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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022516 ID=TCONS_00022516|Name=TCONS_00022516|organism=Clytia hemisphaerica|type=transcript|length=787bp
GTTCAGGTCAACTTTGAGATTTTGGAATCGAGGACAAGTTCACACCATCG
AATCTGTTCAATCTACCAACGCCTACTAAAGACAAACAACTTTTCAAGTT
GCTCTCAACTCTGGCAAGACTATATGTCCTTCTATCTGATGAATAAGAAT
ctgaaaaaagcaaaagatgTTATGTATACGTCTCTTAGAAATTGCCCTGC
TAGTAAGGATTTGTACTTGTTTGGGATGAAAGAGTTGAAGAATTTCCAAG
AACTGTATGATTTGATGATGGAAAAAGAACTTCGTGTCAAAGTGATCACT
GAAGAACTTGAAGTCTTGTTGGAAGAGTAGGATAAATAAACCAGGCTCGG
CGGTAGCAGGGAGACTTTTGAgcaatgagatttttttctcaaattcctag
ggaattttatctcattttcagcctgctcattttcagcctccccactttta
cggttgttccgccgggcctgaaaACATAAATTGCAAGAAATGAAATTGGA
CTTGACTGAAAGTAGACAAGTTAATATTGAGTTGGATTGGAATCAGGCTT
TTTACATCCAGAATTATATTACACCAAGTCACACAGATGGAATTAAAAAG
TAACAGagatttaaattaattttgaattattatCACTGAACAACTGGTTT
ACTAAATACAAGTTCCAAATCATGAATGTGTCTCTATATGTTACACATCC
TCTAGGTGTTTTTTTTTGGTGTACCTTTGTcacatttcattgtttttgtt
ttggattACTACTTAAAAACTTACCCTTTAATAAGGT Run BLAST on NCBI transcript from alignment at sc0000424:218144..221324+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022516 ID=TCONS_00022516|Name=TCONS_00022516|organism=Clytia hemisphaerica|type=transcript|length=3181bp|location=Sequence derived from alignment at sc0000424:218144..221324+ (Clytia hemisphaerica)
GTTCAGGTCAACTTTGAGATTTTGGAATCGAGGACAAGTTCACACCATCG
AATCTGTTCAATCTACCAACGCCTACTAAAGACAAACAACTTTTCAAGTT
GCTCTCAACTCTGGCAAGACTATATGTCCTTCTATCTGATGAATAAGAAT
ctgaaaaaagcaaaagatgTTATGTATACGTCTCTTAGAAATTGCCCTGC
TAGTAAGGTAGGTACTTCAGATGTATAGTTGCTTTTTCAACTCGACTCCT
CGCTTAGCGAGTAATGGACTTTTTCNACTTATAcacgacagattttcatg
attttttgcacaatgatgtaaaatggcaatgcccaaaatgtgacagagcc
caatttttgaaaaaaatatttttccggccggtagaaccggaaatgtcccg
aaaaaagcggttttttgagattttctcaagattttatcattagttttttg
cgattttttNggacctaccccggtggggtggagctcctataaattaaccc
atgttcgttagttagttagttcgttcgttcgttagttaccagcttttctc
gagattggctcattagttttttctgatttttggcacaaaggtgcatgacc
gtaaaccctcgaatgtgacggagcccgatttgcgaaaaaaaaatttttcc
ggccggtagaaccggaaatgtcccgaaaaaagcggttttttgagattttc
tcaagattttatcattagttttttgcgattttttgcacatagatgcacat
tagtactgccgaaaaggtgtcgaaaaccgtttgccgaaaaaattttttcc
ggtctgtagaaccggaaatgtgccggaaatcgtcgttttttcacatttcc
gtcacattttttcaacttatttaattgtttctttacaaaaaaatgttctt
tatgatgatgcccaaaacttagcatcgtttgattaccaaaaaaaatcatc
ctttgaatccggaactccttaaaaatcgccggaacagccgaaaaccggcg
taaaacggttttccttcaatttttcaacttatactcgacagattttcatg
attttttgcacaatgatgtaaaatggcaatgcccaaaatgtgacagagcc
caattttcgaaaaagaaatttttccggccgctagaaccggaaatgccccg
aaaaaagcggttttttgagatttctcattagttttttgcgattttttgca
catagatgtgccggaaatcgtcgtttttttcacatttccgtcacattttt
tcaacttatttaattgtttctttacagaaaaatgttcttcatgatgatgc
ccaaaacttagcattgtttgatttccaaaaaaatcatcctttgaatccgg
aactccttaaaaattatttcttattcAAAAGTAGTTTTCAAttgtgttga
tagtttctcccaatagatatgctttcatttttcttaatttttttgtattt
tgaccagttatgtcttatgtggttcattgtttcaatgttctttgattagt
tttgataaccaggtaggtccataaaagtatcacttgttctccTCAAGATA
ATGTTCAGCCTTCGCCTTGGTGGAGTATTATACCTTATTGGCCAAAACtc
agtcggccctaagtgactaaattttggcctTGTGACTtgacttagggccg
actaaaatttgggcctactaaaattaaggccggcTAAGTTTTTGGCTGAT
AAGGTATATTAGAGCTCCCGAACCTACCCTAGGATGTATCATATTTTTCA
TACGCGCATTTGTACAAATGGAAGACCCGAAAACTGGTTATGAAAAACCA
CAAGTCGGAGGCCCATTTTAAAGGGAATTTGGGAACGTGGATAGACAGTT
TGATCCTAGTTAGAATTAATTTCTCACCGTTCTCTTAGCGAATAATGggt
tttttccagaaaaagtaCGTGCCCCTCATTCCATGTttaggatatcggat
atccaaaGGATTCAATACTCTTTGGTTATCCAGTCTATAGGACCTtacat
atactgagtgaaaaaaGAAACACTTGGCTTTCTTTTTTGTAGGATTTGTA
CTTGTTTGGGATGAAAGAGGTGAAGAATTTCCAAGAACTGTATGATTTGA
TGATGGAAAAAGAACTTCGTGTCAAAGTGATCACTGAAGAACTTGAAGTC
TTGTTGGAAGAGTAGGATAAATAAACCAGGCTCGGCGGTAGCAGGGAGAC
TTTTGAgcaatgagatttttttctcaaattcctagggaattttatctcat
tttcagccttctcattttcagcctccccacttttacggttgttccgccgg
gcctgaaaACATAAATTGCAAGAAATGAAATTGGACTTGACTGAAAGTAG
ACAATTTAATATTGAGTTGGATTGGAATCAGGCTTTTTACATCCAGAATT
ATATTACACCAAGTCACACAGATGGAATTAAAAAGTAACAGagatttaaa
ttaattttgaattattatCACTGAACAACTGGTTTACTAAATACAAGTTC
CAAATCATGAATGTGTCTCTATATGTTACACATNATATCCAGTCTTTAGG
ACCTtacatatactgagtgaaaaaaGAAACACTTGGCTTTCTTTTTTGTA
GGATTTGTACTTGTTTGGGATGAAAGAGTTGAAGAATTTCCAAGAACTGT
ATGATTTGATGATGGAAAAAGAACTTCGTGTCAAAGTGATCACTGAAGAA
CTTGAAGTCTTGTTGGAAGAGTAGGATAAATAAACCAGGCTCGGCGGTAG
CAGGGAGACTTTTGAgcaatgagatttttttctcaaattcctagggaatt
ttatctcattttcagcctgctcattttcagcctccccacttttacggttg
ttccgccgggcctgaaaACATAAATTGCAAGAAATGAAATTGGACTTGAC
TGAAAGTAGACAAGTTAATATTGAGTTGGATTGGAATCAGGCTTTTTACA
TCCAGAATTATATTACACCAAGTCACACAGATGGAATTAAAAAGTAACAG
agatttaaattaattttgaattattatCACTGAACAACTGGTTTACTAAA
TACAAGTTCCAAATCATGAATGTGTCTCTATATGTTACACATCCTCTAGG
TGTTTTTTTTTGGTGTACCTTTGTcacatttcattgtttttgttttggat
tACTACTTAAAAACTTACCCTTTAATAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022516-exon-sc0000424-1491911889:218144..218350 | TCONS_00022516-exon-sc0000424-1491911889:218144..218350 | Clytia hemisphaerica | exon |
| TCONS_00022516-exon-sc0000424-1510915933:218144..218350 | TCONS_00022516-exon-sc0000424-1510915933:218144..218350 | Clytia hemisphaerica | exon |
| TCONS_00022516-exon-sc0000424-1575043694:218144..218350 | TCONS_00022516-exon-sc0000424-1575043694:218144..218350 | Clytia hemisphaerica | exon |
| TCONS_00022516-exon-sc0000424-1491911889:220186..220212 | TCONS_00022516-exon-sc0000424-1491911889:220186..220212 | Clytia hemisphaerica | exon |
| TCONS_00022516-exon-sc0000424-1510915933:220186..220212 | TCONS_00022516-exon-sc0000424-1510915933:220186..220212 | Clytia hemisphaerica | exon |
| TCONS_00022516-exon-sc0000424-1575043694:220186..220212 | TCONS_00022516-exon-sc0000424-1575043694:220186..220212 | Clytia hemisphaerica | exon |
| TCONS_00022516-exon-sc0000424-1491911889:220772..221324 | TCONS_00022516-exon-sc0000424-1491911889:220772..221324 | Clytia hemisphaerica | exon |
| TCONS_00022516-exon-sc0000424-1510915933:220772..221324 | TCONS_00022516-exon-sc0000424-1510915933:220772..221324 | Clytia hemisphaerica | exon |
| TCONS_00022516-exon-sc0000424-1575043694:220772..221324 | TCONS_00022516-exon-sc0000424-1575043694:220772..221324 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000424 | supercontig | sc0000424:218144..221324 + |
Blast
The following BLAST results are available for this feature:
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