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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022503 ID=TCONS_00022503|Name=TCONS_00022503|organism=Clytia hemisphaerica|type=transcript|length=519bp
cggcaagACTTGCACATTTTTCTGCTCTTCATTTGATCTTTGTATGCGGA
AACTCAATGTTGATCGAGATTACATCATGTTTAACAACGTTACAGCATAC
CGTAAACGATTGATGAAATATATCGATAATATGATAAAAATAGGAGCTGT
CTCGTTTGAGAAGCTGAGTGAAATGTTGGAGGGCAACTGGGAAAGTAATA
AAATCAATCCTGATAGAATAGAAGAGGCATGGTTTATTTACCGAATTTTA
GAATTTATGAATGTTTTTCCGGAATGGCCACGTCATACTTCAAGCAAAGC
ATTAGATTTGGAATCATTATGTCATTTCAATTTTCCagaaataaaaagaa
tgattGATAGTCTATGGATAAATCACATCTGTTCCGAAGTTGGTTGTNAt
gccattttttatccattcacaccatccacatcacattttatataataaat
atttttcgtgcttttgtcttgttaggcatcatattttatgattttgtcat
tatttttgtaagtaagtgt Run BLAST on NCBI transcript from alignment at sc0000424:109873..118671+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022503 ID=TCONS_00022503|Name=TCONS_00022503|organism=Clytia hemisphaerica|type=transcript|length=8799bp|location=Sequence derived from alignment at sc0000424:109873..118671+ (Clytia hemisphaerica)
cggcaagACTTGCACATTTTTCTGCTCTTCATTTGATCTTTGTGAGTTTT
CTTAAGGTTCATGTCTTTTATCCTCGTGGTTTTGCCTTTTGTCTGTTTTA
ACCGGTATTTAATTTACTTGTTGTTTCGCATTCAATGTTCATTTATTTTa
ggcaaaattccaagcacttttttaGTGCTTTTAGCTTAGGTTAGGCCGAT
agaatagactttttttaaagaggcagccatgttgaataattatgtactcc
agcataaaaacaatgatacagggggctcccccaggggctggcgtgacacg
tgaatgacccttttttctgtcgtgaatacgtgaattggactttttcggcg
cgtgaatacgtgaattgagaNGTGAAACGGATAGGACGAAGAGTTCATGT
TTAATTTCACaaaagcatatactttattttCAACAGAAAGATTTGGTTGA
AGATCCAAATTAAAGTCTGCTTTCGTATTTTATGATGTAGACTTTTctga
aatatgtttttcttataGTTCGGGGCAATCTTAACAGGGATATAATTAGT
GCAACAATTTTAACAGGTCATGACGGTGTTACCGACTCAATTTGTAATTA
ATTACCAACTCAGGTGTAATTAACTACGGTATTCCCGTATGAATTATATT
GAAGTAATTTGCAAAGTGTTTCGGGTTGTTATGTCGGAAAGTATGATCTT
CTTGATCCTCCTTTCGCAGCCTTCtatcataattttttattctttatcag
AGCCAGGTTTAAAAGAATTCATAAATCGAGGCCAAAAGATATTAGAAAAC
TTGTTAAGCttgaaagcaagaaacttcagaaactgaatccctttaaacat
caaaaaaaatattacgcATTTTGAGGAAGTAAGAACTATCTATTGTTGCA
GTAACAAAATCAGACTATTGCTAAAAGTTCTAAAAAGCTTTGGATGACAT
GGAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTCGAAACGAAAGCTAAACGAAACATAACCGAAGCAttcgtttcatt
ttcgtttaaaaatgaaacaatatttggagacgctcccttatattgttact
aaatgcagtacacaaaatgataccgcatTAACTTGGAGACAGGGAACGGT
ATTTGCTCTTTTAATGATTTACATAAATAGGTAGTTCTAATAAATCTTGT
ATAAATGCATCATCGAACATTCAGAAGAAACTCTTGTGATGCCGCACCGT
GTAGGGCAGGTACCTCGCTCGCCGTACCAGGTTTTTGCcagtaaatggtc
agtgttgaatATAATGCAAGATTTTGAATGAACTGTGTGACCAAGAAGGC
ATACTTGGGTTTAACAATAGCGTGTTAAGACCGTTTTCTcaggaataaaa
gaagaaaaaattgtcgaaaatttttcgcgctcgcttcgctcgcgttcttc
TTTTCCAAAAGTTTCCTTCTAGGAGAAGAAGGTCAAACTAGACGACCTTT
TCTTCCACCACCTCTTTGAAGCCTGAGACTTTCCAGTCCATGATTTTAGG
CCAAGCCTCGATTTAAAATTTATCCTTGATAAATACGGGTCTGCGACGAA
GAAAATCGGAGGGAAATCCTTAAAGCTAAGCCTTAACATTGCATTTGCCA
CCCTTAACAAGTAAATTCAGTCAGAGTCTATATCACTGTACGCCAGAGAG
GTAgttctttgtaactttggcgTGACAGACCTTAAGCATTTCCCTAAATG
TTCGACGCTATCGAGAATAACATCACAAAACTGCGGAAAactttattttg
atgaaaattgttggtataagaataggtcaaacagctttaaaagaggCCAT
AAAAGGTcatatttagcccaataagtttacaatcgtttaacaaaagaatt
aaaagcaaaattaccgcgtgaacgtgaaaatggtttttttcgcgcgtgaa
tacgtgaattggcaaaaatttgcacgtgaatacgtgaattgagggtcgac
tgggggggcctcatacagccatgcataatttttaaaatatgtatgataca
gtaattatgcatggctgtatcattgtttttatgctggagtacataattat
tcaacatggctgcctcttctttaaaaaacactttcgatttcagtgcTGTG
GACATGTTACAAGATGGCAAGAGGTTTTTGAacaggaatcttcaaaaaat
tgcaacttcaaaatggaataccTATCTGAAAAACTACTAAAGGTTGAAAG
ataagtgacccctcattttttttctgaggataAGGGCTTTTCATTTAAAC
TTGgtttaacattttgaaaatgattttgaaaccGACTGACCCCCCtacct
caaatgaatgacctggctggtcattaaaatacaaaattaaatcaagacaa
aaatggtagagtcaagctgcgagtggagctgcgtaccatcagtgtagacc
taaagctctaaaacaccatctaataacatgaaaaccagaatatgattctt
caatgggaatcaaaactataaagtgcacttacaaacatcaatttgtcaga
tctaacaaaattaataaccgcactgtcatcattgacaataaaacaaacga
ttttctgtcaagagccttgtaaacattccaacaacttccatcgaaatgat
ctgtcgTAACTCAGTAtaccattttagcgcggtccgaggattgagccgag
aactcttgcagagcgcccgagctcccgcgcggcgcgcaccgcggggatga
aaaacttcaaaacttcaaaaaactgatttttgtcctgcctttgcgggatt
ttggtcctagtgcttgagtgcagcatagggtacaaagtccaaacacgcgt
ttcccgtaatttttgtatgaagagttaggtctatactgaccataagttgg
tctagttccaacacccttctttagagacaggaataatatatatttatgaa
agcttgaatcactgattgaaaaaggattattcctctgggagcaataagca
aaaagctcgtcccaaaaaatctgaaaaatggcaaaaaatgaagttttcaa
aatgtcaaaaaattttatatagaCATAAAGAATATCATTTCATGAACAAT
ATGTGAAAAAATCAGAGCAGGAACATGCTCCATTGAAAAGTTATGACCAG
ATTTCCGATTTCCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNagggtgtcggaattagaggagggatgt
cgacattagaccaaattacggtagttcatttgttttgaaattttgctgct
ttgattggtcagtcatttgatggctacacatgttagcctccactgatgaa
AAATACCCGACATGGTAGTCTCTTTAGTCTTTTTCACAATTATTAACATA
CTTGTCttgctttttttgttttagtgttaaaaaatatgaaacatggcttg
gcagcaggttttaggtgccccctaagaattcaggtgacccctaagattta
ggtaacccctggtttccaaatattttaggtgacccctaagccaatgagac
gtcaaattttttcaaaaatccttttcaaacaatcaaacaaatacaacagt
tagtttagcttattgctaaatagaataaatgtcCTGTTtacatctaaagt
gaagatgtGCTAttgcaaaaatctttaaaaaacaataTATGAAGACGTGC
TATTGCACAATTTTTTAGGAATAGCTCAGCGCACACACAGTTTTCTCAGA
AACACTCTTTTTTAGATGGAAGACATTCCATAGTGAAGTTTatgatgaaa
gaaaaacaagttcagaaaaaaatcaccaaacatagaatctcgcccccagg
tccatctgaaaaatttaggtgacccctaacatggttagtccccccaTAGC
CACAGGCTAAAATTAGGTACCAATTGCTGCTCGACCTTTTAGCCACCCCC
TCacgccaggggggggggggttccagccattttaaatcaagataaaataa
agatgatagCTTTAAAGGACTTATCTCCATAAAATTTGGTGTGTGTtgta
aaataatgaataatgacaACTTGGCCCGCATTGAATTTGGAAAGTCGATC
TTACGGTAAAGTTGAAATCCAATTCCATTGGCCTTATGATAAGCACtaaa
aagtgcttggaattttgcctgatAAATGAGCATTGAACAGTATAGAATTA
AACTTGTATATCACGATTACAGgtcgattttactttcgttttgactttga
gtggtttcatttttgatttcaagccaacatcttagcaacagggtgctcgc
ccatagttacaggggtttgtgcaaaaaactaaacatagaaaattttccaa
atcccccatttcgattaatgcaatgaaaaatgaaacttttctatgtttca
ctattttgcacctattcttcaaaatgaaaatatttaagatttaaaagttc
ttcatttattcaatgattttttacagcactttgttgacaatctaactctc
acaTCGAACTCCCGCTTTCTTTAGTAAATTGAGGATGAGAAAAAAACCCA
AGCCATGGATCATGGatcaaaacaaatatatgaagggtgggattttacag
tcGCCCgttgtgcaaggcactgagagacCACGGGTACCAAAAAGAAGGGT
CCTTTGAAAtgtggcaacctcattggtggaaatttgataaacagctgcaa
atgagcgctgggaagcaatacGAAGCAATCAGttgaagagaccactttcg
tttttgttgcggatttcgatataaacttctctcagggattacttgtcaat
gtacatgtacacatgtgttgtgtcaacttgtcagcattgtattgttgtaa
agggaaagataaaagaggtaagactagcctagtttctaatcctgatatag
gagtttaagcttagactgtTGAATGTGAATAGTTAGACCCTTTTTTTTTT
GTGAGATGCAATGTCATGTTGGATAATTAAAAACTCAAGCActaataaaa
acaatgatgagATAAAAATTACTATGATAATTATGCATAAAAGTGTTATT
ATTTTGGTGCTGGACAGGTTTCTCTCCATTTTTGATTGCCATTGGACGGT
TCTAGTTATAGTCtgttaccccccccccctgtggaCGACATATGGATTTT
CCGTAACAATTTACGTAAGAATTTCCGTATAACATTCAATTTCCAATACA
TATGACTAAATAATGAGGAAAAATTCTGGATTTtccaaaacatttttcaa
atttctcaggatttccaagtgaaaaaaaaacaacaaaaaacccTGTCATC
cacagggggggggggaaatgatttttttctggaactgcccatTGATGATA
CTGCATTCGGGCATAGATTTCGATAAATTTTCCGGAGGCTCCTGCGGATT
ATCGCAAAACCCTCGTTTCACTCAAGCATGTATGAAATATCTTTCTAATT
ATCCGCCACCGCCGGCGGAGTTTGCGAAGATCCTGCGGAACTTCGCATTC
TCCACTTTTCACTCAAGCATGTATGAAATATCTTTCTAACTATCCGCCGC
CGCCGGCGAAGTTTGCAAAGATCCTGCGGAACTTCACATTCTCGGCGTTT
CACTCAAGCACGTATGAAATATCTTGACGTTTCTACATTGTAATgccttc
tttttttatttgtgacgtcaattttttgaaCTTGTAGATAGTATGAAATA
CCTTTCTAACTATCCGCCGCCGCCGGCGGAGTTTGCGAATATCCTGCGGA
ACTTCGCATTTTCCGCGTTTCACTCAAGCACGTATGAAATATCTTGACGT
TTCTACATTGTAACgccttctttttttatttgtggCGTCAATTTTTTGAA
CCTGTAGTCGTTTGACCAGCGCAACGACTTCGATAACAAGATGTTCAGTT
TCAGGTTGTAGCAATGAATATTGGTTTAGATGCTTTGCAAGTATTCCGTA
TTCTTTTCAAGGCAATACCGCTAAAAACTCCAAATCGAACCGAGATCATC
AAATCACATGCTGCTACATTGCTTGAGAATAATGGTTGGCAGAAAGATGG
CGATCAAATTATTACCATACACGACGTTGAAAGTTATCAAGAAAACATAT
TTAATTTCACAATTAATGATATACTCCTATTAGAGCACAATCTAAGAAAA
ACTAAGTTATCGTTACAACTGAATGACGTCCCATTGATATTGTTGCCGac
ggaaaacttttgttgtggaTCCTTGTTACACCTGAAATCCTATTTCGCAA
GTGTCACTGTGTATGATATCAACCAAGTGACCATCGCAAAGTCATATCAT
TCacaatgcaaaaaatgtaaaaggacGTTTTCGTATGGATTTATTGATGA
AAAAAGTGGTATGTTACTTAGTACATTTTCCTCCCGATATTAATTTGTTA
TTATATCATTAACTCATGGCAAACCAATCCTTTACAATTACCCATTATTA
TTTggattaaaattttctcagctaatcaaaaaaattatgttttggtaACA
GGATCAACAGCATGAGAGGTTAAGATAAACTTTTTTTCTCGTTTAGGTAT
GCAGAAACTCAATGTTGNGGTAACAGGATTAACAGCATGAGAGGTTAAGA
TAAACTTTTTTTCTCGTTTAGGTATGCGGAAACTCAATGTTGATCGAGAT
TACATCATGTTTAACAACGTTACAGCATACCGTAAACGATTGATGAAATA
TATCGATAATATGATAAAAATAGGAGCTGTCTCGTTTGAGAAGCTGAGTG
AAATGTTGGAGGGCAACTGGGAAAGTAATAAAATCAATCCTGATAGAATA
GAAGAGGCATGGTTTATTTACCGAATTTTAGAATTTATGAATGTTTTTCC
GGAATGGCCACGTCATACTTCAAGCAAAGCATTAGATTTGGAATCATTAT
GTCATTTCAATTTTCCagaaataaaaagaatgattGATAGTCTATGGATA
AATCACATCTGTTCCGAAGTTGGTTGTNAtgccattttttatccattcac
accatccacatcacattttatataataaatatttttcgtgcttttgtctt
gttaggcatcatattttatgattttgtcattatttttgtaagtaagtgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022503-exon-sc0000424-1491911889:109873..109913 | TCONS_00022503-exon-sc0000424-1491911889:109873..109913 | Clytia hemisphaerica | exon |
| TCONS_00022503-exon-sc0000424-1510915933:109873..109913 | TCONS_00022503-exon-sc0000424-1510915933:109873..109913 | Clytia hemisphaerica | exon |
| TCONS_00022503-exon-sc0000424-1575043694:109873..109913 | TCONS_00022503-exon-sc0000424-1575043694:109873..109913 | Clytia hemisphaerica | exon |
| TCONS_00022503-exon-sc0000424-1491911889:118194..118671 | TCONS_00022503-exon-sc0000424-1491911889:118194..118671 | Clytia hemisphaerica | exon |
| TCONS_00022503-exon-sc0000424-1510915933:118194..118671 | TCONS_00022503-exon-sc0000424-1510915933:118194..118671 | Clytia hemisphaerica | exon |
| TCONS_00022503-exon-sc0000424-1575043694:118194..118671 | TCONS_00022503-exon-sc0000424-1575043694:118194..118671 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000424 | supercontig | sc0000424:109873..118671 + |
Blast
The following BLAST results are available for this feature:
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