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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022494 ID=TCONS_00022494|Name=TCONS_00022494|organism=Clytia hemisphaerica|type=transcript|length=2801bp
aTTAAGATGTTCTCATTGTAGTCTTATGtcatttaatctttcttctcgAA
AATATTGTCTAGTATTTTGATGCGGGTAGGCAAGAATCCGGAAAGCTTTT
TGTCCATACAGCATGATAAAGATAACCAAGTTGTTTACGATGAGGGTTAA
TTGTTGATATAGCTCTTTCTCAACTGGCTTTTGAAATGACACAATAACAA
ACATTACAATAAACATTAGAAGCGTGGTGAACGAAGTGTATACAAAAGAC
ATTGCGTCGTTCATGACATTTGGTAAATGTCTACCTCTGAATGCTTGAAT
GAAACAGGCAAATTGTATCAGCATTACAAATCCAATCATAATATTTAAGT
GAAAAGCTGTACTGCAGTATCTGACTCTTTGAAACTGGGATTCGATAATT
AATACTGATATTGTTGTCTCAAGTTTTAGAGTTATGTAATTTATGGCAGT
GCATATGATAAGGCAAACCAAAATGACCAATATTTGCCAGGAAACTGTTT
TTCGTACCTCATTTTCTGTCACTTGGACTGCACTAAGAAAAGCTTTCAAC
AGTTTTTGTGATTTGACAAAACCTATCGTAACTATGAAAACAAAAACAGT
GCTTGTTATAATGGTTTTCCCCACACAGACTTCCATGGATGGGTGCAGTA
TTTCGATGACTGGAGAGAATATGAAAATGACCAGGATTGCAAACAGATGT
AATATTGACATTTTAGAATCTGCTGTTGCCACCACAGGAGTTTCTCGCTT
CTTTATAAATAAAACCAGTGTTGCCATAGTTGAAAAGCCTCCAAAGCAAG
ATGCACTTAAAGAGATTTTGAAAAGTGTTCTTTCTATTGGTGTTTGGTAA
ACATCTATGTATGGATCGATACATGCTGTACGATCACCATTATCGATGCT
GAATCTGCCATGACATGGTATGCATCCATTATCGCCAATAGTTGATTTGT
GATAATTGACAGGGCATAAATCACATCTCCATCCATAACCGCCTGCTATT
TCACGGTATACTTTATGTTTTCCTGGTACGCAGATTTCTTGTGGGCACTT
TGTTGGACTTGATATGTTATTTGTGTTTGAGAGTAATAAATCAGATAGAT
TTCTAACCAAATGTCTATTAAACATATCTATAGCACAAGAGCTGTATAAG
CAGgtcatattttttatatttgttatGCTGAACATGGGCTTATGGTAGCC
TTTTGAATCAGGCTGGACAGTCTCAAGGACTGTATTGATGTCTGTTAGCT
GTGTTTTAAGGTCGTCTTTGAACAAAGGAGCGTATGTGATATATTGGTTG
ACCAAAATAGAGTTACTATAGATgatgttgaattcatttttcaaatattc
tcTCCACTTTTTCACTATATCTTTCGATTCACTTGATATTTTGTAATCTT
TTCGGCTCGATGATGCTATTTTAAACCTGTGGCTATCTAACAGACTGAAA
AAGGTTTCCGGAAGCTTTTCTTTTTCGGCAAAGGTATATCCAAATGGGGA
ATCATGAGTCAAAATGGGCATCCCAATTTCACCATGTATATCCTTCAGTC
GCGAAAGCATCTTCAATGTTTCCATTCTTCTACCAAAAAGTATGATGGCA
GGTTTCTCGTGTTCCTTTAGCCAGGGTTTTCCAAAATCGTTTTCCTCAAC
TGCCAAAGAAGTTAGTTTATGAAGTTGCAGGCATTTCTTTGCTTTCCGAA
ATTCAGATATACTTAAATTATAATANAATCGTTTTCCTCAACTGCCAAAG
AAGTTAGTTTATGAAGTTGCAGGCATTTCTTTGCTTTCCGAAATTCAGAT
ATACTTAAATTATAATAAACCTGATAGGGAAAAGCATCATCTTCTTGAGA
TAAAGACACCAAAAACAGGTCTCGCCAATCAAATTTGTTCACAACAGCCA
AGAGATCTTGTATGTAACTTATCATTCTAGAAGATTCTGTTCTACCATCT
GAAAGCTCTGTCACCTCAAAGTAATGGACATTGATATTGGTGAAGGATAG
GACATTGATGAAATGAAGGCTCATCCTTTCAGGTAGATGTGTGAAAACGA
AAGCAACAAGTGATTGGTTGAAAGCTTGGCCAGGGAATGGGGTACTATAT
TGTACGCCAAGTAGAATTTCTATTGCAACGTAAGTTAGATGGTTTAGATC
TTCACACACATCTACAGTTCTGTATTCAATTTTATTAGCTTTCTCTGCCA
AAGTTGACGAGAGTGTAATTTTTGAAGATTGAACAACATCGGCCAGTACG
CGCCTATATTGTTCGGCCTCTTGGTGCCACAATGTTTTATTTGTTGTTTG
ATTGGCGCAGATTGAAAATACACCAATATTGTAGAATGTGATCGATGATG
AAACCTCTATCACCAACATCATCACCATCACAAACAAACCCATCTTATAT
CCTAGAGGTACTGGATTTCCTGAATATACTAATGATGGATTACTGTAGCT
ATGCTTTTATAGCCTGTGAATACAGATTATAATgttacaatagacctttt
cataaattacgtcacaaacaccacttgcctcgtattcaaacaatttgcAT
GGTGATCATATCATTTGagacatttttttatgaatagaaagtagttgtaa
taaaatctgctgggaaTTAATCaatatggcaaaaatttcaaaacgaggca
aatgatgttcgtgacgtaatttataaaaaggtctattccacgTGATCATT
CTAGATTAAAAACACTTTCTAAAAATAACACAATACTGTAGCCATTATAA
TTTCCCCTCGTTTGAATGTTTAAATTTAAAACTGATAAGAGATCACTATC
A Run BLAST on NCBI protein sequence of TCONS_00022494-protein >TCONS_00022494-protein ID=TCONS_00022494-protein|Name=TCONS_00022494-protein|organism=Clytia hemisphaerica|type=polypeptide|length=520bp
METLKMLSRLKDIHGEIGMPILTHDSPFGYTFAEKEKLPETFFSLLDSHR
FKIASSSRKDYKISSESKDIVKKWREYLKNEFNIIYSNSILVNQYITYAP
LFKDDLKTQLTDINTVLETVQPDSKGYHKPMFSITNIKNMTCLYSSCAID
MFNRHLVRNLSDLLLSNTNNISSPTKCPQEICVPGKHKVYREIAGGYGWR
CDLCPVNYHKSTIGDNGCIPCHGRFSIDNGDRTACIDPYIDVYQTPIERT
LFKISLSASCFGGFSTMATLVLFIKKRETPVVATADSKMSILHLFAILVI
FIFSPVIEILHPSMEVCVGKTIITSTVFVFIVTIGFVKSQKLLKAFLSAV
QVTENEVRKTVSWQILVILVCLIICTAINYITLKLETTISVLIIESQFQR
VRYCSTAFHLNIMIGFVMLIQFACFIQAFRGRHLPNVMNDAMSFVYTSFT
TLLMFIVMFVIVSFQKPVEKELYQQLTLIVNNLVIFIMLYGQKAFRILAY
PHQNTRQYFREERLNDIRLQ Run BLAST on NCBI transcript from alignment at sc0000421:247354..250154 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022494 ID=TCONS_00022494|Name=TCONS_00022494|organism=Clytia hemisphaerica|type=transcript|length=2801bp|location=Sequence derived from alignment at sc0000421:247354..250154 (Clytia hemisphaerica)
TGATAGTGATCTCTTATCAGTTTTAAATTTAAACATTCAAACGAGGGGAA
ATTATAATGGCTACAGTATTGTGTTATTTTTAGAAAGTGTTTTTAATCTA
GAATGATCAcgtggaatagacctttttataaattacgtcacgaacatcat
ttgcctcgttttgaaatttttgccatattGATTAAttcccagcagatttt
attacaactactttctattcataaaaaaatgtctCAAATGATATGATCAC
CATgcaaattgtttgaatacgaggcaagtggtgtttgtgacgtaatttat
gaaaaggtctattgtaacATTATAATCTGTATTCACAGGCTATAAAAGCA
TAGCTACAGTAATCCATCATTAGTATATTCAGGAAATCCAGTACCTCTAG
GATATAAGATGGGTTTGTTTGTGATGGTGATGATGTTGGTGATAGAGGTT
TCATCATCGATCACATTCTACAATATTGGTGTATTTTCAATCTGCGCCAA
TCAAACAACAAATAAAACATTGTGGCACCAAGAGGCCGAACAATATAGGC
GCGTACTGGCCGATGTTGTTCAATCTTCAAAAATTACACTCTCGTCAACT
TTGGCAGAGAAAGCTAATAAAATTGAATACAGAACTGTAGATGTGTGTGA
AGATCTAAACCATCTAACTTACGTTGCAATAGAAATTCTACTTGGCGTAC
AATATAGTACCCCATTCCCTGGCCAAGCTTTCAACCAATCACTTGTTGCT
TTCGTTTTCACACATCTACCTGAAAGGATGAGCCTTCATTTCATCAATGT
CCTATCCTTCACCAATATCAATGTCCATTACTTTGAGGTGACAGAGCTTT
CAGATGGTAGAACAGAATCTTCTAGAATGATAAGTTACATACAAGATCTC
TTGGCTGTTGTGAACAAATTTGATTGGCGAGACCTGTTTTTGGTGTCTTT
ATCTCAAGAAGATGATGCTTTTCCCTATCAGGTTTATTATAATTTAAGTA
TATCTGAATTTCGGAAAGCAAAGAAATGCCTGCAACTTCATAAACTAACT
TCTTTGGCAGTTGAGGAAAACGATTNTATTATAATTTAAGTATATCTGAA
TTTCGGAAAGCAAAGAAATGCCTGCAACTTCATAAACTAACTTCTTTGGC
AGTTGAGGAAAACGATTTTGGAAAACCCTGGCTAAAGGAACACGAGAAAC
CTGCCATCATACTTTTTGGTAGAAGAATGGAAACATTGAAGATGCTTTCG
CGACTGAAGGATATACATGGTGAAATTGGGATGCCCATTTTGACTCATGA
TTCCCCATTTGGATATACCTTTGCCGAAAAAGAAAAGCTTCCGGAAACCT
TTTTCAGTCTGTTAGATAGCCACAGGTTTAAAATAGCATCATCGAGCCGA
AAAGATTACAAAATATCAAGTGAATCGAAAGATATAGTGAAAAAGTGGAg
agaatatttgaaaaatgaattcaacatcATCTATAGTAACTCTATTTTGG
TCAACCAATATATCACATACGCTCCTTTGTTCAAAGACGACCTTAAAACA
CAGCTAACAGACATCAATACAGTCCTTGAGACTGTCCAGCCTGATTCAAA
AGGCTACCATAAGCCCATGTTCAGCataacaaatataaaaaatatgacCT
GCTTATACAGCTCTTGTGCTATAGATATGTTTAATAGACATTTGGTTAGA
AATCTATCTGATTTATTACTCTCAAACACAAATAACATATCAAGTCCAAC
AAAGTGCCCACAAGAAATCTGCGTACCAGGAAAACATAAAGTATACCGTG
AAATAGCAGGCGGTTATGGATGGAGATGTGATTTATGCCCTGTCAATTAT
CACAAATCAACTATTGGCGATAATGGATGCATACCATGTCATGGCAGATT
CAGCATCGATAATGGTGATCGTACAGCATGTATCGATCCATACATAGATG
TTTACCAAACACCAATAGAAAGAACACTTTTCAAAATCTCTTTAAGTGCA
TCTTGCTTTGGAGGCTTTTCAACTATGGCAACACTGGTTTTATTTATAAA
GAAGCGAGAAACTCCTGTGGTGGCAACAGCAGATTCTAAAATGTCAATAT
TACATCTGTTTGCAATCCTGGTCATTTTCATATTCTCTCCAGTCATCGAA
ATACTGCACCCATCCATGGAAGTCTGTGTGGGGAAAACCATTATAACAAG
CACTGTTTTTGTTTTCATAGTTACGATAGGTTTTGTCAAATCACAAAAAC
TGTTGAAAGCTTTTCTTAGTGCAGTCCAAGTGACAGAAAATGAGGTACGA
AAAACAGTTTCCTGGCAAATATTGGTCATTTTGGTTTGCCTTATCATATG
CACTGCCATAAATTACATAACTCTAAAACTTGAGACAACAATATCAGTAT
TAATTATCGAATCCCAGTTTCAAAGAGTCAGATACTGCAGTACAGCTTTT
CACTTAAATATTATGATTGGATTTGTAATGCTGATACAATTTGCCTGTTT
CATTCAAGCATTCAGAGGTAGACATTTACCAAATGTCATGAACGACGCAA
TGTCTTTTGTATACACTTCGTTCACCACGCTTCTAATGTTTATTGTAATG
TTTGTTATTGTGTCATTTCAAAAGCCAGTTGAGAAAGAGCTATATCAACA
ATTAACCCTCATCGTAAACAACTTGGTTATCTTTATCATGCTGTATGGAC
AAAAAGCTTTCCGGATTCTTGCCTACCCGCATCAAAATACTAGACAATAT
TTTcgagaagaaagattaaatgaCATAAGACTACAATGAGAACATCTTAA
t Coding sequence (CDS) from alignment at sc0000421:247354..250154 >TCONS_00022494 ID=TCONS_00022494|Name=TCONS_00022494|organism=Clytia hemisphaerica|type=CDS|length=1563bp|location=Sequence derived from alignment at sc0000421:247354..250154 (Clytia hemisphaerica)
ATGGAAACATTGAAGATGCTTTCGCGACTGAAGGATATACATGGTGAAAT
TGGGATGCCCATTTTGACTCATGATTCCCCATTTGGATATACCTTTGCCG
AAAAAGAAAAGCTTCCGGAAACCTTTTTCAGTCTGTTAGATAGCCACAGG
TTTAAAATAGCATCATCGAGCCGAAAAGATTACAAAATATCAAGTGAATC
GAAAGATATAGTGAAAAAGTGGAgagaatatttgaaaaatgaattcaaca
tcATCTATAGTAACTCTATTTTGGTCAACCAATATATCACATACGCTCCT
TTGTTCAAAGACGACCTTAAAACACAGCTAACAGACATCAATACAGTCCT
TGAGACTGTCCAGCCTGATTCAAAAGGCTACCATAAGCCCATGTTCAGCa
taacaaatataaaaaatatgacCTGCTTATACAGCTCTTGTGCTATAGAT
ATGTTTAATAGACATTTGGTTAGAAATCTATCTGATTTATTACTCTCAAA
CACAAATAACATATCAAGTCCAACAAAGTGCCCACAAGAAATCTGCGTAC
CAGGAAAACATAAAGTATACCGTGAAATAGCAGGCGGTTATGGATGGAGA
TGTGATTTATGCCCTGTCAATTATCACAAATCAACTATTGGCGATAATGG
ATGCATACCATGTCATGGCAGATTCAGCATCGATAATGGTGATCGTACAG
CATGTATCGATCCATACATAGATGTTTACCAAACACCAATAGAAAGAACA
CTTTTCAAAATCTCTTTAAGTGCATCTTGCTTTGGAGGCTTTTCAACTAT
GGCAACACTGGTTTTATTTATAAAGAAGCGAGAAACTCCTGTGGTGGCAA
CAGCAGATTCTAAAATGTCAATATTACATCTGTTTGCAATCCTGGTCATT
TTCATATTCTCTCCAGTCATCGAAATACTGCACCCATCCATGGAAGTCTG
TGTGGGGAAAACCATTATAACAAGCACTGTTTTTGTTTTCATAGTTACGA
TAGGTTTTGTCAAATCACAAAAACTGTTGAAAGCTTTTCTTAGTGCAGTC
CAAGTGACAGAAAATGAGGTACGAAAAACAGTTTCCTGGCAAATATTGGT
CATTTTGGTTTGCCTTATCATATGCACTGCCATAAATTACATAACTCTAA
AACTTGAGACAACAATATCAGTATTAATTATCGAATCCCAGTTTCAAAGA
GTCAGATACTGCAGTACAGCTTTTCACTTAAATATTATGATTGGATTTGT
AATGCTGATACAATTTGCCTGTTTCATTCAAGCATTCAGAGGTAGACATT
TACCAAATGTCATGAACGACGCAATGTCTTTTGTATACACTTCGTTCACC
ACGCTTCTAATGTTTATTGTAATGTTTGTTATTGTGTCATTTCAAAAGCC
AGTTGAGAAAGAGCTATATCAACAATTAACCCTCATCGTAAACAACTTGG
TTATCTTTATCATGCTGTATGGACAAAAAGCTTTCCGGATTCTTGCCTAC
CCGCATCAAAATACTAGACAATATTTTcgagaagaaagattaaatgaCAT
AAGACTACAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022494-exon-sc0000421-1491911889:247354..250154 | TCONS_00022494-exon-sc0000421-1491911889:247354..250154 | Clytia hemisphaerica | exon |
| TCONS_00022494-exon-sc0000421-1510915933:247354..250154 | TCONS_00022494-exon-sc0000421-1510915933:247354..250154 | Clytia hemisphaerica | exon |
| TCONS_00022494-exon-sc0000421-1575043694:247354..250154 | TCONS_00022494-exon-sc0000421-1575043694:247354..250154 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000421 | supercontig | sc0000421:247354..250154 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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