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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022446 ID=TCONS_00022446|Name=TCONS_00022446|organism=Clytia hemisphaerica|type=transcript|length=2947bp
ttttgcctgggacctagacCTGGGCTGACCCTATGAACTATGCAATGAGT
CTATAAATATCACAAACTTCGATACCTTTAAATAATAACCTTGTCCATTA
TATGCTATTATATCTCCatatacttttcttttcttttcatctttttagaa
aaactgtttttctatAATAAATAGTATAATATAAAGACAATAAAATATGA
TGGATACCAAAACACTTGAAGATTTAAATGAAGATTGTTTGATAAAGATT
ATTGATTTGTTGGATTTGCAATCATGCATCAACTTGGCAAAAGCatcaaa
aatccttaaaatgcattttaaagaaaatatggCCTTGAATTTCATGCAAA
AGAAGATGCAGCAGTTCCTCATCAAAACAGCAATGGATTGCTACACTACT
TGCTCTTACaagaactttcaaatttttcttcatttatgcAAGTCCATTCT
GTCTCATTTCTCACATATGGCATATAACTTTCGTACATTGGAGAATGCAA
ATACTGCTAAAGATAAATTAATAATTGAGTTCATCATGAAAAGCTTGGCA
CTTTCAACATCTGGACTTGATATATTCCCACCGGTCGATGTTGACCATAG
TTCAAACACATGGATCAACCACTGGTATTGCTATGAGGTTTATGAGAAcc
gatttatttttctcatgaATACAGTAAATATTGATGGTTATTATAAAGGA
AAGAAGAAGCTTGACCATGAATTTGTTTCGGCTGTCATTCACCACCCTTA
CTCAGTGGAAGAAAGAACTTTGTATTTTGCACAAGTAGCTGATCCCATAT
GTGACTGGAATGCCATTATTAAGCAATGCCGTTATTTGTCAATTAATGAA
GACCCAAACACCTACTTAGAATATATTGCTGATGATCTCAAACAAATTCC
TATCAATGAAGAAGATAAAGAAAGAGTCACACCAGAATTTCTTTTGAAGC
TTGTTGCATATCGAGAAAATCCACTTGAGAATGATGATAATATTAATaat
ggttttgatgaaaatgaaattgttcgACGGATTGAGTACTCAAAAGAAAT
AGTTGCTAAAAGCTTTGATAAATTCTTGTATGAGCTTTCATATAGTAAAT
GTTTCCCCAAAGTGGAAGCTCAATATACATTcatgataaaaaattatttt
gatcattTCATGGGTATTTTTGACACTCTTTCTTATCatcatttaaataa
aattttgcgGAACTTGTTGACATTATTCAAACCCATAATCTTGCTTGCAT
GCTCCATGAAACCCTTACCGCCAGCTGCATTTGCTTTGCTACAAAGGATT
TCACTAGATGAGTGTACTTTCACTAACAAAGAGGAAgtagttgttctttt
tttgaatgataaaagCCGCATTGAGTGGTCTTATGTCAATTCATTTCCAT
TCTTGAATCAACTGCGCATAGATGGAGAGCTGTTACTCAGTTATTTTTTT
GACAGAACTACAggaaaaaaagttgtcaaattcCCTGTTAAAGATGATGG
TGGCATTCCTATTGATTCTGAAGCTGAGCGAACAAGAttcaaagaattgg
aaaatcaACATAAAGTTGTCAATCTGTTACATATTAGAGATATTTTCGAT
AATAAATTCGAAGAAGGAATTACTTTGGATTTTTTAAGTcagttttttct
ttgtttgacacAGAGTCCCTTCATATCCATGTATACAAATTTTAAATGGA
CAAGCTTGGCTGACGACGATGATGATATAATTATGTTAAATTAGTTTTTA
TAGCTTCTCTAGTTTAATTTTAGTTTTATTGCAATATCATGTAGACATGA
TCATATGATATTTCTGACACGTCACTGTCTGAATCAAGACAAATTTACTA
TTTCTAGTACCTTTTCCATTCCTCcccatttttaattttatcgGATACTA
TACCTGTTCACTCATGATCACAACCTAAGTTATTTTTATGCTTTGTTTTT
GGGTAGGCtggcaaatgaaaaattaactctggcgatttctagattctagg
ccggTGAATTCTTAGCAAGCGCAGTGTATTAATTAGcgtaaatatgtact
tgaggcaGCAATTCGAACTTTTCGTTCGTGTCTTGGACCTGCGAAATCTG
CCGTTCGCCGGGCCTAAATAATGTGGTTAAATATTCCTATACCCACTAAG
GTAATTGCTGTTAGTTAGCAGATTTCCCATGAAAGTGTTCAGTTGGTCTG
ACTAGTCTGTCATGCTATTTAATAATGTTTACACTAGATTTTCAAacgtt
tgaatttcaaaatattcgaCCCCGCTGTTAATAAATGCCAGAATGAAATA
CAAGAGAGAGGACTtcacgtcttttttataagaacatccaaaatttttga
atcctttgatgttcttaactttttgaggttTAAgccatgttcttattttg
gcgagtttCTGAATAGtttggtccattttcctaaaaaaaaaaggtgtttt
agagttcacaaagccttaaaatgttcataacttgttcttaatattttggc
catcgaagcctaatgttcttaatagtttgttcttgaaaaaaaacgtgtag
tcagCTCTAGAACCGAACACTTCCTTTTATATGTGAAGCctgatccagtc
aagtagtAGAAATCAGTGGCATCATCCAGCTTTTATGTTTATTGAAATGC
TATTTTACCAAATCACTTTGTAGTCACtagtatttttatgtttttacaaA
TTTGTACATAAAGATAACTATCTAACACTAactttttcataatattttaG
TTGCTTTATTTTTTATGGGAGGATACTATGAGACTCCCAAAGCAGCGAAT
GCTAggtttaattttgaaagagtgtattatattttttgttgagcATTTTC
TTTTTGTGTAATATAAACTTTGGTGTCAATGATTATAACGATTTTCGGGG
cgattttcctataaaaagaaaGCTCTCTTAGCTATGGAAAAGTGGCA Run BLAST on NCBI protein sequence of TCONS_00022446-protein >TCONS_00022446-protein ID=TCONS_00022446-protein|Name=TCONS_00022446-protein|organism=Clytia hemisphaerica|type=polypeptide|length=515bp
MMDTKTLEDLNEDCLIKIIDLLDLQSCINLAKASKILKMHFKENMALNFM
QKKMQQFLIKTAMDCYTTCSYKNFQIFLHLCKSILSHFSHMAYNFRTLEN
ANTAKDKLIIEFIMKSLALSTSGLDIFPPVDVDHSSNTWINHWYCYEVYE
NRFIFLMNTVNIDGYYKGKKKLDHEFVSAVIHHPYSVEERTLYFAQVADP
ICDWNAIIKQCRYLSINEDPNTYLEYIADDLKQIPINEEDKERVTPEFLL
KLVAYRENPLENDDNINNGFDENEIVRRIEYSKEIVAKSFDKFLYELSYS
KCFPKVEAQYTFMIKNYFDHFMGIFDTLSYHHLNKILRNLLTLFKPIILL
ACSMKPLPPAAFALLQRISLDECTFTNKEEVVVLFLNDKSRIEWSYVNSF
PFLNQLRIDGELLLSYFFDRTTGKKVVKFPVKDDGGIPIDSEAERTRFKE
LENQHKVVNLLHIRDIFDNKFEEGITLDFLSQFFLCLTQSPFISMYTNFK
WTSLADDDDDIIMLN Run BLAST on NCBI transcript from alignment at sc0000421:42505..45992+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022446 ID=TCONS_00022446|Name=TCONS_00022446|organism=Clytia hemisphaerica|type=transcript|length=3488bp|location=Sequence derived from alignment at sc0000421:42505..45992+ (Clytia hemisphaerica)
ttttgcctgggacctagacCTGGGCTGACCCTATGAACTATGCAATGAGT
CTATAAATATCACAAACTTCGATACCTTTAAATAATAACCTTGTCCATTA
TATGCTATTATATCTCCatatacttttcttttcttttcatctttttagaa
aaactgtttttctatAATAAATAGTATAATATAAAGACAATAAAATATGA
TGGATACCAAAACACTTGAAGATTTAAATGAAGATTGTTTGATAAAGATT
ATTGATTTGTTGGATTTGCAATCATGCATCAACTTGGCAAAAGCatcaaa
aatccttaaaatgcattttaaagaaaatatggCCTTGAATTTCATGCAAA
AGAAGATGCAGCAGTTCCTCATCAAAACAGCAATGGATTGCTACACTACT
TGCTCTTACaagaactttcaaatttttcttcatttatgcAAGTCCATTCT
GTCTCATTTCTCACATATGGCATATAACTTTCGTACATTGGAGAATGCAA
ATACTGCTAAAGATAAATTAATAATTGAGTTCATCATGAAAAGCTTGGCA
CTTTCAACATCTGGACTTGATATATTCCCACCGGTCGATGTTGACCATAG
TTCAAACACATGGATCAACCACTGGTATTGCTATGAGGTTTATGAGAAcc
gatttatttttctcatgaATACAGTAAATATTGATGGTTATTATAAAGGA
AAGAAGAAGCTTGACCATGAATTTGTTTCGGCTGTCATTCACCACCCTTA
CTCAGTGGAAGAAAGAACTTTGTATTTTGCACAAGTAGCTGATCCCATAT
GTGACTGGAATGCCATTATTAAGCAATGCCGGTAAGTTAACAAACGTTTT
AAAGATTTActtatatttttatcaattttcacaTTGATTTTTCGAACGAC
AAGTTAGTCATTACTTACcttaaaaaatttctctttatAAAATAGATGAA
TTCTACAGTCTCTCCCATTAAGGCCATTTTGTCTTCAGCGTTTATGTTTG
CTTGGTCAGCAGTCTCTCATGCAATGTGTGTAAATGTGTGTATACTATTT
CAGTAAAACATGATATAAGTCATAATGGGGAAATCAATTTTATACGAGTA
CGCATAGTAACCTTGTTAgatataatattttgaaaaaagtaggCTTGTAA
GCAGCTGACAGGTGTGTTGAGAGCAGTGAACTGATGTCAACAGGACTGAT
TTTTTGTACTTACTTATTCCTGTAGGATTCGTAAATACTTTGTCAGTTCT
AATGGAAAGTTGACATAATTTGCCATNTAGGATTCGTAAATACTTTGTCA
GTTCTAATGAAAAGTTGACATAATTTGCCATGGAATATGTTACAATCTTC
TACAACATTTCTCTTTTTTCAGTTATTTGTCAATTAATGAAGACCCAAAC
ACCTACTTAGAATATATTGCTGATGATCTCAAACAAATTCCTATCAATGA
AGAAGATAAAGAAAGAGTCACACCAGAATTTCTTTTGAAGCTTGTTGCAT
ATCGAGAAAATCCACTTGAGAATGATGATAATATTAATaatggttttgat
gaaaatgaaattgttcgACGGATTGAGTACTCAAAAGAAATAGTTGCTAA
AAGCTTTGATAAATTCTTGTATGAGCTTTCATATAGTAAATGTTTCCCCA
AAGTGGAAGCTCAATATACATTcatgataaaaaattattttgatcattTC
ATGGGTATTTTTGACACTCTTTCTTATCatcatttaaataaaattttgcg
GAACTTGTTGACATTATTCAAACCCATAATCTTGCTTGCATGCTCCATGA
AACCCTTACCGCCAGCTGCATTTGCTTTGCTACAAAGGATTTCACTAGAT
GAGTGTACTTTCACTAACAAAGAGGAAgtagttgttctttttttgaatga
taaaagCCGCATTGAGTGGTCTTATGTCAATTCATTTCCATTCTTGAATC
AACTGCGCATAGATGGAGAGCTGTTACTCAGTTATTTTTTTGACAGAACT
ACAggaaaaaaagttgtcaaattcCCTGTTAAAGATGATGGTGGCATTCC
TATTGATTCTGAAGCTGAGCGAACAAGAttcaaagaattggaaaatcaAC
ATAAAGTTGTCAATCTGTTACATATTAGAGATATTTTCGATAATAAATTC
GAAGAAGGAATTACTTTGGATTTTTTAAGTcagttttttctttgtttgac
acAGAGTCCCTTCATATCCATGTATACAAATTTTAAATGGACAAGCTTGG
CTGACGACGATGATGATATAATTATGTTAAATTAGTTTTTATAGCTTCTC
TAGTTTAATTTTAGTTTTATTGCAATATCATGTAGACATGATCATATGAT
ATTTCTGACACGTCACTGTCTGAATCAAGACAAATTTACTATTTCTAGTA
CCTTTTCCATTCCTCcccatttttaattttatcgGATACTATACCTGTTC
ACTCATGATCACAACCTAAGTTATTTTTATGCTTTGTTTTTGGGTAGGCt
ggcaaatgaaaaattaactctggcgatttctagattctaggccggTGAAT
TCTTAGCAAGCGCAGTGTATTAATTAGcgtaaatatgtacttgaggcaGC
AATTCGAACTTTTCGTTCGTGTCTTGGACCTGCGAAATCTGCCGTTCGCC
GGGCCTAAATAATGTGGTTAAATATTCCTATACCCACTAAGGTAATTGCT
GTTAGTTAGCAGATTTCCCATGAAAGTGTTCAGTTGGTCTGACTAGTCTG
TCATGCTATTTAATAATGTTTACACTAGATTTTCAAacgtttgaatttca
aaatattcgaCCCCGCTGTTAATAAATGCCAGAATGAAATACAAGAGAGA
GGACTtcacgtcttttttataagaacatccaaaatttttgaatcctttga
tgttcttaactttttgaggttTAAgccatgttcttattttggcgagtttC
TGAATAGtttggtccattttcctaaaaaaaaaaggtgttttagagttcac
aaagccttaaaatgttcataacttgttcttaatattttggccatcgaagc
ctaatgttcttaatagtttgttcttgaaaaaaaacgtgtagtcagCTCTA
GAACCGAACACTTCCTTTTATATGTGAAGCctgatccagtcaagtagtAG
AAATCAGTGGCATCATCCAGCTTTTATGTTTATTGAAATGCTATTTTACC
AAATCACTTTGTAGTCACtagtatttttatgtttttacaaATTTGTACAT
AAAGATAACTATCTAACACTAactttttcataatattttaGTTGCTTTAT
TTTTTATGGGAGGATACTATGAGACTCCCAAAGCAGCGAATGCTAggttt
aattttgaaagagtgtattatattttttgttgagcATTTTCTTTTTGTGT
AATATAAACTTTGGTGTCAATGATTATAACGATTTTCGGGGcgattttcc
tataaaaagaaaGCTCTCTTAGCTATGGAAAAGTGGCA Coding sequence (CDS) from alignment at sc0000421:42505..45992+ >TCONS_00022446 ID=TCONS_00022446|Name=TCONS_00022446|organism=Clytia hemisphaerica|type=CDS|length=3096bp|location=Sequence derived from alignment at sc0000421:42505..45992+ (Clytia hemisphaerica)
ATGATGGATACCAAAACACTTGAAGATTTAAATGAAGATTGTTTGATAAA
GATTATTGATTTGTTGGATTTGCAATCATGCATCAACTTGGCAAAAGCat
caaaaatccttaaaatgcattttaaagaaaatatggCCTTGAATTTCATG
CAAAAGAAGATGCAGCAGTTCCTCATCAAAACAGCAATGGATTGCTACAC
TACTTGCTCTTACaagaactttcaaatttttcttcatttatgcAAGTCCA
TTCTGTCTCATTTCTCACATATGGCATATAACTTTCGTACATTGGAGAAT
GCAAATACTGCTAAAGATAAATTAATAATTGAGTTCATCATGAAAAGCTT
GGCACTTTCAACATCTGGACTTGATATATTCCCACCGGTCGATGTTGACC
ATAGTTCAAACACATGGATCAACCACTGGTATTGCTATGAGGTTTATGAG
AAccgatttatttttctcatgaATACAGTAAATATTGATGGTTATTATAA
AGGAAAGAAGAAGCTTGACCATGAATTTGTTTCGGCTGTCATTCACCACC
CTTACTCAGTGGAAGAAAGAACTTTGTATTTTGCACAAGTAGCTGATCCC
ATATGTGACTGGAATGCCATTATTAAGCAATGCCGTTATTTGTCAATTAA
TGAAGACCCAAACACCTACTTAGAATATATTGCTGATGATCTCAAACAAA
TTCCTATCAATGAAGAAGATAAAGAAAGAGTCACACCAGAATTTCTTTTG
AAGCTTGTTGCATATCGAGAAAATCCACTTGAGAATGATGATAATATTAA
TaatggttttgatgaaaatgaaattgttcgACGGATTGAGTACTCAAAAG
AAATAGTTGCTAAAAGCTTTGATAAATTCTTGTATGAGCTTTCATATAGT
AAATGTTTCCCCAAAGTGGAAGCTCAATATACATTcatgataaaaaatta
ttttgatcattTCATGGGTATTTTTGACACTCTTTCTTATCatcatttaa
ataaaattttgcgGAACTTGTTGACATTATTCAAACCCATAATCTTGCTT
GCATGCTCCATGAAACCCTTACCGCCAGCTGCATTTGCTTTGCTACAAAG
GATTTCACTAGATGAGTGTACTTTCACTAACAAAGAGGAAgtagttgttc
tttttttgaatgataaaagCCGCATTGAGTGGTCTTATGTCAATTCATTT
CCATTCTTGAATCAACTGCGCATAGATGGAGAGCTGTTACTCAGTTATTT
TTTTGACAGAACTACAggaaaaaaagttgtcaaattcCCTGTTAAAGATG
ATGGTGGCATTCCTATTGATTCTGAAGCTGAGCGAACAAGAttcaaagaa
ttggaaaatcaACATAAAGTTGTCAATCTGTTACATATTAGAGATATTTT
CGATAATAAATTCGAAGAAGGAATTACTTTGGATTTTTTAAGTcagtttt
ttctttgtttgacacAGAGTCCCTTCATATCCATGTATACAAATTTTAAA
TGGACAAGCTTGGCTGACGACGATGATGATATAATTATGTTAAATTAGAT
GATGGATACCAAAACACTTGAAGATTTAAATGAAGATTGTTTGATAAAGA
TTATTGATTTGTTGGATTTGCAATCATGCATCAACTTGGCAAAAGCatca
aaaatccttaaaatgcattttaaagaaaatatggCCTTGAATTTCATGCA
AAAGAAGATGCAGCAGTTCCTCATCAAAACAGCAATGGATTGCTACACTA
CTTGCTCTTACaagaactttcaaatttttcttcatttatgcAAGTCCATT
CTGTCTCATTTCTCACATATGGCATATAACTTTCGTACATTGGAGAATGC
AAATACTGCTAAAGATAAATTAATAATTGAGTTCATCATGAAAAGCTTGG
CACTTTCAACATCTGGACTTGATATATTCCCACCGGTCGATGTTGACCAT
AGTTCAAACACATGGATCAACCACTGGTATTGCTATGAGGTTTATGAGAA
ccgatttatttttctcatgaATACAGTAAATATTGATGGTTATTATAAAG
GAAAGAAGAAGCTTGACCATGAATTTGTTTCGGCTGTCATTCACCACCCT
TACTCAGTGGAAGAAAGAACTTTGTATTTTGCACAAGTAGCTGATCCCAT
ATGTGACTGGAATGCCATTATTAAGCAATGCCGTTATTTGTCAATTAATG
AAGACCCAAACACCTACTTAGAATATATTGCTGATGATCTCAAACAAATT
CCTATCAATGAAGAAGATAAAGAAAGAGTCACACCAGAATTTCTTTTGAA
GCTTGTTGCATATCGAGAAAATCCACTTGAGAATGATGATAATATTAATa
atggttttgatgaaaatgaaattgttcgACGGATTGAGTACTCAAAAGAA
ATAGTTGCTAAAAGCTTTGATAAATTCTTGTATGAGCTTTCATATAGTAA
ATGTTTCCCCAAAGTGGAAGCTCAATATACATTcatgataaaaaattatt
ttgatcattTCATGGGTATTTTTGACACTCTTTCTTATCatcatttaaat
aaaattttgcgGAACTTGTTGACATTATTCAAACCCATAATCTTGCTTGC
ATGCTCCATGAAACCCTTACCGCCAGCTGCATTTGCTTTGCTACAAAGGA
TTTCACTAGATGAGTGTACTTTCACTAACAAAGAGGAAgtagttgttctt
tttttgaatgataaaagCCGCATTGAGTGGTCTTATGTCAATTCATTTCC
ATTCTTGAATCAACTGCGCATAGATGGAGAGCTGTTACTCAGTTATTTTT
TTGACAGAACTACAggaaaaaaagttgtcaaattcCCTGTTAAAGATGAT
GGTGGCATTCCTATTGATTCTGAAGCTGAGCGAACAAGAttcaaagaatt
ggaaaatcaACATAAAGTTGTCAATCTGTTACATATTAGAGATATTTTCG
ATAATAAATTCGAAGAAGGAATTACTTTGGATTTTTTAAGTcagtttttt
ctttgtttgacacAGAGTCCCTTCATATCCATGTATACAAATTTTAAATG
GACAAGCTTGGCTGACGACGATGATGATATAATTATGTTAAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022446-exon-sc0000421-1491911889:42505..43335 | TCONS_00022446-exon-sc0000421-1491911889:42505..43335 | Clytia hemisphaerica | exon |
| TCONS_00022446-exon-sc0000421-1510915933:42505..43335 | TCONS_00022446-exon-sc0000421-1510915933:42505..43335 | Clytia hemisphaerica | exon |
| TCONS_00022446-exon-sc0000421-1575043694:42505..43335 | TCONS_00022446-exon-sc0000421-1575043694:42505..43335 | Clytia hemisphaerica | exon |
| TCONS_00022446-exon-sc0000421-1491911889:43877..45992 | TCONS_00022446-exon-sc0000421-1491911889:43877..45992 | Clytia hemisphaerica | exon |
| TCONS_00022446-exon-sc0000421-1510915933:43877..45992 | TCONS_00022446-exon-sc0000421-1510915933:43877..45992 | Clytia hemisphaerica | exon |
| TCONS_00022446-exon-sc0000421-1575043694:43877..45992 | TCONS_00022446-exon-sc0000421-1575043694:43877..45992 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000421 | supercontig | sc0000421:42505..45992 + |
Blast
The following BLAST results are available for this feature:
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