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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022424 ID=TCONS_00022424|Name=TCONS_00022424|organism=Clytia hemisphaerica|type=transcript|length=2444bp
gtcgattttatgataaaaaaaagttCTGTAATGGGAGATTAACTTTCTTA
AAGAGTGTCACTTATAAGACAATATGTTTGGTTACATGAAGAAATAAAat
gtgaagattttcttttttttcgaaaaatagcaATGTAAAGAATCTATCTA
CAGGTGTATGTACCACAAAAGGCCCTCGAACCGCAGAATGTCagtgtaaa
taaataaaaatgatgggttagttttaaaaatgacagtattcttgatattc
atgacgtaatctttttcgCCGATTTTCATAATCCGCCATTATGGGTGGCA
TAAATCAAAACAAGTCGCTGAAATCAAGCTAAGTTCTTGGCTGAGCTTCT
TGTGTTTCTTGATCCTGTACTGTTTCTTTGGTGCTTTTTTGATTCATTCC
TGCTTCATTTTACAAGGATGGTGAAGGCATGCAGTGTGGTAAATTGTTCA
AACAGATACATTTCGAAAAAGATTGCTGAGAGTGGTgtaaaaaagaaata
caaagCGTACAAAAACATTCCTTTCCATTCTCTCCCTGTTGAAGAAGATA
GACGTGTAAAATGGATTGCTTTCATTAACAGAAAGCCAGGAACTCttcca
aaaaaagtttatgtttgtGGTGATCATTTTGAACTGGGGAAGAAAAGTAA
TGACAAAACACATACTGATTATATACCAACTATTGCTGCTAAAACTAAGG
AGAAAAAGTCATTCGAATCAACAACAcaatcttcatcttcttctacATCG
CCTAGAGTGTCTAAAGCTAAGCTGAAAACACCCAGTAGAAGTCCTTCTAA
ACTTCACTCAGCTTCGTCCTCATTGAAACGAACAATGAGGCACAAAAAGA
TACTGATGGCTCGATTGAATAACCCAACCCCAAGATCCAAGCCAAAACTC
GAAGATACGTTACCTGTAATTGATAACGATGATAACGAAAATCAAGACAA
TGACACTGCTGCTTTgaaagagaagataaaaaatttagaggaaattattt
tgaataaagatAAAGAGCTCTCCTCATCTNAGTCATTCGAATCAACAACA
caatcttcatcttcttctacATCGCCTAGAGTGTCTAAAGCTAAGCTGAA
AACACCCAGTAGAAGTCCTTCTAAACTTCACTCAGCTTCGTCCTCATTGA
AACGAACAATGAGGCACAAAAAGATACTGATGGCTCGATTGAATAACCCA
ACCCCAAGATCCAAGCCAAAACTCGAAGATACGTTACCTGTAATTGATAA
CGATGATAACGAAAATCAAGACAATGACACTGCTGCTTTgaaagagaaga
taaaaaatttagaggaaataattttgaataaagaTAAAGAACTCTCCTCA
TCCAAGcggaaaataaatttattaaagCATAGTAACCGTCACCTGAAAAA
TAGAGTTGAGAAGCTTATCAAGTATAACAATATTACTAATCTCAAACTAA
TTGAAACACGAAAAACTATACGAGAACAtgtttttttagtaaacaaTGAC
ACAGACAAGATGAAATTCTACACAGATCTtccatcttttgaaatttttga
tgaaatcttTAACTTTGTTAAAGATCATGTGGATCGAGATGagaattcga
ttaaattaaCACACAAACAAGAATTCATAATTGTTTTAATGAGGCTTAGA
CTGGGCCTTTTGGAGCAAGATCTGGCGTACAGATTTGGAGTTTCCCAACC
TACTATTTCGAGGATAATCAACCGCTGGATTGGAGTGATGGCTACCAGGC
TTGAATTTCTTATCCACTGGCCTGAAAGAGAGCAACTTAGAAAAACAATG
CCTGGATGTTTTTTGGataactttgaaaaatgtgctGTTATTTTGGactg
ttttgagatttttatcGAGAAGCCTACAGATTTAACTGCTAGGGCCCAAA
CCTGGTCCCAATACAAGCATCATAACACTGTAAAGGTCTTGTTGGGTATG
ACCCCACAAGGGACAATTTCATTCATTTCCCAACCGTGGGGTGGACGAGC
CTCAGATGTTCATGTCACTGAAAATTCAGgccttttgaaaaatcttgttC
CAGGAGATGTTGTGATGGCTGACCGTGGGTTCACCATAAGTGATTCAGTT
GGACTTCATTGTGCTACATTAAAAATTCCTGAGTTTACGAAAGGAAAGTC
TCAACTGGAAAAAGTTTCTCTAGACGAAACGCGTGATCTGGCTTCCGTTA
GAATTCATGTAGAACGAATAATTGGACTGTTACGAAATAAATATACTTTG
TTACAAAAGATTGCCCCTATCAAGATGTTAATGTTAAAAGCCGATGGGAC
ATGTATACTATCAGAAATTCTAATAGTTTGTTCAGCGCTCAGTAATTTAA
ATGGTCCTGTGGTTCCCTNCAGCactgttttctttgtttttgatttcCGG
AAGTGGAATGCGACATTTTGAATACCAGTGCCCAATAAGTTCAG Run BLAST on NCBI transcript from alignment at sc0000417:277751..280194+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022424 ID=TCONS_00022424|Name=TCONS_00022424|organism=Clytia hemisphaerica|type=transcript|length=2444bp|location=Sequence derived from alignment at sc0000417:277751..280194+ (Clytia hemisphaerica)
gtcgattttatgataaaaaaaagttCTGTAATGGGAGATTAACTTTCTTA
AAGAGTGTCACTTATAAGACAATATGTTTGGTTACATGAAGAAATAAAat
gtgaagattttcttttttttcgaaaaatagcaATGTAAAGAATCTATCTA
CAGGTGTATGTACCACAAAAGGCCCTCGAACCGCAGAATGTCagtgtaaa
taaataaaaatgatgggttagttttaaaaatgacagtattcttgatattc
atgacgtaatctttttcgCCGATTTTCATAATCCGCCATTATGGGTGGCA
TAAATCAAAACAAGTCGCTGAAATCAAGCTAAGTTCTTGGCTGAGCTTCT
TGTGTTTCTTGATCCTGTACTGTTTCTTTGGTGCTTTTTTGATTCATTCC
TGCTTCATTTTACAAGGATGGTGAAGGCATGCAGTGTGGTAAATTGTTCA
AACAGATACATTTCGAAAAAGATTGCTGAGAGTGGTgtaaaaaagaaata
caaagCGTACAAAAACATTCCTTTCCATTCTCTCCCTGTTGAAGAAGATA
GACGTGTAAAATGGATTGCTTTCATTAACAGAAAGCCAGGAACTCttcca
aaaaaagtttatgtttgtGGTGATCATTTTGAACTGGGGAAGAAAAGTAA
TGACAAAACACATACTGATTATATACCAACTATTGCTGCTAAAACTAAGG
AGAAAAAGTCATTCGAATCAACAACAcaatcttcatcttcttctacATCG
CCTAGAGTGTCTAAAGCTAAGCTGAAAACACCCAGTAGAAGTCCTTCTAA
ACTTCACTCAGCTTCGTCCTCATTGAAACGAACAATGAGGCACAAAAAGA
TACTGATGGCTCGATTGAATAACCCAACCCCAAGATCCAAGCCAAAACTC
GAAGATACGTTACCTGTAATTGATAACGATGATAACGAAAATCAAGACAA
TGACACTGCTGCTTTgaaagagaagataaaaaatttagaggaaattattt
tgaataaagatAAAGAGCTCTCCTCATCTNAGTCATTCGAATCAACAACA
caatcttcatcttcttctacATCGCCTAGAGTGTCTAAAGCTAAGCTGAA
AACACCCAGTAGAAGTCCTTCTAAACTTCACTCAGCTTCGTCCTCATTGA
AACGAACAATGAGGCACAAAAAGATACTGATGGCTCGATTGAATAACCCA
ACCCCAAGATCCAAGCCAAAACTCGAAGATACGTTACCTGTAATTGATAA
CGATGATAACGAAAATCAAGACAATGACACTGCTGCTTTgaaagagaaga
taaaaaatttagaggaaataattttgaataaagaTAAAGAACTCTCCTCA
TCCAAGcggaaaataaatttattaaagCATAGTAACCGTCACCTGAAAAA
TAGAGTTGAGAAGCTTATCAAGTATAACAATATTACTAATCTCAAACTAA
TTGAAACACGAAAAACTATACGAGAACAtgtttttttagtaaacaaTGAC
ACAGACAAGATGAAATTCTACACAGATCTtccatcttttgaaatttttga
tgaaatcttTAACTTTGTTAAAGATCATGTGGATCGAGATGagaattcga
ttaaattaaCACACAAACAAGAATTCATAATTGTTTTAATGAGGCTTAGA
CTGGGCCTTTTGGAGCAAGATCTGGCGTACAGATTTGGAGTTTCCCAACC
TACTATTTCGAGGATAATCAACCGCTGGATTGGAGTGATGGCTACCAGGC
TTGAATTTCTTATCCACTGGCCTGAAAGAGAGCAACTTAGAAAAACAATG
CCTGGATGTTTTTTGGataactttgaaaaatgtgctGTTATTTTGGactg
ttttgagatttttatcGAGAAGCCTACAGATTTAACTGCTAGGGCCCAAA
CCTGGTCCCAATACAAGCATCATAACACTGTAAAGGTCTTGTTGGGTATG
ACCCCACAAGGGACAATTTCATTCATTTCCCAACCGTGGGGTGGACGAGC
CTCAGATGTTCATGTCACTGAAAATTCAGgccttttgaaaaatcttgttC
CAGGAGATGTTGTGATGGCTGACCGTGGGTTCACCATAAGTGATTCAGTT
GGACTTCATTGTGCTACATTAAAAATTCCTGAGTTTACGAAAGGAAAGTC
TCAACTGGAAAAAGTTTCTCTAGACGAAACGCGTGATCTGGCTTCCGTTA
GAATTCATGTAGAACGAATAATTGGACTGTTACGAAATAAATATACTTTG
TTACAAAAGATTGCCCCTATCAAGATGTTAATGTTAAAAGCCGATGGGAC
ATGTATACTATCAGAAATTCTAATAGTTTGTTCAGCGCTCAGTAATTTAA
ATGGTCCTGTGGTTCCCTNCAGCactgttttctttgtttttgatttcCGG
AAGTGGAATGCGACATTTTGAATACCAGTGCCCAATAAGTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022424-exon-sc0000417-1491911889:277751..280194 | TCONS_00022424-exon-sc0000417-1491911889:277751..280194 | Clytia hemisphaerica | exon |
| TCONS_00022424-exon-sc0000417-1510915933:277751..280194 | TCONS_00022424-exon-sc0000417-1510915933:277751..280194 | Clytia hemisphaerica | exon |
| TCONS_00022424-exon-sc0000417-1575043694:277751..280194 | TCONS_00022424-exon-sc0000417-1575043694:277751..280194 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000417 | supercontig | sc0000417:277751..280194 + |
Blast
The following BLAST results are available for this feature:
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