TCONS_00022526 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022526
Unique NameTCONS_00022526
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1303

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022526 ID=TCONS_00022526|Name=TCONS_00022526|organism=Clytia hemisphaerica|type=transcript|length=1303bp
AGTTATAGTGTAAAAtaacaacaaacaaaaaaaaaatggcaGAATCGTGT
AATACATATTGTACTGCGGACGAACGCCCTCCagttgaaaaatctgaaaa
tgtttCAGCAATAATTCCTCATCCCCAAGATATTGGTTACGATGTTGAAT
TTGTAGAAGAAAACATCAAATTGGAGGGTATCACGTGTGTCATTTGCTCT
TTGGTTATGAGGAGCCCGATTCAAGCACACAAATGTGGACACCGCTTTTG
TGCAAAATGTATTGAAAAGTACCACGAAACAAGTGATGGTATTGTCTGTC
CCTTCGACCGTCAACCGATTGAGattttcaaaGATATCGGAAGGGAACGT
GAAATTCTTGAAATGAAGGTCTACTGTAAAAATCGTCCACAATGCAGTTG
GCAATCAGAACTCCGATATTTCGAGGATCATATGAAGGAGTGTCTGTTCG
AAACGATCGATTGTGATATGAATTGTGGTATCAAAGTTCTACGGTCAGAT
ATGAGAAATCATTTGGAAAATGATTGCCTGGTGGAATTTCCTTGTCAATA
TCAATCGATCGGATGTCTATTCACTggCTCAAAAAGATCTTTAACGGAGC
ACATGGTCCTATCAACCAATCAACATCTCTTGTTCCAAATGCAGCATGAA
GTGAGAAAGGTCAAGCAAGATTTCGATGAAAAATTGAAGGCTAAAGATTT
GCAATTAAGGATTCTTGGTGAACGCTTGAAGACAGTTGAAGGGCCTCTTG
ATGACATGATTGAATGGCCAATGAAATGGAAGAAATGCACAATTGAACTG
ATCATAAATGACACAGTCATAGGGTCACATATATTGAGGGGCGTAAACGA
GAATTTCAAGAACTTTAAACGTCCGacttttgctgaaaatgaaACCGGAA
AACGAGGACCATCGAAATTTGTTGACCATAAAGATATACCCCATATCATT
CGAGATGATATAGTaacgatcaaatttgaaattcattagATGGACTGTGA
ACTTGGGATATTTTTCGAGTCCCAATTATTATTGATAGAAAGTTGCTGAA
TTTTCTAGATTGAATTATTCTAAACGATAGGCTTATTTCTATTGACCCGT
AAAAGTCTGTTTCAAGAAAATTAGCGGTCCATACAGTTTTAAACAGTACT
CTCGAtggaaaataaaatataataatttaaaCTCTGTCTATTACCGTGAT
ATGGGTGCTATATGATAATTCGAAATTGCTACGGGGtaatatcagtttgt
ataaactaaaatttatcCTACTTTTGCTAATTTTCTGTCTGAATGAGTCG
TTG
Run BLAST on NCBI

transcript from alignment at sc0000424:224080..233080+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022526 ID=TCONS_00022526|Name=TCONS_00022526|organism=Clytia hemisphaerica|type=transcript|length=9001bp|location=Sequence derived from alignment at sc0000424:224080..233080+ (Clytia hemisphaerica)
AGTTATAGTGTAAAAtaacaacaaacaaaaaaaaaatggcaGAATCGTGT
AATACATATTGTACTGCGGACGAACGCCCTCCagttgaaaaatctgaaaa
tgtttCAGCAATAATTCCTCATCCCCAAGATATTGGTTACGATGTTGAAT
TTGTAGAAGAAAACATCAAATTGGAGGGTATCACGTGTGTCATTTGCTCT
TTGGTTATGAGGAGCCCGATTCAAGCACACAAATGTGGACACCGCTTTTG
TGCAAAATGTATTGAAAAGTACCACGAAACAAGGTATCGCCTTATTAATC
GTCACCCTCTTTGTCTCACTAACTCCCCCTCTCTTCTCTCTCAACCCTTC
CATTGTTTCCCTTTCCTCACCTTTACCCTCTCAATCACTACATCCTTCTT
CTCCTTCCCCCTCTTCTCCACCTCTCTCTTCTCTCTCTCCTTCTCCTCCA
CCTCCCTCTTCTCCAACTCCCTTTTCTCCAACTCCCTCTTCTCCACCTTC
CTCTTCTCCACCTCCCTCTTCTCAAACTCCCTCTTCTCCACCTCCCTCTT
CTCCTTCTCCCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCA
CCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCT
CTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTT
CTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCA
CCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCT
CTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTT
CTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCA
CCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCT
CTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTT
CTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCA
CCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCT
CTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTT
CTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCA
CCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCT
CTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTT
CTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCA
CCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCT
CTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTT
CTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCA
CCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCT
CTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTT
CTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCA
CCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCT
CTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTT
CTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCA
CCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCT
CTCTTCTCCACCTCCCTCTTCTCCACCTCCCTCTTCTCAAACTCCCTCTT
CTCCACCTCCCTCTTCTCCACCTCCCTCTTCTCAAACTCCCTCTTCTCCA
CCTCCCTCTTCTCCACCTCTCTCTTCTCAAACTGCCTTTTCTCTACCTCC
CTCTTAACTCCACCTCCCTCTTCTCCACCTCCCTCTTCTCAAACTGCCTT
TTCTCTACCTCCCTCGTCTCCACCTCCCTCTTCTCAAACTCCCTCTTCTC
AAACTCCCTTTTCTCCACCTCTCTCTTCTCCTTCTCCCTCTTCTCCACCT
CCCTCTTCTCCACCTCCCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTC
TTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTTCACCTCCCTCTTCTC
CAACTCCCTCTTATCCACCTCCCTCTTCTCCTTCTCCCTCTCCTCAAACT
CCTCCATCTCTCTCTTCTCCACCTCCCTCTTCTCAAACTCCCTCTTCTCC
ACCTTCCTCTTCTCAAACTCCCTCTTCTCCACCTCCCTCTTTTCCACCTC
CCTCTTTTCCACCTCCCTCTTTTCAAACTCCCTCTTCTCCACCTCCCTCT
TCTCCTTCTCCCTCTTCTCCACCTCCCTCTTCTCCACCTCCCTCTTCTCC
ACCTCTCTCTTCTCCACCTCTCTCTTCTTCACCTCCCTCTTCTTCACCTC
CCTCTTCTCCACCTCCCTCTTTTCCACCTCCCTCTTTTCAAACTCCCTCT
TCTCCACCTCCCTCTTCTCCTTCTCCCTCTTCTCCACCTCCCTCTTCTCC
ACCTCTCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTC
CCTCTTCTCCACCTCCCTCTTTTCCACCTCCCTCTTTTCAAACTCCCTCT
TCTCCACCTCCCTCTTCTCCTTCTCCCTCTTCTCCTTCTCCCTCTTCTCC
ACCTCCCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTC
TCTCTTCTTCACCTCCCTCTTCTTCACCTCCCTCTTCTCCACCTCCCTCT
TTTCCACCTCCCTCTTTTCCACCTCCCTCTTTTCAAACTCCCTCTTCTCC
TTCTCCCTCTTCTCCTTCTCCCTCTTCTCCACTTCCCTCTTCTCCACCAC
CCTCTTCTCCAACTCTCTCTTCTCCACCTCCCTCTTCTCCACCACCCTCT
TCTCCAACTCTCTCTTCTCCACCTCCCTCTTCTCCGCCACCCTCTTCTCC
TTCTCCCTCTTTTCAAACTCCCTCTTCTCCTTTTCTCTCTTCTCCACCTC
CCTCTTCTCCACCTCTCTCTTCTCAAACTCTCTCTTCTCCACCTCTCCTT
TCTCCACAGCCTTCTTCTCCACAGCCTTTTTCTCCACCTCCCTCTTCTCG
AACTTCCTCTTCTCCTTCTCCCTCTTCTCCTTCTCCCTCTTCTCCAATTC
CATCTTCTTAAACTTCCTCATCTCCACCACCCTTTTCTCCTTCTCCCTCT
TCTCCACATCCCTCTTCTTCACCTCTCTCTTCTCTACCTCCCTCTTCTCC
ACTTTCGCTCTTCCCCAATTCCTTCTTCTCCACCTCCCTCTTCCTTGCTC
ACCTTTCTATATCTATAACCACTTGCAAACAAATTTTCATCCCTTTCTAT
AATGGTGCTGTAGGTGTGATGccttctaaaattttagaatgttGATAGCT
CTGACagtcactttttttcttctcaTTTCAGTGATGGTATTGTCTGTCCC
TTCGACCGTCAACCGATTGAGGTAAAGATTctatattttgtttgtttttg
aattaaaaaacgGATCAATTGACCTTCTTTACTTAAAATCCAATAAATTT
CCTTCGCTCCGGACTTAATTtaataacaaaatatttctagattttcaaaG
ATATCGGAAGGGAACGTGAAATTCTTGAAATGAAGGTCTACTGTAAAAAT
CGTCCACAATGCAGTTGGCAATCAGAACTCCGATATTTCGAGGTACCACT
atcatttgtaacttttttcttctgattGATGGTAAATTTCACAGAAGTCA
CCAGTAGCCTTCTAAGGATATTGTAGAAGGAATTAAAACCTCCTTAGGGG
GTTCAgaatttgttgtttttagtggttctttgatgattttgaaGGGGTAT
TTATTAGTACGTCGCTCACAATTTCTTACAGGATCATATGAAGGAGTGTC
TGTTCGAAACGATCGATTGTGATATGAATTGTGGTATCAAAGTTCTACGG
TCAGATGTAAGGTTTTATTGTATTGATCCTGAAATCATGTACGTGTTCTG
TCTTTGGTATAGGTTTGTAGATTTCAGAGAATCATTGACCATTCCCatag
ttcggaccccccccccttccctaagggggggatgacaccttccaaaaaaa
gtgaagaaggggggggtcagagattttcactaaaaaggggGGGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTATATATAAACATTGCATGGGGAATACTTC
TGTCAACATGTATAATGTGTCAACTATTTTAATGTCAACTATATTTTACT
GTTTCAgaccccccccctttcttaaggggggggatgacaccttccaaaaa
agttaagaagggggggtcagagattttcactaaaaaggggGGGATAGTAA
GAAGGGGGGggtcgtttaagaaggggggcttacatatattgtagattatt
ttccagcactgttatgaaatttggtctacatgaaaggaagttctttattt
tcNCAAACTCCCTCTTCTCCACCTCCCTCTTCTCCTTCTCCCTCTTCTCC
ACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCTCTCTTCTCCACCTC
CCTCTTCTCCACCTCCCTCTTCTCCACCTCCCTCTTTTCCACCTCCCTCT
TTTCAAACTCCCTCTTCTCCACCTCCCTCTTCTCCTTCTCCCTCTTCTCC
TTCTCCCTCTTCTCCACCTCCCTCTTCTCCACCTCCCTCTTCTCCACCTC
TCTCTTCTCCACCTCTCTCTTCTTCACCTCCCTCTTCTTCACCTCCCTCT
TCTCCACCTCCCTCTTTTCCACCTCCCTCTTTTCCACCTCCCTCTTTTCA
AACTCCCTCTTCTCCTTCTCCCTCTTCTCCTTCTCCCTCTTCTCCACCTC
CCTCTTCTCCACCACCCTCTTCTCCAACTCTCTCTTCTCCACCTCCCTCT
TCTCCGCCACCCTCTTCTCCTTCTCCCTCTTTTCAAACTCCCTCTTCTCC
TTTTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCAAACTC
TCTCTTCTCCACCTCTCCTTTCTCCACAGCCTTCTTCTCCACAGCCTTTT
TCTCCACCTCCCTCTTCTCGAACTTCCTCTTCTCCTTCTCCCTCTTCTCC
TTCTCCCTCTTCTCCAATTCCATCTTCTTAAACTTCCTCATCTCCACCAC
CCTTTTCTCCTTCTCCCTCTTCTCCACATCCCTCTTCTTCACCTCTCTCT
TCTCTACCTCCCTCTTCTCCACTTTCGCTCTTCCCCAATTCCTTCTTCTC
CACCTCCCTCTTCCTTGCTCACCTTTCTATATCTATAACCACTTGCAAAC
AAATTTTCATCCCTTTCTATAATGGTGCTGTAGGTGTGATGccttctaaa
attttagaatgttGATAGCTCTGACagtcactttttttcttctcaTTTCA
GTGATGGTATTGTCTGTCCCTTCGACCGTCAACCGATTGAGGTAAAGATT
ctatattttgtttgtttttgaattaaaaaacgGATCAATTGACCTTCTTT
ACTTAAAATCCAATAAATTTCCTTCGCTCCGGACTTAATTtaataacaaa
atatttctagattttcaaaGATATCGGAAGGGAACGTGAAATTCTTGAAA
TGAAGGTCTACTGTAAAAATCGTCCACAATGCAGTTGGCAATCAGAACTC
CGATATTTCGAGGTACCACTatcatttgtaacttttttcttctgattGAT
GGTAAATTTCACAGAAGTCACCAGTAGCCTTCTAAGGATATTGTAGAAGG
AATTAAAACCTCCTTAGGGGGTTCAgaatttgttgtttttagtggttctt
tgatgattttgaaGGGGTATTTATTAGTACGTCGCTCACAATTTCTTACA
GGATCATATGAAGGAGTGTCTGTTCGAAACGATCGATTGTGATATGAATT
GTGGTATCAAAGTTCTACGGTCAGATGTAAGGTTTTATTGTATTGATCCT
GAAATCATGTACGTGTTCTGTCTTTGGTATAGGTTTGTAGATTTCAGAGA
ATCATTGACCATTCCCATAGTTCGGACCCNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAaga
aggggggcttacatatattgtagattattttccagcactgttatgaaatt
tggtctacatgaaaggaagttctttattttctctaaaatttggtattata
tttgccagacttaatttttctttactgtttcccttccctttttaccataa
aaaatttagcccgaaacccttgggggataggcatttttaaaggttgaggg
ggatgccaagaaggggggatcatttaagaaggggggggataaattttgtt
ttgatagaaAAAGGGAGGTACAATTTTGGGTTATTGTATGGATTTCCTCA
AGACAATAAAGCGTGGCTTTGATCTTTTAGTTTAGGATCATTTCCTTTTT
AGATGAGAAATCATTTGGAAAATGATTGCCTGGTGGAATTTCCTTGTCAA
TATCAATCGATCGGATGTCTATTCACTGTAAGTTTTCTCTAGGTTTAGAG
GTCTAATTCGAGACGAAAATGGTTCCCAAACACTATTGTGTGGACACCAA
TAATTTGAAACGTCACCAAGCAAGAAGTTACAAATCAAAGCAGATCAAAA
CCGtttttatacacccctgtcgcacagccccggtggaacttttttcctca
gtgaggataaaaattcttatcaaaatcataaatggggatggaaattctat
tgttccaaggttaaaaaacccaaTGGGGAtgtttttggagtgcaattttt
aaacatggaatttcgagttgggatgaaatcaaggtcgatttcccagtggg
gctgaaattcaagggtattttccaaCCGGGGAGGAaattttgcttaattt
tccGGTGGGGCTGGTGTTCCAGCGGGTCTGtgcgacacaggggtgttttt
attGGAATGGAATTGCTGCGTTCTATTGATCCGAAACGTTTAAAAAACCA
GTATGAACACTTTCTATCCGTAACAAAAACCATACCGAAGCTATGctaac
cgtaacgtctgaacatgttcttaaattgtGTGGAAAGATATTCACAtcat
gtttatttttttcagggCTCAAAAAGATCTTTAACGGAGCACATGGTCCT
ATCAACCAATCAACATCTCTTGTTCCAAATGCAGCATGAAGTGAGAAAGG
TCAAGCAAGATTTCGATGAAAAATTGAAGGCTAAAGATTTGCAATTAAGG
ATTCTTGGTGAACGCTTGAAGACAGTTGAAGGTGAAATTGTCGTATTGag
aaatgaaaagaagaagatgTCAGCTGAAATCAAAACCAAAAACGACAAGA
TGAATCAATTGGACGCAAAGTTAATAGAATTGGAGGATCTGGTTGAGGAT
AACCAACTCAAAAATTATAACAAACTTGGGGATATGGCGAAAGCAATAGA
CggtttgaaagttgaaaatcaaaaagctGTAGCGAAAATAGATACCTTTT
CACATccattcattttgaaaattgataattttgacGAACAATTTAAACAA
GCGAAAACCCAAAATAATATAATCAGATCACGACCATTCCTTTGTTTGGG
CCAATACAAGGGGCAATTGAAGCTATATTTAAATGGCAATAGTAATGGGA
TAGGCACTcatatatcaatatttttttgtcttaTTGAAGGGCCTCTTGAT
GACATGATTGAATGGCCAATGAAATGGAAGAAATGCACAATTGAACTGAT
CATAAATGACACAGTCATAGGGTCACATATATTGAGGGGCGTAAACGAGA
ATTTCAAGAACTTTAAACGTCCGacttttgctgaaaatgaaACCGGAAAA
CGAGGACCATCGAAATTTGTTGACCATAAAGATATACCCCATATCATTCG
AGATGATATAGTaacgatcaaatttgaaattcattagATGGACTGTGAAC
TTGGGATATTTTTCGAGTCCCAATTATTATTGATAGAAAGTTGCTGAATT
TTCTAGATTGAATTATTCTAAACGATAGGCTTATTTCTATTGACCCGTAA
AAGTCTGTTTCAAGAAAATTAGCGGTCCATACAGTTTTAAACAGTACTCT
CGAtggaaaataaaatataataatttaaaCTCTGTCTATTACCGTGATAT
GGGTGCTATATGATAATTCGAAATTGCTACGGGGtaatatcagtttgtat
aaactaaaatttatcCTACTTTTGCTAATTTTCTGTCTGAATGAGTCGTT
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012629XLOC_012629Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022526-exon-sc0000424-1491911889:224080..224362TCONS_00022526-exon-sc0000424-1491911889:224080..224362Clytia hemisphaericaexon
TCONS_00022526-exon-sc0000424-1510915933:224080..224362TCONS_00022526-exon-sc0000424-1510915933:224080..224362Clytia hemisphaericaexon
TCONS_00022526-exon-sc0000424-1575043694:224080..224362TCONS_00022526-exon-sc0000424-1575043694:224080..224362Clytia hemisphaericaexon
TCONS_00022526-exon-sc0000424-1491911889:227661..227700TCONS_00022526-exon-sc0000424-1491911889:227661..227700Clytia hemisphaericaexon
TCONS_00022526-exon-sc0000424-1510915933:227661..227700TCONS_00022526-exon-sc0000424-1510915933:227661..227700Clytia hemisphaericaexon
TCONS_00022526-exon-sc0000424-1575043694:227661..227700TCONS_00022526-exon-sc0000424-1575043694:227661..227700Clytia hemisphaericaexon
TCONS_00022526-exon-sc0000424-1491911889:227820..227921TCONS_00022526-exon-sc0000424-1491911889:227820..227921Clytia hemisphaericaexon
TCONS_00022526-exon-sc0000424-1510915933:227820..227921TCONS_00022526-exon-sc0000424-1510915933:227820..227921Clytia hemisphaericaexon
TCONS_00022526-exon-sc0000424-1575043694:227820..227921TCONS_00022526-exon-sc0000424-1575043694:227820..227921Clytia hemisphaericaexon
TCONS_00022526-exon-sc0000424-1491911889:230281..230355TCONS_00022526-exon-sc0000424-1491911889:230281..230355Clytia hemisphaericaexon
TCONS_00022526-exon-sc0000424-1510915933:230281..230355TCONS_00022526-exon-sc0000424-1510915933:230281..230355Clytia hemisphaericaexon
TCONS_00022526-exon-sc0000424-1575043694:230281..230355TCONS_00022526-exon-sc0000424-1575043694:230281..230355Clytia hemisphaericaexon
TCONS_00022526-exon-sc0000424-1491911889:231282..231356TCONS_00022526-exon-sc0000424-1491911889:231282..231356Clytia hemisphaericaexon
TCONS_00022526-exon-sc0000424-1510915933:231282..231356TCONS_00022526-exon-sc0000424-1510915933:231282..231356Clytia hemisphaericaexon
TCONS_00022526-exon-sc0000424-1575043694:231282..231356TCONS_00022526-exon-sc0000424-1575043694:231282..231356Clytia hemisphaericaexon
TCONS_00022526-exon-sc0000424-1491911889:231945..232110TCONS_00022526-exon-sc0000424-1491911889:231945..232110Clytia hemisphaericaexon
TCONS_00022526-exon-sc0000424-1510915933:231945..232110TCONS_00022526-exon-sc0000424-1510915933:231945..232110Clytia hemisphaericaexon
TCONS_00022526-exon-sc0000424-1575043694:231945..232110TCONS_00022526-exon-sc0000424-1575043694:231945..232110Clytia hemisphaericaexon
TCONS_00022526-exon-sc0000424-1491911889:232519..233080TCONS_00022526-exon-sc0000424-1491911889:232519..233080Clytia hemisphaericaexon
TCONS_00022526-exon-sc0000424-1510915933:232519..233080TCONS_00022526-exon-sc0000424-1510915933:232519..233080Clytia hemisphaericaexon
TCONS_00022526-exon-sc0000424-1575043694:232519..233080TCONS_00022526-exon-sc0000424-1575043694:232519..233080Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000424supercontigsc0000424:224080..233080 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.71452	0.931285	0.36644	0.6871	1.5843	0	0	0.205942	0.409476	2.81758	1.87013	3.1706	1.03658	1.41655	3.02572	3.84547	2.76846	3.01043	1.42298	3.76328	2.7891	3.48449	3.28129	2.15961	0	1.09612	1.61913	0.110928	4.22057	0.635205
Blast
[Close]
BLAST of TCONS_00022526 vs. Swiss-Prot (Human)
Match: TRAF5 (TNF receptor-associated factor 5 OS=Homo sapiens GN=TRAF5 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.131e-20
Identity = 76/291 (26.12%), Postives = 122/291 (41.92%), Query Frame = 3 
Query:  144 VEFVEENIKLEGITCVICSLVMRSPIQAHKCGHRFCAKCIEKYHETSDGIVCPFDRQPI---EIFKDIGREREILEMKVYCKNRPQCSWQSELRYFEDHMKECLFETIDC-DMNCGIKVLRSDMRNHLENDCLV--------------------------EFP-----------------------------CQYQSIGCLFTGSKRSLTEHMVLSTNQHLLFQMQHEVRKVKQ--DFDEKLKAKDLQLRILGERLKTVEGPLDDMIEWPMKWKKCTIELIINDTVIGSHI 833
            VE +EE  K     C  C  V+ +P Q   CGHRFC  CI    E +   +CP D++ I   E+FKD   +RE+L + VYC N P C+ +  L  ++DH+++CLF+ + C +  C   VLR D++ HL   C                            E+P                             C ++  GC  T  +R+L +H   +  +H+   ++  V+  +Q  D  + L+ K+ +++ L E +K +E       +   K        + N  V  SHI
Sbjct:   36 VERLEERYK-----CAFCHSVLHNPHQT-GCGHRFCQHCILSLRELNTVPICPVDKEVIKSQEVFKDNCCKREVLNLYVYCSNAPGCNAKVILGRYQDHLQQCLFQPVQCSNEKCREPVLRKDLKEHLSASCQFRKEKCLYCKKDVVVINLQNHEENLCPEYPVFCPNNCAKIILKTEVDEHLAVCPEAEQDCPFKHYGCAVTDKRRNLQQHEHSALREHMRLVLEKNVQLEEQISDLHKSLEQKESKIQQLAETIKKLEKEFKQFAQLFGK----NGSFLPNIQVFASHI 316
The following BLAST results are available for this feature:
BLAST of TCONS_00022526 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF51.131e-2026.12TNF receptor-associated factor 5 OS=Homo sapiens G... [more]
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