|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022504 ID=TCONS_00022504|Name=TCONS_00022504|organism=Clytia hemisphaerica|type=transcript|length=922bp
TGAATATTGGTTTAGATGCTTTGCAAGTATTCCGTATTCTTTTCAAGGCA
ATACCGCTAAAAACTCCAAATCGAACCGAGATCATCAAATCACATGCTGC
TACATTGCTTGAGAATAATGGTTGGCAGAAAGATGGCGATCAAATTATTA
CCATACACGACGTTGAAAGTTATCAAGAAAACATATTTAATTTCACAATT
AATGATATACTCCTATTAGAGCACAATCTAAGAAAAACTAAGTTATCGTT
ACAACTGAATGACGTCCCATTGATATTGTTGCCGacggaaaacttttgtt
gtggaTCCTTGTTACACCTGAAATCCTATTTCGCAAGTGTCACTGTGTAT
GATATCAACCAAGTGACCATCGCAAAGTCATATCATTCacaatgcaaaaa
atgtaaaaggacGTTTTCGTATGGATTTATTGATGAAAAAAGTGGTATGC
GGAAACTCAATGTTGATCGAGATTACATCATGTTTAACAACGTTACAGCA
TACCGTAAACGATTGATGAAATATATCGATAATATGATAAAAATAGGAGC
TGTCTCGTTTGAGAAGCTGAGTGAAATGTTGGAGGGCAACTGGGAAAGTA
ATAAAATCAATCCTGATAGAATAGAAGAGGCATGGTTTATTTACCGAATT
TTAGAATTTATGAATGTTTTTCCGGAATGGCCACGTCATACTTCAAGCAA
AGCATTAGATTTGGAATCATTATGTCATTTCAATTTTCCagaaataaaaa
gaatgattGATAGTCTATGGATAAATCACATCTGTTCCGAAGTTGGTTGT
NAtgccattttttatccattcacaccatccacatcacattttatataata
aatatttttcgtgcttttgtcttgttaggcatcatattttatgattttgt
cattatttttgtaagtaagtgt Run BLAST on NCBI protein sequence of TCONS_00022504-protein >TCONS_00022504-protein ID=TCONS_00022504-protein|Name=TCONS_00022504-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
NIGLDALQVFRILFKAIPLKTPNRTEIIKSHAATLLENNGWQKDGDQIIT
IHDVESYQENIFNFTINDILLLEHNLRKTKLSLQLNDVPLILLPTENFCC
GSLLHLKSYFASVTVYDINQVTIAKSYHSQCKKCKRTFSYGFIDEKSGMR
KLNVDRDYIMFNNVTAYRKRLMKYIDNMIKIGAVSFEKLSEMLEGNWESN
KINPDRIEEAWFIYRILEFMNVFPEWPRHTSSKALDLESLCHFNFPEIKR
MIDSLWINHICSEVGCXAIFYPFTPSTSHFI Run BLAST on NCBI transcript from alignment at sc0000424:117487..118671+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022504 ID=TCONS_00022504|Name=TCONS_00022504|organism=Clytia hemisphaerica|type=transcript|length=1185bp|location=Sequence derived from alignment at sc0000424:117487..118671+ (Clytia hemisphaerica)
TGAATATTGGTTTAGATGCTTTGCAAGTATTCCGTATTCTTTTCAAGGCA
ATACCGCTAAAAACTCCAAATCGAACCGAGATCATCAAATCACATGCTGC
TACATTGCTTGAGAATAATGGTTGGCAGAAAGATGGCGATCAAATTATTA
CCATACACGACGTTGAAAGTTATCAAGAAAACATATTTAATTTCACAATT
AATGATATACTCCTATTAGAGCACAATCTAAGAAAAACTAAGTTATCGTT
ACAACTGAATGACGTCCCATTGATATTGTTGCCGacggaaaacttttgtt
gtggaTCCTTGTTACACCTGAAATCCTATTTCGCAAGTGTCACTGTGTAT
GATATCAACCAAGTGACCATCGCAAAGTCATATCATTCacaatgcaaaaa
atgtaaaaggacGTTTTCGTATGGATTTATTGATGAAAAAAGTGGTATGT
TACTTAGTACATTTTCCTCCCGATATTAATTTGTTATTATATCATTAACT
CATGGCAAACCAATCCTTTACAATTACCCATTATTATTTggattaaaatt
ttctcagctaatcaaaaaaattatgttttggtaACAGGATCAACAGCATG
AGAGGTTAAGATAAACTTTTTTTCTCGTTTAGGTATGCAGAAACTCAATG
TTGNGGTAACAGGATTAACAGCATGAGAGGTTAAGATAAACTTTTTTTCT
CGTTTAGGTATGCGGAAACTCAATGTTGATCGAGATTACATCATGTTTAA
CAACGTTACAGCATACCGTAAACGATTGATGAAATATATCGATAATATGA
TAAAAATAGGAGCTGTCTCGTTTGAGAAGCTGAGTGAAATGTTGGAGGGC
AACTGGGAAAGTAATAAAATCAATCCTGATAGAATAGAAGAGGCATGGTT
TATTTACCGAATTTTAGAATTTATGAATGTTTTTCCGGAATGGCCACGTC
ATACTTCAAGCAAAGCATTAGATTTGGAATCATTATGTCATTTCAATTTT
CCagaaataaaaagaatgattGATAGTCTATGGATAAATCACATCTGTTC
CGAAGTTGGTTGTNAtgccattttttatccattcacaccatccacatcac
attttatataataaatatttttcgtgcttttgtcttgttaggcatcatat
tttatgattttgtcattatttttgtaagtaagtgt Coding sequence (CDS) from alignment at sc0000424:117487..118671+ >TCONS_00022504 ID=TCONS_00022504|Name=TCONS_00022504|organism=Clytia hemisphaerica|type=CDS|length=1692bp|location=Sequence derived from alignment at sc0000424:117487..118671+ (Clytia hemisphaerica)
AATATTGGTTTAGATGCTTTGCAAGTATTCCGTATTCTTTTCAAGGCAAT
ACCGCTAAAAACTCCAAATCGAACCGAGATCATCAAATCACATGCTGCTA
CATTGCTTGAGAATAATGGTTGGCAGAAAGATGGCGATCAAATTATTACC
ATACACGACGTTGAAAGTTATCAAGAAAACATATTTAATTTCACAATTAA
TGATATACTCCTATTAGAGCACAATCTAAGAAAAACTAAGTTATCGTTAC
AACTGAATGACGTCCCATTGATATTGTTGCCGacggaaaacttttgttgt
ggaTCCTTGTTACACCTGAAATCCTATTTCGCAAGTGTCACTGTGTATGA
TATCAACCAAGTGACCATCGCAAAGTCATATCATTCacaatgcaaaaaat
gtaaaaggacGTTTTCGTATGGATTTATTGATGAAAAAAGTGGTATGCGG
AAACTCAATGTTGATCGAGATTACATCATGTTTAACAACGTTACAGCATA
CCGTAAACGATTGATGAAATATATCGATAATATGATAAAAATAGGAGCTG
TCTCGTTTGAGAAGCTGAGTGAAATGTTGGAGGGCAACTGGGAAAGTAAT
AAAATCAATCCTGATAGAATAGAAGAGGCATGGTTTATTTACCGAATTTT
AGAATTTATGAATGTTTTTCCGGAATGGCCACGTCATACTTCAAGCAAAG
CATTAGATTTGGAATCATTATGTCATTTCAATTTTCCagaaataaaaaga
atgattGATAGTCTATGGATAAATCACATCTGTTCCGAAGTTGGTTGTNA
tgccattttttatccattcacaccatccacatcacattttatataaAATA
TTGGTTTAGATGCTTTGCAAGTATTCCGTATTCTTTTCAAGGCAATACCG
CTAAAAACTCCAAATCGAACCGAGATCATCAAATCACATGCTGCTACATT
GCTTGAGAATAATGGTTGGCAGAAAGATGGCGATCAAATTATTACCATAC
ACGACGTTGAAAGTTATCAAGAAAACATATTTAATTTCACAATTAATGAT
ATACTCCTATTAGAGCACAATCTAAGAAAAACTAAGTTATCGTTACAACT
GAATGACGTCCCATTGATATTGTTGCCGacggaaaacttttgttgtggaT
CCTTGTTACACCTGAAATCCTATTTCGCAAGTGTCACTGTGTATGATATC
AACCAAGTGACCATCGCAAAGTCATATCATTCacaatgcaaaaaatgtaa
aaggacGTTTTCGTATGGATTTATTGATGAAAAAAGTGGTATGCGGAAAC
TCAATGTTGATCGAGATTACATCATGTTTAACAACGTTACAGCATACCGT
AAACGATTGATGAAATATATCGATAATATGATAAAAATAGGAGCTGTCTC
GTTTGAGAAGCTGAGTGAAATGTTGGAGGGCAACTGGGAAAGTAATAAAA
TCAATCCTGATAGAATAGAAGAGGCATGGTTTATTTACCGAATTTTAGAA
TTTATGAATGTTTTTCCGGAATGGCCACGTCATACTTCAAGCAAAGCATT
AGATTTGGAATCATTATGTCATTTCAATTTTCCagaaataaaaagaatga
ttGATAGTCTATGGATAAATCACATCTGTTCCGAAGTTGGTTGTNAtgcc
attttttatccattcacaccatccacatcacattttatataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022504-exon-sc0000424-1491911889:117487..117930 | TCONS_00022504-exon-sc0000424-1491911889:117487..117930 | Clytia hemisphaerica | exon |
| TCONS_00022504-exon-sc0000424-1510915933:117487..117930 | TCONS_00022504-exon-sc0000424-1510915933:117487..117930 | Clytia hemisphaerica | exon |
| TCONS_00022504-exon-sc0000424-1575043694:117487..117930 | TCONS_00022504-exon-sc0000424-1575043694:117487..117930 | Clytia hemisphaerica | exon |
| TCONS_00022504-exon-sc0000424-1491911889:118194..118671 | TCONS_00022504-exon-sc0000424-1491911889:118194..118671 | Clytia hemisphaerica | exon |
| TCONS_00022504-exon-sc0000424-1510915933:118194..118671 | TCONS_00022504-exon-sc0000424-1510915933:118194..118671 | Clytia hemisphaerica | exon |
| TCONS_00022504-exon-sc0000424-1575043694:118194..118671 | TCONS_00022504-exon-sc0000424-1575043694:118194..118671 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000424 | supercontig | sc0000424:117487..118671 + |
Blast
The following BLAST results are available for this feature:
|
