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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022479 ID=TCONS_00022479|Name=TCONS_00022479|organism=Clytia hemisphaerica|type=transcript|length=4150bpRun BLAST on NCBI protein sequence of TCONS_00022479-protein >TCONS_00022479-protein ID=TCONS_00022479-protein|Name=TCONS_00022479-protein|organism=Clytia hemisphaerica|type=polypeptide|length=678bp MFRYLTSLRNGDNDCAEQHRNEATQDGGERNGGKQGKFQTLCSFAIKKTFRun BLAST on NCBI transcript from alignment at sc0000421:149251..161282- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022479 ID=TCONS_00022479|Name=TCONS_00022479|organism=Clytia hemisphaerica|type=transcript|length=12032bp|location=Sequence derived from alignment at sc0000421:149251..161282- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000421:149251..161282- >TCONS_00022479 ID=TCONS_00022479|Name=TCONS_00022479|organism=Clytia hemisphaerica|type=CDS|length=22407bp|location=Sequence derived from alignment at sc0000421:149251..161282- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022479 vs. Swiss-Prot (Human)
Match: CATK (Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 2.108e-55 Identity = 118/310 (38.06%), Postives = 178/310 (57.42%), Query Frame = 2
Query: 1226 EFVVEKIFTDYKNLFQKEYKNEKEHVKRKDIFRHNLRYINHKNRQNL----TYKLHLNHFADITDEEMKQ-YRGLLNESYVDHKAEPFKAPQINYHGIAVPKSLDWRKYGAISEVSSQGICGSCYAYAVTGAVEAGHFIKTGKRIKLSEQQIVDCSWGFGNRGCKGGYPYRAMQWSIQHGGIATSESYGKYLAQEGYCHFGNVTHGAKVEGYYNVTKGNVTQLKHALALYGPVTVLINTRPKSFKFYDNGVYYDKECD-DRLDHAALVVGYGTSDTGESYWLIKNSWSVSWGHKGFMKIAM-RNDNCGVT 2134
E +++ + +K +K+Y N+ + + R+ I+ NL+YI+ N + TY+L +NH D+T EE+ Q GL + P+ + G A P S+D+RK G ++ V +QG CGSC+A++ GA+E KTGK + LS Q +VDC N GC GGY A Q+ ++ GI + ++Y Y+ QE C + AK GY + +GN LK A+A GPV+V I+ SF+FY GVYYD+ C+ D L+HA L VGYG G +W+IKNSW +WG+KG++ +A +N+ CG+
Sbjct: 19 EEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPLSHSRSNDTLYIPE--WEGRA-PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SENDGCGGGYMTNAFQYVQKNRGIDSEDAY-PYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI-QKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIA 321 The following BLAST results are available for this feature:
BLAST of TCONS_00022479 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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