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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022499 ID=TCONS_00022499|Name=TCONS_00022499|organism=Clytia hemisphaerica|type=transcript|length=1368bp
AGTTTTATAACGCGAACTCATGCTCTCAattggcttttccagaaaaaaac
cgtacaccACCTGTTGAGGtgctccaaccttttgtgaactacccccttgg
aattccaggcaagtttaggatcatacccctctggaattccgaatttttac
agattttcaatcattacccccatggaattccacttatttttgacggattt
ttgtctactgctatggaattccactgcatttcaaaccataccccgcttgg
aatggaaatggactcctcaacagggggtgtacggtttttttctgaaaaaa
gccCAATTTTACTTTCACAGTCTGGAGGATCGGAGAAACTTTctaaaaag
aaagcaaaagcCAACGCGTCCAAGATGATGAAACAAACAGGCGTTACcaa
gcaacaacaacaaaacaaagttaaaaaacACAACCTCGTCGCCATGGATA
TTTTGCACCAAGAAGAGGCCGAGATACCTTCGGGAACCAAAAATGCTGAC
ATTGGCaataatgaaaatgaagatgaagaagaagacaaagaagaaaaaca
agatCAAaatGAAAATATATTGGACACATTAACAGGACAACCGATAGGGG
ATGATTTGTTATTGTACGCCGTACCCGTGTGTGCACCCTACAGTTGTATG
CAACCTTACAAGTACAAAGTGAAAGTGACACCAGGCACCGGAAAACGTGG
ACGTGCGGCTAAATCAGCTATCCATATGTTTCTTCAGGCTAAAGAAGCCA
CTGACTGGGAAAAAGATTTACTCAAAAGTTTAAAGGATGTGGACATATCA
AGAAATATACCAGGAAAAGTCAAAATTTCTGCACCCAATATGCAAAGGAT
CAAGAAGAAATAACAATCTGAGGTTTCAACTCTTGAGGTTAAGCTTTGAT
ATAAAGCACTGGTGGAGGATATTTGCTCGTAAGCAACCTTGCCTCTGGGT
CCTGCTTTGGTGGAAGGAAGGAATGAACTGTGCGTTGGATCATGATGGAA
AAAGACTTTGTCCTGCGAACGATTTGGTATTATTCGACACGATAGATGGT
GATCAATTAAATTGACTGTTTTTGGCTGGGATGGATTGATAAGAATGGTT
GGCTCTGATATCCTCTACGAAAACATGACAATGGTATTCCTTTTCCAAAG
AAACATGATGATGATTATGTCTGATTATTGATTGGTAATTACGcattgac
atttttttggtcGGCATGGTTTCGTGATCTCGTTCAGTTACAAAACTGTC
AATACTCtacaaatttcatgctttattggctTTTAATGGCTTTTTTCACT
GGCTGGGTtggtactctcgggtgcctaataaacagGATTCGGAAAAAAGG
GGGGCTAATTATCGGGGG Run BLAST on NCBI transcript from alignment at sc0000424:67035..70234+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022499 ID=TCONS_00022499|Name=TCONS_00022499|organism=Clytia hemisphaerica|type=transcript|length=3200bp|location=Sequence derived from alignment at sc0000424:67035..70234+ (Clytia hemisphaerica)
AGTTTTATAACGCGAACTCATGCTCTCAattggcttttccagaaaaaaac
cgtacaccACCTGTTGAGGtgctccaaccttttgtgaactacccccttgg
aattccaggcaagtttaggatcatacccctctggaattccgaatttttac
agattttcaatcattacccccatggaattccacttatttttgacggattt
ttgtctactgctatggaattccactgcatttcaaaccataccccgcttgg
aatggaaatggactcctcaacagggggtgtacggtttttttctgaaaaaa
gccCAATTTTACTTTCACAGTCTGGAGGATCGGAGAAACTTTctaaaaag
aaagcaaaagcCAACGCGTCCAAGATGATGAAACAAACAGGCGTTACcaa
gcaacaacaacaaaacaaagttaaaaaacACAACCTCGTCGCCATGGATA
TTTTGCACCAAGAAGAGGCCGAGATACCTTCGGGAACCAAAAATGCTGAC
ATTGGCaataatgaaaatgaagatgaagaagaagacaaagaagaaaaaca
agatCAAGTAAGTTTTATCAGCCAAGCAATTATCGGTGGAATCAACCTTC
ACAAAGACTACCTGACCAGGCTAATGTGTATTATCGGGCCCAATCAATAA
TCTCATCTCTACAAAAAATGTTAATTGTTAACCTATGTTTTTCTCCGATA
AAATGACTACAGGGCTAAATTTGCATCACTTCATTCGTTCAACTTTTCTC
CTTCTTTAACATATATGCCCATTCATAACCATTtcaataagaacaaacta
tataagaacataaggcttcgattgccaaagtcataagaacaagttaagga
tgttcttataaaaacgtgtatgtcttgaatttgtaatttttatcaCAGCC
TTGGTCATGTGATGATTTTGCACGATCCATTTGGGATTTTATCGAGATAc
gatattcttttatatttttttagaatGAAAATATATTGGACACATTAACA
GGACAACCGATAGGGGATGATTTGTTATTGTACGCCGTACCCGTGTGTGC
ACCCTACAGTTGTATGCAACCTTACAAGTGAGTGCATGAATTTGAACAAT
AGCTAGGTCattgtcattataaaaaacgccagtcttgggattggtctatt
ttctaatcacatgatcaaaaagtttgaaaaatcaatcgATTTTGGTgcgt
actctcgggtacttaatagccgtcccccccccgctaattaatttttcgaa
aattttccacccaggacattcttattccaacccccccgcttattaaNACC
TTACAAGTGAGTGCATGAATTTGAACAATAGCTAGGTCATTGTCATTATA
GAAAACGCcagtctggcaatgtattgttttatctttttgttcaattttct
tttgttacaaaaaaaagacaagttgcgatttgtatactttttgatcacgt
taccgaAATCttctcttgggattggtctattttctaatcacatgatcaaa
aagtttgaaaaataaatcgattttggtgcGTAAGCTCCaactttaacaat
aaaaagaaacaaaagacttccagaccagtgtttttataatgactatggtt
agTTTAAGCATTAGGATGTTCACGACGTACCCCACCGGGCTGTTTATTGT
AGTCCCGGAATCGCTTTTAGTTTTTACCAAAGACAAATTCATCTTAAGTT
TGGGAAAGTTCGTTTCAACACTTATTATCTTTCCATCATTTCAACTTTCT
TCTTTGTCATTGTTTTTGTATCCTTGTACGACTCTACTCTTCTATATGAT
GCACACGTTTGTTATAAACGCTGCACTCCTCATTTATCGATTATAGGTAC
AAAGTGAAAGTGACACCAGGCACCGGAAAACGTGGACGTGCGGCTAAATC
AGCTATCCATATGTTTCTTCAGGCTAAAGAAGCCACTGACTGGGAAAAAG
ATTTACTCAAAAGTTTAAAGGTAATTCAAATCTTTAATTAAATATACCTT
TTGTAGGGCATGATGGGTTCATGTTGaatataattaaaaactctaCTGAT
TCCAGCACCAAAACAATGATAATATTTAGTACATGTATTTACAAAATATG
CTTTCTTGTGTTACTGCAAGAAGTGGGaaagttaaatttttgaaaaatat
ttccccCAACATCTGGAATGTAGAAAgaacttcagaaaaaaaaaacacaa
atacaAGTGCTTGTAATCTGAACTAGCTTTGTTTAACAATCTAATTTGTT
ATTGTTCATAATTCACATTCTTTACTACTACACATTTTACAGTACTAGGT
TCCTGGCAAAAAAGTGTCTAGTAGAATAAACTTTCTGTATTTTTGAGAAA
GTAACTTGCGTTTCCATATGAGAGCAAGGAACCAATCTGAAAGGGAGTGC
TCTTTTTTTCGGACCTACCTCCGAGACCCATTCTGTGTTCTGAAAAATGG
CCGAAACAATTCTTCCAACAATTATTCGCCTATTTTGCTTCTGTGCTGGA
CATTATttcttctctagttttattttTATCCGACTcttatcatcaggtag
gtccattcagcatgtggCTTAGttgttaaatttaattttgttcATAATTC
TTATTCTTGACATTCAGGATGTGGACATATCAAGAAATATACCAGGAAAA
GTCAAAATTTCTGCACCCAATATGCAAAGGATCAAGAAGAAATAACAATC
TGAGGTTTCAACTCTTGAGGTTAAGCTTTGATATAAAGCACTGGTGGAGG
ATATTTGCTCGTAAGCAACCTTGCCTCTGGGTCCTGCTTTGGTGGAAGGA
AGGAATGAACTGTGCGTTGGATCATGATGGAAAAAGACTTTGTCCTGCGA
ACGATTTGGTATTATTCGACACGATAGATGGTGATCAATTAAATTGACTG
TTTTTGGCTGGGATGGATTGATAAGAATGGTTGGCTCTGATATCCTCTAC
GAAAACATGACAATGGTATTCCTTTTCCAAAGAAACATGATGATGATTAT
GTCTGATTATTGATTGGTAATTACGcattgacatttttttggtcGGCATG
GTTTCGTGATCTCGTTCAGTTACAAAACTGTCAATACTCtacaaatttca
tgctttattggctTTTAATGGCTTTTTTCACTGGCTGGGTtggtactctc
gggtgcctaataaacagGATTCGGAAAAAAGGGGGGCTAATTATCGGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022499-exon-sc0000424-1491911889:67035..67591 | TCONS_00022499-exon-sc0000424-1491911889:67035..67591 | Clytia hemisphaerica | exon |
| TCONS_00022499-exon-sc0000424-1510915933:67035..67591 | TCONS_00022499-exon-sc0000424-1510915933:67035..67591 | Clytia hemisphaerica | exon |
| TCONS_00022499-exon-sc0000424-1575043694:67035..67591 | TCONS_00022499-exon-sc0000424-1575043694:67035..67591 | Clytia hemisphaerica | exon |
| TCONS_00022499-exon-sc0000424-1491911889:68008..68111 | TCONS_00022499-exon-sc0000424-1491911889:68008..68111 | Clytia hemisphaerica | exon |
| TCONS_00022499-exon-sc0000424-1510915933:68008..68111 | TCONS_00022499-exon-sc0000424-1510915933:68008..68111 | Clytia hemisphaerica | exon |
| TCONS_00022499-exon-sc0000424-1575043694:68008..68111 | TCONS_00022499-exon-sc0000424-1575043694:68008..68111 | Clytia hemisphaerica | exon |
| TCONS_00022499-exon-sc0000424-1491911889:68881..69004 | TCONS_00022499-exon-sc0000424-1491911889:68881..69004 | Clytia hemisphaerica | exon |
| TCONS_00022499-exon-sc0000424-1510915933:68881..69004 | TCONS_00022499-exon-sc0000424-1510915933:68881..69004 | Clytia hemisphaerica | exon |
| TCONS_00022499-exon-sc0000424-1575043694:68881..69004 | TCONS_00022499-exon-sc0000424-1575043694:68881..69004 | Clytia hemisphaerica | exon |
| TCONS_00022499-exon-sc0000424-1491911889:69652..70234 | TCONS_00022499-exon-sc0000424-1491911889:69652..70234 | Clytia hemisphaerica | exon |
| TCONS_00022499-exon-sc0000424-1510915933:69652..70234 | TCONS_00022499-exon-sc0000424-1510915933:69652..70234 | Clytia hemisphaerica | exon |
| TCONS_00022499-exon-sc0000424-1575043694:69652..70234 | TCONS_00022499-exon-sc0000424-1575043694:69652..70234 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000424 | supercontig | sc0000424:67035..70234 + |
Blast
BLAST of TCONS_00022499 vs. Swiss-Prot (Human)
Match: NEMF (Nuclear export mediator factor NEMF OS=Homo sapiens GN=NEMF PE=1 SV=4) HSP 1 Score: 135.961 bits (341), Expect = 9.798e-34 Identity = 59/98 (60.20%), Postives = 82/98 (83.67%), Query Frame = 3
Query: 567 ILDTLTGQPIGDDLLLYAVPVCAPYSCMQPYKYKVKVTPGTGKRGRAAKSAIHMFLQAKEATDWEKDLLKSLKDVDISRNIPGKVKISAPNMQRIKKK 860
+ D+LTGQP +D+LL+A+P+CAPY+ M YKYKVK+TPG K+G+AAK+A++ F+ +KEAT EKDL +S+KD D+SRNIPGKVK+SAPN+ +K+K
Sbjct: 979 LFDSLTGQPHPEDVLLFAIPICAPYTTMTNYKYKVKLTPGVQKKGKAAKTALNSFMHSKEATAREKDLFRSVKDTDLSRNIPGKVKVSAPNLLNVKRK 1076
The following BLAST results are available for this feature:
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