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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022473 ID=TCONS_00022473|Name=TCONS_00022473|organism=Clytia hemisphaerica|type=transcript|length=2594bp GNAGCCAGGGTATATGTGGATCATGTTATGCATATGCAGTGACAGGAGCT GTCGAAGCTGGCCATTTCATAAAGACGGGGAAACGTATCAAATTATCAGA ACAGCAAATAGTAGATTGTTCATGGGGGTTCGGTAATCGTGGTTGTAAAG GGGGATATCCTTACCGTGCCATGCAATGGAGCATTCAACACGGTGGAATT GCAACAAGTGAAAGTTATGGAAAATATCTAGCTCAGGAAGGTTATTGTCA TTTCGGGAACGTGACACACGGAGCAAAAGTTGAAGGATATTATAACGTGA CTAAAGGGAATGTCACGCAACTCAAACACGCTCTTGCTTTGTATGGTCCT GTAACCGTTCTCATAAACACACGCCCGAAATCATTCAAATTCTACGATAA TGGAGTTTACTACGACAAAGAATGTGATGACCGTTTGGATCATGCAGCAC TGGTAGTTGGATATGGAACTTCTGATACAGGTGAAAGTTACTGGTTAATT AAGAATTCATGGTCAGTTTCTTGGGGACATAAAGGTTTTATGAAGATTGC TATGCGGAATGATAATTGTGGTGTCACTCAAAAACCTGTCGTTGTTAAAG TCAAGTGAAAGAAAAATTACTAGTGGAACAATCGAAACTCATGGTGAATA CCCAAAAGCATGACCTTTCAAAATGATGATTTTGATACCCAGAGTGGGTA CTTGGGCAAAAAGTTCCCTTGCGGGTACCTTTTTGGGGGAAGTTTGGGAA GAATAGTTATTAATTTTTGAGAAAATTTGTCTCACGTAGCATTTTTAGAA CCTCAATGGACCACCCCACCCCATCGCTCGGCAAAGTAATTCCCCCCCCG GGTTGCGATGTCACTCAAAAATCAGTCAAAAGAAAGGAAATTTGTGGAAA GATCACAATTCGTGATCCATATCTAAAGTAGTATTGCTTCATAAAAATTA CCTATCTAAAAGATAACTGTGACAACACTTAAAAACCGTTCTTGTCAAAG TCAAATATACCGGAAATTTCTGGACTGATTTAAACCCTTTCCGTGCCGAT GTCGGCATATGCCGACATGAGCATTTTCAATCTCCTTGCCATTGTCGGGA TTTACCGACATACGAAGTTTCGACCTATTTGCCGAAAATTTATCATTTTT TACAAAATTTTTGTATTAGGTGGTTTGAAATGAAAAAAATGAATCGTTAC AAACTTTTCTATGTTGAAAAATAACTATTCTACAATGTTTAACTCAAAAT TATAGTCCTTGGCTAATACTTCATATATTATTCAGAAAATTAAGTCACAA TCGCTACTTTTTGCCCATGTCTTTTTTTCCCGTGGCAAATAGGTTGAACC TTAAAAAATACGCATGGCAGTTAAAGGGTTAAAGAACACTATAATCAAGA ATGTCCTTGCTGAAAAGTTTCTGGAATGATCGAATTTTGGTTCTTGGAGA AATTTCCGGGCTAATCGAATTGGTAAAACCTATGCTCCGGTGAGGCTTAT TTTGTTCTCCTAAAACTCATAAGATATACAAAGACTCATTCTTCCATATt caacataaacataaacagaTATGGaaagaattacaaaataaaGGATTAGT AAAACATCATTTTATATGTATTGACCATACGTTCgaaacagataaaaaat accggagagaaagaagaaaaaaacatctaaaaatatttcactgcCATTTG GTGTtgttttttctcgaatttttttctcttctaccTGCTTACGACATTTT TCCTACCTAGCCAACTCGCTAAAGAAAGTTGTCACACAGCGAATGTCATA GATGAGAGCACAATTCGTAGGAGTGAGAAAAAGACCAGGAGTGATAAAAC CATTGTATTAatttaatctcaaaaaattgaagattaaAATCACTTACTCA ACTTCATTGTAGTTGGAAAAAGGTTTGCGAAAGTGTTTCTTAATTGACAA GAGTACTGGTGACAAACTTCTAACCTTCCCGAataaaaagatttggaaat agTCCCCTTGTTCGTATTCTTTTCCAAAATATCATATATTTTGACACTAC ACTTACCCACCTACCCACGTAAAAGGTTACCGAAAATCTTTTAAAGCAGT CCATGAAAAAACTCAGAAAAAGTCCTCTAAGTTGTCTTTGGTTCATGGTG CAGTAATCGAGCAAtcgacataaaaaataatttacctcaaATTTAGATTT TCTGAATTTCGAGGGTCACTTTTATCGATATTTGCTCCGTGTTTTACACA CATGGAACTCAAAATAagaactcgaacccagtcccttagtatgatttttt tatgattctgttggAGCTCAGCTCGCTTTTATATGAATAGCTATGATAGC TCTCACAAAAGTAATAACGTCCATTAGTAGAATCATAAAGTAGTGCAAGT GGCTGTGGGTATATGAGATTGACAAGAATATTGACGTTTTTAATaagatg tttttaattttttttaggtaGATActtattttgccatttttgtaaattgt aaataatgacaaatatttgatgaaaaaaattatttgtctTGACTATTATT TTATTTGAAGAACACAGCTGTATATGTGGCTTAGAATTAGGCCT Run BLAST on NCBI transcript from alignment at sc0000421:149251..155963- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022473 ID=TCONS_00022473|Name=TCONS_00022473|organism=Clytia hemisphaerica|type=transcript|length=6713bp|location=Sequence derived from alignment at sc0000421:149251..155963- (Clytia hemisphaerica) GNAGCCAGGGTATATGTGGATCATGTTATGCATATGCAGTGACAGGAGCT
GTCGAAGCTGGCCATTTCATAAAGGTAGGTTGTCGGATGATAGAATGTGT
GTGCCCTGAAAAATGAAATCTTGATTTAAGATTTATGTTGAGGGTGCTTA
CCCATGACAAATGTCCTTGAAGGTATTTAGTGGTTTTCATAAATCTAATT
CTTCCTTTTTTTATGTTCTACAGGCATTGATTGGATATCTCATGAATAGT
AATTAAAAGGACTAGTATTCTTGAATTCCGTCTGAGAGGCCTGAGTTCGA
TACCTATTCCATGTCAATGCACCTCCTCTTAAATTACACCTTTAAACCAG
CTACCAGAACGAATGCATTTTTATATAGATTTAGAATTTTGTCGTATTTT
ATTGAATTTAAGAGTTGTCCAGTAAAATTTGACAGAATAATGAATTCTCA
CAGCAAATAATATTCTAACATGTTTAAGCATCAAATAGTGTCGCTAATAT
TGCCGAAATTTGACCAAAGTCTTACTTGGACTTTTCTTGAAAAAATCTGA
ATATTTGGGGTGGAGGATATAACATTTATTTTGGAAATTTACCCCCCATA
GAGCAGGTCCAACTCCCCGAACAAACATTATACATGACTCGCACCCCCCC
CGCCTGAGGGGGGAGCTACAAAATTTGTCATATAAGAGGTGGGAGCTGCT
TGTTTTTCCCGACAGGCGGGGGGGGGCTCTATCTTGNGGACCTAAAATTT
TATCAGGCTGGGGGGACCTTGTTCTCAGGGGGGACCTAAATTTGGCGGGG
GGACCTAGAACCCCAGTCGGAGCCATGTTAGTTGACCCCCTGAACACTCA
AAATTACCCTCAAACGGAACAAAATTACCCCCTAACAGAGATGTTTAACC
CCCGGACAAGGAAAATTTGCAGATTTTTCTCTACACCGGAAACTATATCC
TCCACCCCCCCCATGTACGAACATTTTCTGGAAGAGCCTCTTTCAACATC
ATCATTATTCTTTAGACGGGGAAACGTATCAAATTATCAGAACAGCAAAT
AGTAGATTGTTCATGGGGGTTCGGTAATCGTGGTTGTAAAGGGGGATATC
CTTACCGTGCCATGCAATGGAGCATTCAACACGGTGGAATTGCAACAAGT
GAAAGTTATGGAAAATATCTAGCTCAGGTAAGTTCACCACTTGGGGAGGG
AGATATAACCGAAGGCTAGAGGCAAATCACTTACGTAGGATTTGAAGCCA
CTTAAACTTCCACTTATATTACAGGGGTGTCTCACAGCCCCGGTGAAACT
TTTTCCTACAGAAGGGATAAAAATTGTGATTGAAATCTTTTTAGGGATAA
AAATTCTATTACTCCAAGGTAAAATAATTCCATAGGGATGGTTTTGGAAC
ATTGAATTTCGAATGGGGACGAAATCAAAGTCAATTTCTCAGTGGGGCTG
AAATTCTAGGGTATTTTTCCAACCGGGGACAAAATTTTTGCCAAATTTTA
TAGTGGGGCTGGGGCCCCCAGTGGGTCTGTGACACAGAGGTGTTATATTG
AACTGCCCATGTTGTTTTCACGCAGATGCTATTTTGAAAGCATACATCTC
GGATTTTAACGGATATCATATAAGTTGATGCTTTCACCATATACAAGCAA
AAGATTCCATTGTCTTTCTTTTTCTTCAATTAATGCTCAATTTTTTTTGG
AAGAATGGAGTCGTGTAAAGTAGACTTTAGAAAGAGAGAGAGAGGAAAAA
ATAATCTTTTGCCTGAACCCTCAGAAGAGAAAAAAGTTTCCGCAGTCTCA
TAACCATATGGCACAGGTTTCGAAAAAAAAANNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNTTTCAATCCAGGAAGGTTATTGTCATTTCGGGAACGTGAC
ACACGGAGCAAAAGTTGAAGGATATTATAACGTGACTAAAGGGAATGTCA
CGCAACTCAAACACGCTCTTGCTTTGTATGGTCCTGTAACCGTTCTCATA
AACACACGCCCGAAATCATTCAAATTCTACGATAATGGAGTTTACTACGA
CAAAGAATGTGGTACGTAATATCTTTGTAGCTCAAACTGGTACACAGTTC
CTTAGGTCCCATTTTTAAAGGTCAAGCTCATTCCCAGTTCCTTAAAGTCT
GTCTCAAAATAATTTGCAGCTGAGACAAAAATGGGTTGTAACTTTTGATA
GAATTCGAATTAAGTTATGATTTTGTGCTCATTGAAAAGATATTTGTGAG
TGGAATATTATCAAGCAAAAATAAATTTGAAAAAACAAGAAAAATGAAAA
TGAAAAATGAAGAAGTTGATTTTTTTCTTCTTCTTTTTTTATTTTCATTT
TTCTTTATTTTTCAATTTTTTTTACAGTTATTTTTTGCCTCAGCTGCAAA
TTATTTTGAGACGCATATTTATGATTCTAAACTCTTTTTCCTCTATGTGT
ATATTTCACCAATATTCAACCTCGCTTTTGCTATCGAAATTTTGTACATA
TAATGATGCATTCCCTCGTATTACTGTTTTTCCAAATATTTTTAGATGAC
CGTTTGGATCATGCAGCACTGGTAGTTGGATATGGAACTTCTGATACAGG
TGAAAGTTACTGGTTAATTAAGAATTCATGGTCAGTTTCTTGGGGACATA
AAGGTTTTATGAAGATTGCTATGCGGAATGATAATTGTGGTGTCACTCAA
AAACCTGTCGTTGTTAAAGTCAAGTGAAAGAAAAATTACTAGTGGAACAA
TCGAAACTCATGGTGAATACCCAAAAGCATGACCTTTCAAAATGATGATT
TTGATACCCAGAGTGGGTACTTGGGCAAAAAGTTCCCTTGCGGGTACCTT
TTTGGGGGAAGTTTGGGAAGAATAGTTATTAATTTTTGAGAAAATTTGTC
TCACGTAGCATTTTTAGAACCTCAATGGACCACCCCACCCCATCGCTCGG
CAAAGTAATTCCCCCCCCGGGTTGCGATGTCACTCAAAAATCAGTCAAAA
GAAAGGAAATTTGTGGAAAGATCACAATTCGTGATCCATATCTAAAGTAG
TATTGCTTCATAAAAATTACCTATCTAAAAGATAACTGTGACAACACTTA
AAAACCGTTCTTGTCAAAGTCAAATATACCGGAAATTTCTGGACTGATTT
AAACCCTTTCCGTGCCGATGTCGGCATATGCCGACATGAGCATTTTCAAT
CTCCTTGCCATTGTCGGGATTTACCGACATACGAAGTTTCGACCTATTTG
CCGAAAATTTATCATTTTTTACAAAATTTTTGTATTAGGTGGTTTGAAAT
GAAAAAAATGAATCGTTACAAACTTTTCTATGTTGAAAAATAACTATTCT
ACAATGTTTAACTCAAAATTATAGTCCTTGGCTAATACTTCATATATTAT
TCAGAAAATTAAGTCACAATCGCTACTTTTTGCCCATGTCTTTTTTTCCC
GTGGCAAATAGGTTGAACCTTAAAAAATACGCATGGCAGTTAAAGGGTTA
AAGAACACTATAATCAAGAATGTCCTTGCTGAAAAGTTTCTGGAATGATC
GAATTTTGGTTCTTGGAGAAATTTCCGGGCTAATCGAATTGGTAAAACCT
ATGCTCCGGTGAGGCTTATTTTGTTCTCCTAAAACTCATAAGATATACAA
AGACTCATTCTTCCATATTCAACATAAACATAAACAGATATGGAAAGAAT
TACAAAATAAAGGATTAGTAAAACATCATTTTATATGTATTGACCATACG
TTCGAAACAGATAAAAAATACCGGAGAGAAAGAAGAAAAAAACATCTAAA
AATATTTCACTGCCATTTGGTGTTGTTTTTTCTCGAATTTTTTTCTCTTC
TACCTGCTTACGACATTTTTCCTACCTAGCCAACTCGCTAAAGAAAGTTG
TCACACAGCGAATGTCATAGATGAGAGCACAATTCGTAGGAGTGAGAAAA
AGACCAGGAGTGATAAAACCATTGTATTAATTTAATCTCAAAAAATTGAA
GATTAAAATCACTTACTCAACTTCATTGTAGTTGGAAAAAGGTTTGCGAA
AGTGTTTCTTAATTGACAAGAGTACTGGTGACAAACTTCTAACCTTCCCG
AATAAAAAGATTTGGAAATAGTCCCCTTGTTCGTATTCTTTTCCAAAATA
TCATATATTTTGACACTACACTTACCCACCTACCCACGTAAAAGGTTACC
GAAAATCTTTTAAAGCAGTCCATGAAAAAACTCAGAAAAAGTCCTCTAAG
TTGTCTTTGGTTCATGGTGCAGTAATCGAGCAATCGACATAAAAAATAAT
TTACCTCAAATTTAGATTTTCTGAATTTCGAGGGTCACTTTTATCGATAT
TTGCTCCGTGTTTTACACACATGGAACTCAAAATAAGAACTCGAACCCAG
TCCCTTAGTATGATTTTTTTATGATTCTGTTGGAGCTCAGCTCGCTTTTA
TATGAATAGCTATGATAGCTCTCACAAAAGTAATAACGTCCATTAGTAGA
ATCATAAAGTAGTGCAAGTGGCTGTGGGTATATGAGATTGACAAGAATAT
TGACGTTTTTAATAAGATGTTTTTAATTTTTTTTAGGTAGATACTTATTT
TGCCATTTTTGTAAATTGTAAATAATGACAAATATTTGATGAAAAAAATT
ATTTGTCTTGACTATTATTTTATTTGAAGAACACAGCTGTATATGTGGCT
TAGAATTAGGCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00022473-exon-sc0000421-1575043694:155890..155963 | TCONS_00022473-exon-sc0000421-1575043694:155890..155963 | Clytia hemisphaerica | exon |
| TCONS_00022473-exon-sc0000421-1575043694:154787..154948 | TCONS_00022473-exon-sc0000421-1575043694:154787..154948 | Clytia hemisphaerica | exon |
| TCONS_00022473-exon-sc0000421-1575043694:151903..152092 | TCONS_00022473-exon-sc0000421-1575043694:151903..152092 | Clytia hemisphaerica | exon |
| TCONS_00022473-exon-sc0000421-1575043694:149251..151418 | TCONS_00022473-exon-sc0000421-1575043694:149251..151418 | Clytia hemisphaerica | exon |
| TCONS_00022473-exon-sc0000421-1510915933:155890..155963 | TCONS_00022473-exon-sc0000421-1510915933:155890..155963 | Clytia hemisphaerica | exon |
| TCONS_00022473-exon-sc0000421-1510915933:154787..154948 | TCONS_00022473-exon-sc0000421-1510915933:154787..154948 | Clytia hemisphaerica | exon |
| TCONS_00022473-exon-sc0000421-1510915933:151903..152092 | TCONS_00022473-exon-sc0000421-1510915933:151903..152092 | Clytia hemisphaerica | exon |
| TCONS_00022473-exon-sc0000421-1510915933:149251..151418 | TCONS_00022473-exon-sc0000421-1510915933:149251..151418 | Clytia hemisphaerica | exon |
| TCONS_00022473-exon-sc0000421-1491911889:155890..155963 | TCONS_00022473-exon-sc0000421-1491911889:155890..155963 | Clytia hemisphaerica | exon |
| TCONS_00022473-exon-sc0000421-1491911889:154787..154948 | TCONS_00022473-exon-sc0000421-1491911889:154787..154948 | Clytia hemisphaerica | exon |
| TCONS_00022473-exon-sc0000421-1491911889:151903..152092 | TCONS_00022473-exon-sc0000421-1491911889:151903..152092 | Clytia hemisphaerica | exon |
| TCONS_00022473-exon-sc0000421-1491911889:149251..151418 | TCONS_00022473-exon-sc0000421-1491911889:149251..151418 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000421 | supercontig | sc0000421:149251..155963 - |
Blast
BLAST of TCONS_00022473 vs. Swiss-Prot (Human)
Match: CATL2 (Cathepsin L2 OS=Homo sapiens GN=CTSV PE=1 SV=2) HSP 1 Score: 157.532 bits (397), Expect = 9.548e-42 Identity = 82/197 (41.62%), Postives = 120/197 (60.91%), Query Frame = 3
Query: 3 SQGICGSCYAYAVTGAVEAGHFIKTGKRIKLSEQQIVDCSWGFGNRGCKGGYPYRAMQWSIQHGGIATSESYGKYLAQEGYCHFGNVTHGAKVEGYYNVTKGNVTQLKHALALYGPVTVLINTRPKSFKFYDNGVYYDKECDDR-LDHAALVVGY---GTSDTGESYWLIKNSWSVSWGHKGFMKIAM-RNDNCGVT 578
+Q CGSC+A++ TGA+E F KTGK + LSEQ +VDCS GN+GC GG+ RA Q+ ++GG+ + ESY Y+A + C + A G+ V G L A+A GP++V ++ SF+FY +G+Y++ +C + LDH LVVGY G + YWL+KNSW WG G++KIA +N++CG+
Sbjct: 131 NQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESY-PYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIA 326
The following BLAST results are available for this feature:
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