACACTTTCAACGTTTCCAAGAGAAGTAACGATGTCTTGTTGAGTTGAGT
CCTTTAGAcatgtaaattattttttaacacTTACACATTTTACTAgagat
tttttaataattttatatGTGTACATTATTTGAATTCCATGATCTCTTAC
TTACTTACAGTTAACCAATGGATTTTTGTTGAGattgtttttcacttttt
tgcggCCTCGCTTTCTTTTGGGTTCCACTAAGTAAAGAACAACAGACGTC
ATAATTCCTGATGAAAGTTGCTATACAAAATTTTGTAGAATTACTTGAAC
TTATCAATCTATGCCTCAAAAATACATGTCttcacaaaatttgagcaaaa
aaattaaagtgaaaaaaGCTAGATGTATTTTCggtattttgaaagaatga
tgacATCAAGGTGGCGATGTTGTCATCAATGATGTTAAAATTCTTTGGAG
AATTTACAACGACTTTGGGGGTTTTCAAAAAGACTCcattttgcttcttt
tttaatatttccccacacaaataaattgaaaagatgaactAAATTGCTGA
TAGTTGAAAAAATAACATAAGATAATATATAGATTATATCCTTAtgcaaa
tattcaaatatttaaaacattttgCTTAAAGTGCTGTGCAGATTTTACAT
ATCTGTCCAtcaatgtgcaaaaaatcactaGCCGCACGGTGTTCGGGTTG
GTACAGGCTATGCTGTTATTGTCACTAGCCTTAGTGTTAGTGAAGTCCTT
ACAGGCTGTGGATTATTGTGACCATTGTACTGATCGCATGACTTGTTAGT
GGGTCATCTCTCCCTGGTACGTCATGCCATTTTGGCGTTCCGATATGCGA
TGAATTGGGTCCAGCCACGCTCCCGTAGTGTGACACTAAATCAGTGTTGA
CAAGATGTATTTCAAACGGGACTCCCCTGTACTTATCACCCACCGCACAG
TTATTTAACGGATTAGCCGCCCACGGTCCAGGAGCGTTAAATGCCGCCCC
AGGAATACCCGTAGCTGCACATACACATTCAGCAATAAATGCACCTAGAC
TGTGACCTGTGATAAAGTCGGGTTTGTGGTCATTAGCCCGCTGGACAGCA
TGCTGGTTTGTTGTATGAATGAGGGAACCAAAGGGTGACATAGCGGGGTT
AATGAGAGAAGCATCTTGGAGTATTCCCATCAGGGAAGCAGTACCTCGGT
ATGCTAATACCCTTTTCCCTTTATGTTTTCCACTTGTGATTTCGTATACA
CCATACTGTAACAGATTATTGATGTTTTCACTTGTTTCATTTTGCTCCTG
CTTATATGTTAACTTCAAGGGAAGAGCTTTGAGGTCATTTTCGTTAAAAG
AATAACAATTACTTGCACATTGTACTAACAGCTTCAGTAACTCCGTATCA
TGCAAATCTTTGGTATAGCTTAAATTTAAGGCTTTTCCAGCTTCATGGAA
TACTGCCCCTGCTGCATCTTCTGTCCCCTTGACAACAGTTTTGACTACAC
CGCTGGTAATTTTATTTGCCTCGTCAGCTGCTTGTTGTAATCCTTTCCCA
ATGTCTTCAAAGAAACCAGCCATTTTGCCTAAAATGATATTTGTATAAGA
TTATTGATTACTACTACTTCAAACgctcaaaattgttcaaattaATGGGA
ATAGAGCC
Run BLAST on NCBI

transcript from alignment at sc0000427:102349..107404-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022573 ID=TCONS_00022573|Name=TCONS_00022573|organism=Clytia hemisphaerica|type=transcript|length=5056bp|location=Sequence derived from alignment at sc0000427:102349..107404- (Clytia hemisphaerica)
TCAGAATCAAAAAAATTAAAACGATTATGTGTTGGGTGCTCAAACTGGCA
ATCACAATGTTTGTGTCTGCATCTTTTGTATCAGGTAAACAAGCAATGAG
TCTACTGTTGTTTGATTACCCAGGGTTAGAGCTTAATGCTGTTGCATTAC
AATTCAAACCATCTATTTTGGTAGCTTTCCCAACAATTCATGTTATGCAC
CACTGGAGAGTCTTCTGAGAACTTTTAAATTTTTCCACCCACAATAGAAA
AGGTGACGTATTGGGTGAAAAAAACACATAAAAGTTGCATAATTTCGTGA
AGTCATTGCAGTGGTCAGGCATAAACTCGGATATCCTATTAAATAAGACT
TGTTACACAAACATATGTTATCCAAAGAAATTTATCCTTTCGCCTGACTA
AGCTATGACGCTTGACTGTGAAATCTTGTTCAAGTAATCTATTGATAATC
TCTTAATTCGCCTAAATAGCCTTTACTCATTGAAAATTGACACCACACTT
AATAGTATGATATTAAATAAGGACGGCCTCCTTTGAGTTGGTTTTAAACG
GGTTTTCTTTCGAAAGGTCAGAATTTATCGGGCTAGCTTTTTGAACATTA
AAAAAGCTGTATTTTTCCAACCCATACATCGTGACCGAAGAAGAAAACTT
TTCAGAATAAAAATCCTCGCTTTTGATAATGACTTTCTATTCCCACATCT
TTGCGTCTATAAAAATAATTAAGTATTTGGTAATTGTAGTACTCAGCTGG
TACAATTTTAAGGACTAAGAAACTTTTCCTAGAAAATTAAGCTTGATTAA
AGTTTTGATTGTAATTATGTTTCAGCAACAAAATGTGGCTTCAGGAAATG
TCCTTTATACGCTGAATGTCAACCAACAACACGTCAATGTATTTGTCCTA
GTGTGGATGACCATGACAAGGTATATGAACCAGTATGTGGAAGTAATGGC
TTCACTTACAATAATGAAATCGAATTAAAAGAATATGCTTGCCATAATGG
AATGAACATTTACATTGTTAGAGCTGGAAAATGTCCAAGTGAGTCTTTCG
TGTTTGTTATTTTGATTACCTTCTTAAAATTTCCACATACGTTTTTAATC
GATATATTATTAATCGATATATTGCTTATCAATATACTTCATCAGCATCA
GTAAAATCAAATAACAAATAACGGGCTGAGTTCGTGCTATAGAACAATAA
CCCCACAAAATCTTCTTCGAGTATAGTCTAGTTTGATTCAGTCGCTAGGA
TAAATCTGATGGTAAGTTGTGACTGAATAACAGTATTCCAAAACTTAAAA
TCCGTAAATATAAAAAATCTTTGAAGCGCCGAAATTGCTATATTGTCATA
AGCTGTGTGTCATAGCCTTGTGAATACGGACCTAGTTAACTAGGTTACTT
TGAGTAAAGATAAAGTGTCCTGTTAACATACTAATATGAAGTGATTATAT
TACACTTTCCAAGGTTAGCAGGCTGCTCTAGAAGAGGATAATAGCCCCTT
CCTAACTAGGCTGTTGGCATCCTCTAACGGTCTAGTGCTCCTATTTTACT
AGTGGAATCAGCCACTAACGGATTCGTGCTTCTTTATACTACATGGGGTT
TTGTAGAGGTCTGCGATTCAGACTACTATTCTACCTGCTACGGTTTTGTA
GAGGGTAGCGATTTAGAAAACGCCCGAATTACTCTATTTTAACAGTGAAT
GATTTAGGTGCAGTATACAGGTGTTGAAAGCTCTTCCCTCTCATCGAAGA
TTAAAATTAGAAGAGTCTAGCCTAAATTCGCGTTGTATGAAGTCCATTTT
CAGTGTGAACAACAACTGGCATAAATCATAGCATTTGTCATTTTTCATTT
GATAGCTGACGATTCGATAAAGATGAAGTACTATAATTCAAATTTTGTTT
TTTCTTGTACGCTGCAACAACTGGTATATAAATTCAGTTACCTAGCAGAA
TCGTTCATGTACTCATTCTTTTCTTTCTTCTAGAACAATATCGCTGTTAT
AGTCCGAATTGTCATCCTGAATCAATATGTAACGTAACAACCGGTAAATG
TCAGTGTCCGGGTTTTGATGCGTCCGTATACCAACCAGCATGCGGAACAG
ATGGAAAAGATTACCGGAATAAAGAAGAATTGAGATATGAAGCTTGTGTG
AGTGGAAGTGACGTCAAAATAGCTGTTTATAATACATGTCAAGCACGTAA
GTATCGTTACCTTGGTAACATCTCTTAGTTAGTGAGATAGTTTTAATCTT
ACACCGATTTCATCTCTTTAAGTAAGTAGTCGGAGGCGACCCGAAGGCTC
CTCTTTCGATAGCTATCTACCAGACGGTAAGAGAGGGCGCCACTCTTTCT
CCCTGGATTGCTCCACTTACCCTTGATCCTTCTCTTAATTGCTGAGCATC
AAGCAGAGAGGTATCAAGTACCATTTTGGAAATCTTTGGTATGACCCGGC
TGGGGGCTGAACTCACAACCTTGCGCACCGTAGCCGGGTGCTCTACCACT
GACTACGGTCGCTAATCTCTTTACCCACTGATGAGAACGAATAATATTGG
ACAAGTTTTTTTTTAAATCACACTTTGATAAGACACGTTTTTTATAAATT
TTTTATAAACCCAAGACTGTTTTGGACTCCGAAAAGTTAAAGGTTCAAAG
TATCGATCGTACTATCCGACAAAAAATCTGTGGAGAGAGTTTGATTTCCA
TGTGGGACAAAAACGGATACGTATCAAAAGTTTTTCATCTTTTTATCCAG
TTGTATCAGCGAGTCGCAACAAAAAGACAAGCAACGAGGATGAAAGTTCA
GTGAATGTCGCAGTACCTGTCACCATCTGTGTCCTAGTGATCGCGATCAC
TCTCGGAATCGCCTGGTTTTTTTATCATAAGCGTACCAGGAACACTGTAA
GACTAAAATCTTTATTCGGAAAATATGGAAATCTTTTTGCCTAGCTATCT
TTCCCATAGTTGAAATAAAAGTTTCTATCGATATCCAAATGGGGATAGAA
ATTCTAATGTATGTTCCCAGCTCAAAATAATACAATGGAATGGTTTTGGA
GGGCAATTTTTTCCATTGATTTCAAATTTTCCATTTCCTCTCAAAGGGGG
ATGAAATCAAAGTCAATTTGTTAGTGGGGCTGAAATTGTAGGGTATTTTT
CCCTTCGGGGACGAAATTTTTGCCAAATATTCCAGTGAGGTGAGAGTACC
CTGCCGACCCAGTGACACAGGGGTGTAATTGCTGACCAGCCATGTGAATA
CCTTTATCGGCCCTTTTTACACCGGCCCTTATTGGCGTTATTTTTAGACT
CGTGGCGTAATAAGGACCGGCGTAAAAGGGGTCAGCGTTAAATTAGGGCC
GGCGTAAAAAGGGCCGATAAGGTAATAGCGCGTTGTTTTCTTCTTTTCTT
ATAGTTCAACGTTTCCAAGAGAAGTAACGATGTCTTGTTGAGTTGAGTCC
TTTAGACATGTAAATTATTTTTTAACACTTACACATTTTACTAGAGATTT
TTTAATAATTTTATATGTGTACATTATTTGAATTCCATGATCTCTTACTT
ACTTACAGTTAACCAATGGATTTTTGTTGAGATTGTTTTTCACTTTTTTG
CGGCCTCGCTTTCTTTTGGGTTCCACTAAGTAAAGAACAACAGACGTCAT
AATTCCTGATGAAAGTTGCTATACAAAATTTTGTAGAATTACTTGAACTT
ATCAATCTATGCCTCAAAAATACATGTCTTCACAAAATTTGAGCAAAAAA
ATTAAAGTGAAAAAAGCTAGATGTATTTTCGGTATTTTGAAAGAATGATG
ACATCAAGGTGGCGATGTTGTCATCAATGATGTTAAAATTCTTTGGAGAA
TTTACAACGACTTTGGGGGTTTTCAAAAAGACTCCATTTTGCTTCTTTTT
TAATATTTCCCCACACAAATAAATTGAAAAGATGAACTAAATTGCTGATA
GTTGAAAAAATAACATAAGATAATATATAGATTATATCCTTATGCAAATA
TTCAAATATTTAAAACATTTTGCTTAAAGTGCTGTGCAGATTTTACATAT
CTGTCCATCAATGTGCAAAAAATCACTAGCCGCACGGTGTTCGGGTTGGT
ACAGGCTATGCTGTTATTGTCACTAGCCTTAGTGTTAGTGAAGTCCTTAC
AGGCTGTGGATTATTGTGACCATTGTACTGATCGCATGACTTGTTAGTGG
GTCATCTCTCCCTGGTACGTCATGCCATTTTGGCGTTCCGATATGCGATG
AATTGGGTCCAGCCACGCTCCCGTAGTGTGACACTAAATCAGTGTTGACA
AGATGTATTTCAAACGGGACTCCCCTGTACTTATCACCCACCGCACAGTT
ATTTAACGGATTAGCCGCCCACGGTCCAGGAGCGTTAAATGCCGCCCCAG
GAATACCCGTAGCTGCACATACACATTCAGCAATAAATGCACCTAGACTG
TGACCTGTGATAAAGTCGGGTTTGTGGTCATTAGCCCGCTGGACAGCATG
CTGGTTTGTTGTATGAATGAGGGAACCAAAGGGTGACATAGCGGGGTTAA
TGAGAGAAGCATCTTGGAGTATTCCCATCAGGGAAGCAGTACCTCGGTAT
GCTAATACCCTTTTCCCTTTATGTTTTCCACTTGTGATTTCGTATACACC
ATACTGTAACAGATTATTGATGTTTTCACTTGTTTCATTTTGCTCCTGCT
TATATGTTAACTTCAAGGGAAGAGCTTTGAGGTCATTTTCGTTAAAAGAA
TAACAATTACTTGCACATTGTACTAACAGCTTCAGTAACTCCGTATCATG
CAAATCTTTGGTATAGCTTAAATTTAAGGCTTTTCCAGCTTCATGGAATA
CTGCCCCTGCTGCATCTTCTGTCCCCTTGACAACAGTTTTGACTACACCG
CTGGTAATTTTATTTGCCTCGTCAGCTGCTTGTTGTAATCCTTTCCCAAT
GTCTTCAAAGAAACCAGCCATTTTGCCTAAAATGATATTTGTATAAGATT
ATTGATTACTACTACTTCAAACGCTCAAAATTGTTCAAATTAATGGGAAT
AGAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012660XLOC_012660Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022573-exon-sc0000427-1575043694:107321..107404TCONS_00022573-exon-sc0000427-1575043694:107321..107404Clytia hemisphaericaexon
TCONS_00022573-exon-sc0000427-1575043694:106367..106579TCONS_00022573-exon-sc0000427-1575043694:106367..106579Clytia hemisphaericaexon
TCONS_00022573-exon-sc0000427-1575043694:105209..105421TCONS_00022573-exon-sc0000427-1575043694:105209..105421Clytia hemisphaericaexon
TCONS_00022573-exon-sc0000427-1575043694:104509..104654TCONS_00022573-exon-sc0000427-1575043694:104509..104654Clytia hemisphaericaexon
TCONS_00022573-exon-sc0000427-1575043694:102349..104000TCONS_00022573-exon-sc0000427-1575043694:102349..104000Clytia hemisphaericaexon
TCONS_00022573-exon-sc0000427-1510915933:107321..107404TCONS_00022573-exon-sc0000427-1510915933:107321..107404Clytia hemisphaericaexon
TCONS_00022573-exon-sc0000427-1510915933:106367..106579TCONS_00022573-exon-sc0000427-1510915933:106367..106579Clytia hemisphaericaexon
TCONS_00022573-exon-sc0000427-1510915933:105209..105421TCONS_00022573-exon-sc0000427-1510915933:105209..105421Clytia hemisphaericaexon
TCONS_00022573-exon-sc0000427-1510915933:104509..104654TCONS_00022573-exon-sc0000427-1510915933:104509..104654Clytia hemisphaericaexon
TCONS_00022573-exon-sc0000427-1510915933:102349..104000TCONS_00022573-exon-sc0000427-1510915933:102349..104000Clytia hemisphaericaexon
TCONS_00022573-exon-sc0000427-1491911889:107321..107404TCONS_00022573-exon-sc0000427-1491911889:107321..107404Clytia hemisphaericaexon
TCONS_00022573-exon-sc0000427-1491911889:106367..106579TCONS_00022573-exon-sc0000427-1491911889:106367..106579Clytia hemisphaericaexon
TCONS_00022573-exon-sc0000427-1491911889:105209..105421TCONS_00022573-exon-sc0000427-1491911889:105209..105421Clytia hemisphaericaexon
TCONS_00022573-exon-sc0000427-1491911889:104509..104654TCONS_00022573-exon-sc0000427-1491911889:104509..104654Clytia hemisphaericaexon
TCONS_00022573-exon-sc0000427-1491911889:102349..104000TCONS_00022573-exon-sc0000427-1491911889:102349..104000Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000427supercontigsc0000427:102349..107404 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.149446	0.21427	0.535851	0.674032	0.273523	0.216141	0.598045	0.408676	0.569727	0.628251	0.445229	0.201975	3.47351	2.40485	0.412698	0.823979	0.484039	0.671442	1.70691	0.3089	1.59318	1.27498	0.403961	0.404597	0.574701	1.21774	0.383157	0.348602	0.337682	0.21025
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029058AB_hydrolase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022573 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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