TCONS_00022480 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022480
Unique NameTCONS_00022480
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length946

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022480 ID=TCONS_00022480|Name=TCONS_00022480|organism=Clytia hemisphaerica|type=transcript|length=946bp
TTCAACATGACTACAGTTACTGTATGATTGAAATGTACTTTCTATGGAAA
TCTTtagaaagttttgttttgattaatttaCAGGGTCATGTATAAATAGG
AGAGGATGGAGCATATGGAGATCATCATCAAGGTTCAACCAACATTGTCA
AGGATAAGTCAAAAGAACACATAGCAAACTATCTTCTTTTACAGTTTAAG
ACAGGAAACCAACAATCTTCAACATGGTGCAAAGAACTCTGATTACAGCT
GCTTTAATTTTCATCACAGGTACCCTTGCTGGTGTTCCTCCACCACAAGT
CCTCACGGAGACTACAACAGAATTTGTGGACGTTCTTGGTTTGGATAAAG
CACCATGTGATGACTCAATGTGTAATGGTCGTGCTGATGGAAATTACGAA
TATTCCGGCAATTCTTCTTACTTTGTCACGTGTTCTGGTGGTCTTGCTCA
ATGTCAAGCATGTTGGCCATTGACTTTGGAATTCTCGGAACCATGCAACC
AATGTTTGTACAATAAGAATGATCGATGTGTTACAACACAAAAGTGGTCC
CCAGCCCCACAATTCGATTGTCCAGACATGTGTGGAAAAATGGGCCCAAG
TTTCGATGGCAATATGGCGGATCCTATTCAGCAACGCCATTATGTTGCTT
GTTGGCATGGTGTTACTGTTGGATGTATCATGTGTCCAAGTGATTTGATT
TACAACGAAGAATACAATGCTTGTCTTTACGAAGGAAAATATTTCACCCA
ACCAGACTTAGTTATTgaataaaatcgaaaaaataaatatttttatcgcc
tgtttttaataattttttactACTATTTTTTAAGATAACTACTTTAAAAC
gatacattttataatttttttatattctgcaattttataaaaatttgcaC
TATTAATTGCTTCACATTTATTTAAATTATATACACACAATATGAA
Run BLAST on NCBI

protein sequence of TCONS_00022480-protein

>TCONS_00022480-protein ID=TCONS_00022480-protein|Name=TCONS_00022480-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MVQRTLITAALIFITGTLAGVPPPQVLTETTTEFVDVLGLDKAPCDDSMC
NGRADGNYEYSGNSSYFVTCSGGLAQCQACWPLTLEFSEPCNQCLYNKND
RCVTTQKWSPAPQFDCPDMCGKMGPSFDGNMADPIQQRHYVACWHGVTVG
CIMCPSDLIYNEEYNACLYEGKYFTQPDLVIE
Run BLAST on NCBI

transcript from alignment at sc0000421:175702..180100-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022480 ID=TCONS_00022480|Name=TCONS_00022480|organism=Clytia hemisphaerica|type=transcript|length=4399bp|location=Sequence derived from alignment at sc0000421:175702..180100- (Clytia hemisphaerica)
TTCAACATGACTACAGTTACTGTATGATTGAAATGTACTTTCTATGGAAA
TCTTTAGAAAGTTTTGTTTTGATTAATTTACAGGGTCATGTATAAATAGG
AGAGGATGGAGCATATGGAGATCATCATCAAGGTTCAACCAACATTGTCA
AGGATAAGTCAAAAGAACACATAGCAAACTATCTTCTTTTACAGTTTAAG
ACAGGAAACCAACAATCTTCAACATGGTGCAAAGAACTCTGATTACAGCT
GCTTTAATTTTCATCACAGGTAATTTTCATCTGTCATTAGTAAAGTTTTA
CTTATCTTTGGGAAGGGTAATATTAGATACATTTCTTTGAGTCNNNNNNN
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ACTTTTTCACTAAAATTTGGTCTCTCTAAGGGTCAGTTTTCGGAGGTCCC
GTCCGCACATACCCCTCATTCACCAACCCTTGTACCCCCTCCCCCGGGCT
TTGAGTCTTTGAAAGTTCTGAGACTCTGAATAATTAACAATTTTACTGCC
CTCTTGTTCATTTTCCTCAACCTTTTAAATTTGGTATACCAATACCAAGC
CAAAATCTTCCAAGCTTGGTTTATTGACCTGGTCTTATACATTTCATGAA
CTCACACCGTAATGGAAGGCGGGAGAACTTGTGGCAAAAAACCTAAGACT
TCATGTAATTATTCAACACATCCATAAACACAAAACAAACGTCAATTTCA
ACGTTCATGTAACGCACCAGGACGTTATCGGGATGTTAGATGGAATTAAT
TTGTCTTTCGTAACAGTTCGAAATGAATGTCACAGCAAGTCTTCATTCTC
CACAATCTCGTATTCAGAGTCACTTTCACTTTTTTTTAGACTTAACTGAT
GGACGTACATGTATAACCTTTCGTGGACTAAGGGACTGAGTTCGAGCTTG
CTTTCTCCATTGATCAAAAGTTTTTTAATTTACAATTTTCAGGTACCCTT
GCTGGTGTTCCTCCACCACAAGTCCTCACGGAGACTACAACAGAATTTGT
GGACGTTCTTGGTTTGGATAAAGCACCATGTGATGACTCAATGTGTAATG
GTCGTGCTGATGGAAATTACGAATATTCCGGCAATTCTTCTTACTTTGTC
ACGTGTTCTGGTGGTCTTGCTCAATGTCAAGCATGTTGGCCATTGACTTT
GGAATTCTCGGAACCATGCAACCAATGTTTGTACAATAAGAATGGTAAGA
TAAACAACGAACAAACTTTCTCCAGGTAGCACACGCCATTGTTTTAACGT
TCATCTAACGTTATATGGAAGTTGTGAACAAGAGATAAACGTTGAAACGC
CCTTTTTAACAGACCCAGTATGATATTTTCAGCCAGCTGGAGTAAAAAAA
ACTTACCAAAACTTGATGGGGGATATTTCCATGTATTTTATAGCCAGGGA
TTTGTATTCCATCACTTTTAAGTCAGAAAATTCAGTGGGGATGGAAAAAA
ATAGCACAAGTTTACAGCGAGGATTTGGGTATTTGATTATTTTCAGCGGA
GACAAAAGTTAGTGTCTAATCTAATAAGTCCACTGGGGACGACATTTTGG
CCAATTTTTCTAGTGGAAAGGGGTCCCAGTGGGTCTGTGAGAAGAAGGTG
TACACTGTGAAGCATTTGATAACCCTGTTTTCGAGTCTTATGGTTGTTTC
GCTGGCAATAATTTAAAAAAGATAATTACAAGGAAAAGACACTCGTAATA
GAACAGTAAGAGAATTTAGGTACTGCAATTTTGACACATTTAGCCCGAAT
AACTGATGATTTCTAATCATCTAGATCGATGTGTTACAACACAAAAGTGG
TCCCCAGCCCCACAATTCGATTGTCCAGACATGTGTGGAAAAATGGGCCC
AAGTTTCGATGGCAATATGGCGGATCCTATTCAGCAACGCCATTATGTTG
CTTGTTGGCATGGTGTTACTGTTGGATGTATCATGTGTCCAAGTGATTTG
ATTTACAACGAAGAATACAATGCTTGTCTTTACGAAGGAAAATATTTCAC
CCAACCAGACTTAGTTATTGAATAAAATCGAAAAAATAAATATTTTTATC
GCCTGTTTTTAATAATTTTTTACTACTATTTTTTAAGATAACTACTTTAA
AACGATACATTTTATAATTTTTTTATATTCTGCAATTTTATAAAAATTTG
CACTATTAATTGCTTCACATTTATTTAAATTATATACACACAATATGAA

Coding sequence (CDS) from alignment at sc0000421:175702..180100-

>TCONS_00022480 ID=TCONS_00022480|Name=TCONS_00022480|organism=Clytia hemisphaerica|type=CDS|length=1647bp|location=Sequence derived from alignment at sc0000421:175702..180100- (Clytia hemisphaerica)
ATCGATGTGTTACAACACAAAAGTGGTCCCCAGCCCCACAATTCGATTGT
CCAGACATGTGTGGAAAAATGGGCCCAAGTTTCGATGGCAATATGGCGGA
TCCTATTCAGCAACGCCATTATGTTGCTTGTTGGCATGGTGTTACTGTTG
GATGTATCATGTGTCCAAGTGATTTGATTTACAACGAAGAATACAATGCT
TGTCTTTACGAAGGAAAATATTTCACCCAACCAGACTTAGTTATTGAATA
AGTACCCTTGCTGGTGTTCCTCCACCACAAGTCCTCACGGAGACTACAAC
AGAATTTGTGGACGTTCTTGGTTTGGATAAAGCACCATGTGATGACTCAA
TGTGTAATGGTCGTGCTGATGGAAATTACGAATATTCCGGCAATTCTTCT
TACTTTGTCACGTGTTCTGGTGGTCTTGCTCAATGTCAAGCATGTTGGCC
ATTGACTTTGGAATTCTCGGAACCATGCAACCAATGTTTGTACAATAAGA
ATGATGGTGCAAAGAACTCTGATTACAGCTGCTTTAATTTTCATCACAGA
TCGATGTGTTACAACACAAAAGTGGTCCCCAGCCCCACAATTCGATTGTC
CAGACATGTGTGGAAAAATGGGCCCAAGTTTCGATGGCAATATGGCGGAT
CCTATTCAGCAACGCCATTATGTTGCTTGTTGGCATGGTGTTACTGTTGG
ATGTATCATGTGTCCAAGTGATTTGATTTACAACGAAGAATACAATGCTT
GTCTTTACGAAGGAAAATATTTCACCCAACCAGACTTAGTTATTGAATAA
GTACCCTTGCTGGTGTTCCTCCACCACAAGTCCTCACGGAGACTACAACA
GAATTTGTGGACGTTCTTGGTTTGGATAAAGCACCATGTGATGACTCAAT
GTGTAATGGTCGTGCTGATGGAAATTACGAATATTCCGGCAATTCTTCTT
ACTTTGTCACGTGTTCTGGTGGTCTTGCTCAATGTCAAGCATGTTGGCCA
TTGACTTTGGAATTCTCGGAACCATGCAACCAATGTTTGTACAATAAGAA
TGATGGTGCAAAGAACTCTGATTACAGCTGCTTTAATTTTCATCACAGAT
CGATGTGTTACAACACAAAAGTGGTCCCCAGCCCCACAATTCGATTGTCC
AGACATGTGTGGAAAAATGGGCCCAAGTTTCGATGGCAATATGGCGGATC
CTATTCAGCAACGCCATTATGTTGCTTGTTGGCATGGTGTTACTGTTGGA
TGTATCATGTGTCCAAGTGATTTGATTTACAACGAAGAATACAATGCTTG
TCTTTACGAAGGAAAATATTTCACCCAACCAGACTTAGTTATTGAATAAG
TACCCTTGCTGGTGTTCCTCCACCACAAGTCCTCACGGAGACTACAACAG
AATTTGTGGACGTTCTTGGTTTGGATAAAGCACCATGTGATGACTCAATG
TGTAATGGTCGTGCTGATGGAAATTACGAATATTCCGGCAATTCTTCTTA
CTTTGTCACGTGTTCTGGTGGTCTTGCTCAATGTCAAGCATGTTGGCCAT
TGACTTTGGAATTCTCGGAACCATGCAACCAATGTTTGTACAATAAGAAT
GATGGTGCAAAGAACTCTGATTACAGCTGCTTTAATTTTCATCACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012604XLOC_012604Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022480-proteinTCONS_00022480-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022480-exon-sc0000421-1575043694:179832..180100TCONS_00022480-exon-sc0000421-1575043694:179832..180100Clytia hemisphaericaexon
TCONS_00022480-exon-sc0000421-1575043694:176707..176958TCONS_00022480-exon-sc0000421-1575043694:176707..176958Clytia hemisphaericaexon
TCONS_00022480-exon-sc0000421-1575043694:175702..176126TCONS_00022480-exon-sc0000421-1575043694:175702..176126Clytia hemisphaericaexon
TCONS_00022480-exon-sc0000421-1510915933:179832..180100TCONS_00022480-exon-sc0000421-1510915933:179832..180100Clytia hemisphaericaexon
TCONS_00022480-exon-sc0000421-1510915933:176707..176958TCONS_00022480-exon-sc0000421-1510915933:176707..176958Clytia hemisphaericaexon
TCONS_00022480-exon-sc0000421-1510915933:175702..176126TCONS_00022480-exon-sc0000421-1510915933:175702..176126Clytia hemisphaericaexon
TCONS_00022480-exon-sc0000421-1491911889:179832..180100TCONS_00022480-exon-sc0000421-1491911889:179832..180100Clytia hemisphaericaexon
TCONS_00022480-exon-sc0000421-1491911889:176707..176958TCONS_00022480-exon-sc0000421-1491911889:176707..176958Clytia hemisphaericaexon
TCONS_00022480-exon-sc0000421-1491911889:175702..176126TCONS_00022480-exon-sc0000421-1491911889:175702..176126Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000421supercontigsc0000421:175702..180100 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0481381	0	0	0	0.259667	0.153895	0.185667	0.637338	1.33865	2.25031	1.12172	0.865611	1.82486	3.13562	4.51017	2.37605	0	0.111118	0	0.160643	0.0930852	0.204317	0	0.0501795	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022480 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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