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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022412 ID=TCONS_00022412|Name=TCONS_00022412|organism=Clytia hemisphaerica|type=transcript|length=2351bp
ATGAAATCAACCTGCAGATTCTCACAAATACTGACGTGGATAATCATAAT
GTTCATTTTAGGGAGGAATACCCCCCTAAAATGTTCGAAGATGGCAGTAT
GGTCACATTACTCAAGGATCTGGTTGGACGCAATACCAATCTTCCAAACC
ATGATTTGTGTGTTCTCCTTGTCACATTCCGCAAAATGAATGAAGAGATG
ACCAATCATTTCCACCGAATCATAGATTGGAATTTGTACGAAATGAACAA
CAACACCAGTGCTTTAGAATTCGATCAAGAACTACAAACtataaatttgt
tttcaaacaaGCTTTCACTCTTAATCTCCTTGGAGAAGAATTTATTGGAT
GTTTTAGAAATGCGTGCCAAGGGCCAAGGCTTTTATGACAGCATTAAGAA
AAGTGAATTTCCGACCAGGAAAGTTGGGAAGAACCAAACAGGCGAGAACG
TGAAACGTGACTTGATCGATTATTGTGAGTCTTTCGAAGAAGGCCAAAAA
CTACAAGAAGCAGAAAAGCTACTCTCGCAGTTATATGATATGGATCGAAG
AGTCAAGCGCATCGAAGAGAGAATCGGGGATTTTAGAAATGAAACTCAAC
CTGTTGAGCCAGAACATAGGAAGATCGAGAAAGAATTAAAGAAGGCCAAG
AAaccaaagaaacaaagaaaacagaaaaacaagaaaaagaaacatAGAAA
ATTCGAGCCAACGAAACCACTGAATTCCACATGGAGTTACAGTAATGTTA
CATCAGGAAACACCAGTTTCACCAGTGATAACCAAACGATCAAATGGATG
GACAACAATGTCTTCGGGAATTACACCTGGAGCAATGAAACaacaaaact
tcaaaacttttcattAACTGCCTCGAAACTTTTTACTTTGTGGTCTccaa
ttaatgctaccctgaaccAAATAAACCTCAATGATACTCAAATTCTAGTT
AAAGATAAAGCAATGATGAAAAGTGAAGATGGAGCCTTATCTATTGATGG
ATCAGAGATACTTAACAAAGACATTCTAAATAGGAATAAAAATGCAACAG
CGAGAAGTGAAGATGGGGCTTTAGCTGTCAATGGCACAATAAAGATACTT
GATAAAAGACTTCTTGATATTAACAACAATACAGGATTGAGAGGTGAGGA
TGGGGCCTTATATGTTAACGGTACTATAAAAAtacttgaaaaagaaatca
aagcaGCCAAGGATCTGTTACATTCGCTAAATGATGGAAATGGAATTGAA
AATCCTATTCAAGCTGAACACAGGAATTTGACAAGAGAAAACGACAATCA
AACAAATGCTTTCGGCAGTGGTTCTGGCAATTCGGTCCCAACTGATAATG
AGGCTCAAATAGATGTGGGACCGATGGGAAATGATAGCCATTTAGGAAGC
CAAGGAGATAAAAACGCAATCAAACATGGAGACAATAATCCACAAAGAAT
GCAGTCAGATGGTGAGGAAAACATCGAAAACAATACCAACGACATCACAA
ACAGCAACaggacaaataatagaaatgtTCTTGCAAGCCCACAAGAAAAT
ACGAGCCTGAGTGCAGAGTTTCCTAATTTTAATACAAGCAACATGAATGA
TAGCAAGTTGATAAACTCAAATCTGAGCAGTCCAGAAATCCCAGGTGAGA
AAGAAACAGAACAAGTGAACATACAGCAGGGATTACCTTCGGAGAGTGAA
GAGGATGTCGTAAACAACACAACAAGCactgaaaataacaacaacacaGT
CAAAGAAGCCGTCCCAAAGGTTTTACGTACAAAGCCAAGCTCTATTGTCA
ACAGTCTACCCAACTCAATAAAGATACCGTTAAATGAAAGTCCTTTTGAA
AAGTGGAGCACCAAGAATAACCTTTTCTTTGATCACCACCAAATCAAACA
TCATATTCTAACATCGAAAAAAGGAAACACATTTTGGAATAATCATCGAT
CGAAAAAATCGATGACGCCTTTCCTTCGAAATTTTCGAAAGTCTCGAAAG
GGAAGAAAACGAAAAGCTAGAAGTAAAAACGCTACGAAAAGATCCGGTAC
CAAAGgaatgattttcaaaataaggcTCTAATGACAGTAAAACAAGGAGA
TAAAATTCGCGAGATTTCCCCCGAGGCATATTCTTAAGGTACTGTAACCA
CAGAAAGATATCATAGCGTACCGTAGTATGCATGTGatcaatattttggt
aattcttTTGCGGTTTAAAACTATCTAGTTAATTCTAGCATTTTGTATAG
AATATTTACTTGTTAATTTGTATGAAATGTTTGCTTAGTTCCTATCATTT
TCAGAAATCTATAAAGAATATTTCCGTTTGAAATCTGGAAATAGAAGCTG
C Run BLAST on NCBI protein sequence of TCONS_00022412-protein >TCONS_00022412-protein ID=TCONS_00022412-protein|Name=TCONS_00022412-protein|organism=Clytia hemisphaerica|type=polypeptide|length=692bp
EINLQILTNTDVDNHNVHFREEYPPKMFEDGSMVTLLKDLVGRNTNLPNH
DLCVLLVTFRKMNEEMTNHFHRIIDWNLYEMNNNTSALEFDQELQTINLF
SNKLSLLISLEKNLLDVLEMRAKGQGFYDSIKKSEFPTRKVGKNQTGENV
KRDLIDYCESFEEGQKLQEAEKLLSQLYDMDRRVKRIEERIGDFRNETQP
VEPEHRKIEKELKKAKKPKKQRKQKNKKKKHRKFEPTKPLNSTWSYSNVT
SGNTSFTSDNQTIKWMDNNVFGNYTWSNETTKLQNFSLTASKLFTLWSPI
NATLNQINLNDTQILVKDKAMMKSEDGALSIDGSEILNKDILNRNKNATA
RSEDGALAVNGTIKILDKRLLDINNNTGLRGEDGALYVNGTIKILEKEIK
AAKDLLHSLNDGNGIENPIQAEHRNLTRENDNQTNAFGSGSGNSVPTDNE
AQIDVGPMGNDSHLGSQGDKNAIKHGDNNPQRMQSDGEENIENNTNDITN
SNRTNNRNVLASPQENTSLSAEFPNFNTSNMNDSKLINSNLSSPEIPGEK
ETEQVNIQQGLPSESEEDVVNNTTSTENNNNTVKEAVPKVLRTKPSSIVN
SLPNSIKIPLNESPFEKWSTKNNLFFDHHQIKHHILTSKKGNTFWNNHRS
KKSMTPFLRNFRKSRKGRKRKARSKNATKRSGTKGMIFKIRL Run BLAST on NCBI transcript from alignment at sc0000414:118981..121331 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022412 ID=TCONS_00022412|Name=TCONS_00022412|organism=Clytia hemisphaerica|type=transcript|length=2351bp|location=Sequence derived from alignment at sc0000414:118981..121331 (Clytia hemisphaerica)
GCAGCTTCTATTTCCAGATTTCAAACGGAAATATTCTTTATAGATTTCTG
AAAATGATAGGAACTAAGCAAACATTTCATACAAATTAACAAGTAAATAT
TCTATACAAAATGCTAGAATTAACTAGATAGTTTTAAACCGCAAaagaat
taccaaaatattgatCACATGCATACTACGGTACGCTATGATATCTTTCT
GTGGTTACAGTACCTTAAGAATATGCCTCGGGGGAAATCTCGCGAATTTT
ATCTCCTTGTTTTACTGTCATTAGAgccttattttgaaaatcattcCTTT
GGTACCGGATCTTTTCGTAGCGTTTTTACTTCTAGCTTTTCGTTTTCTTC
CCTTTCGAGACTTTCGAAAATTTCGAAGGAAAGGCGTCATCGATTTTTTC
GATCGATGATTATTCCAAAATGTGTTTCCTTTTTTCGATGTTAGAATATG
ATGTTTGATTTGGTGGTGATCAAAGAAAAGGTTATTCTTGGTGCTCCACT
TTTCAAAAGGACTTTCATTTAACGGTATCTTTATTGAGTTGGGTAGACTG
TTGACAATAGAGCTTGGCTTTGTACGTAAAACCTTTGGGACGGCTTCTTT
GACtgtgttgttgttattttcagtGCTTGTTGTGTTGTTTACGACATCCT
CTTCACTCTCCGAAGGTAATCCCTGCTGTATGTTCACTTGTTCTGTTTCT
TTCTCACCTGGGATTTCTGGACTGCTCAGATTTGAGTTTATCAACTTGCT
ATCATTCATGTTGCTTGTATTAAAATTAGGAAACTCTGCACTCAGGCTCG
TATTTTCTTGTGGGCTTGCAAGAacatttctattatttgtcctGTTGCTG
TTTGTGATGTCGTTGGTATTGTTTTCGATGTTTTCCTCACCATCTGACTG
CATTCTTTGTGGATTATTGTCTCCATGTTTGATTGCGTTTTTATCTCCTT
GGCTTCCTAAATGGCTATCATTTCCCATCGGTCCCACATCTATTTGAGCC
TCATTATCAGTTGGGACCGAATTGCCAGAACCACTGCCGAAAGCATTTGT
TTGATTGTCGTTTTCTCTTGTCAAATTCCTGTGTTCAGCTTGAATAGGAT
TTTCAATTCCATTTCCATCATTTAGCGAATGTAACAGATCCTTGGCtgct
ttgatttctttttcaagtaTTTTTATAGTACCGTTAACATATAAGGCCCC
ATCCTCACCTCTCAATCCTGTATTGTTGTTAATATCAAGAAGTCTTTTAT
CAAGTATCTTTATTGTGCCATTGACAGCTAAAGCCCCATCTTCACTTCTC
GCTGTTGCATTTTTATTCCTATTTAGAATGTCTTTGTTAAGTATCTCTGA
TCCATCAATAGATAAGGCTCCATCTTCACTTTTCATCATTGCTTTATCTT
TAACTAGAATTTGAGTATCATTGAGGTTTATTTggttcagggtagcatta
attggAGACCACAAAGTAAAAAGTTTCGAGGCAGTTaatgaaaagttttg
aagttttgttGTTTCATTGCTCCAGGTGTAATTCCCGAAGACATTGTTGT
CCATCCATTTGATCGTTTGGTTATCACTGGTGAAACTGGTGTTTCCTGAT
GTAACATTACTGTAACTCCATGTGGAATTCAGTGGTTTCGTTGGCTCGAA
TTTTCTatgtttctttttcttgtttttctgttttctttgtttctttggtT
TCTTGGCCTTCTTTAATTCTTTCTCGATCTTCCTATGTTCTGGCTCAACA
GGTTGAGTTTCATTTCTAAAATCCCCGATTCTCTCTTCGATGCGCTTGAC
TCTTCGATCCATATCATATAACTGCGAGAGTAGCTTTTCTGCTTCTTGTA
GTTTTTGGCCTTCTTCGAAAGACTCACAATAATCGATCAAGTCACGTTTC
ACGTTCTCGCCTGTTTGGTTCTTCCCAACTTTCCTGGTCGGAAATTCACT
TTTCTTAATGCTGTCATAAAAGCCTTGGCCCTTGGCACGCATTTCTAAAA
CATCCAATAAATTCTTCTCCAAGGAGATTAAGAGTGAAAGCttgtttgaa
aacaaatttataGTTTGTAGTTCTTGATCGAATTCTAAAGCACTGGTGTT
GTTGTTCATTTCGTACAAATTCCAATCTATGATTCGGTGGAAATGATTGG
TCATCTCTTCATTCATTTTGCGGAATGTGACAAGGAGAACACACAAATCA
TGGTTTGGAAGATTGGTATTGCGTCCAACCAGATCCTTGAGTAATGTGAC
CATACTGCCATCTTCGAACATTTTAGGGGGGTATTCCTCCCTAAAATGAA
CATTATGATTATCCACGTCAGTATTTGTGAGAATCTGCAGGTTGATTTCA
T Coding sequence (CDS) from alignment at sc0000414:118981..121331 >TCONS_00022412 ID=TCONS_00022412|Name=TCONS_00022412|organism=Clytia hemisphaerica|type=CDS|length=2079bp|location=Sequence derived from alignment at sc0000414:118981..121331 (Clytia hemisphaerica)
TTAGAgccttattttgaaaatcattcCTTTGGTACCGGATCTTTTCGTAG
CGTTTTTACTTCTAGCTTTTCGTTTTCTTCCCTTTCGAGACTTTCGAAAA
TTTCGAAGGAAAGGCGTCATCGATTTTTTCGATCGATGATTATTCCAAAA
TGTGTTTCCTTTTTTCGATGTTAGAATATGATGTTTGATTTGGTGGTGAT
CAAAGAAAAGGTTATTCTTGGTGCTCCACTTTTCAAAAGGACTTTCATTT
AACGGTATCTTTATTGAGTTGGGTAGACTGTTGACAATAGAGCTTGGCTT
TGTACGTAAAACCTTTGGGACGGCTTCTTTGACtgtgttgttgttatttt
cagtGCTTGTTGTGTTGTTTACGACATCCTCTTCACTCTCCGAAGGTAAT
CCCTGCTGTATGTTCACTTGTTCTGTTTCTTTCTCACCTGGGATTTCTGG
ACTGCTCAGATTTGAGTTTATCAACTTGCTATCATTCATGTTGCTTGTAT
TAAAATTAGGAAACTCTGCACTCAGGCTCGTATTTTCTTGTGGGCTTGCA
AGAacatttctattatttgtcctGTTGCTGTTTGTGATGTCGTTGGTATT
GTTTTCGATGTTTTCCTCACCATCTGACTGCATTCTTTGTGGATTATTGT
CTCCATGTTTGATTGCGTTTTTATCTCCTTGGCTTCCTAAATGGCTATCA
TTTCCCATCGGTCCCACATCTATTTGAGCCTCATTATCAGTTGGGACCGA
ATTGCCAGAACCACTGCCGAAAGCATTTGTTTGATTGTCGTTTTCTCTTG
TCAAATTCCTGTGTTCAGCTTGAATAGGATTTTCAATTCCATTTCCATCA
TTTAGCGAATGTAACAGATCCTTGGCtgctttgatttctttttcaagtaT
TTTTATAGTACCGTTAACATATAAGGCCCCATCCTCACCTCTCAATCCTG
TATTGTTGTTAATATCAAGAAGTCTTTTATCAAGTATCTTTATTGTGCCA
TTGACAGCTAAAGCCCCATCTTCACTTCTCGCTGTTGCATTTTTATTCCT
ATTTAGAATGTCTTTGTTAAGTATCTCTGATCCATCAATAGATAAGGCTC
CATCTTCACTTTTCATCATTGCTTTATCTTTAACTAGAATTTGAGTATCA
TTGAGGTTTATTTggttcagggtagcattaattggAGACCACAAAGTAAA
AAGTTTCGAGGCAGTTaatgaaaagttttgaagttttgttGTTTCATTGC
TCCAGGTGTAATTCCCGAAGACATTGTTGTCCATCCATTTGATCGTTTGG
TTATCACTGGTGAAACTGGTGTTTCCTGATGTAACATTACTGTAACTCCA
TGTGGAATTCAGTGGTTTCGTTGGCTCGAATTTTCTatgtttctttttct
tgtttttctgttttctttgtttctttggtTTCTTGGCCTTCTTTAATTCT
TTCTCGATCTTCCTATGTTCTGGCTCAACAGGTTGAGTTTCATTTCTAAA
ATCCCCGATTCTCTCTTCGATGCGCTTGACTCTTCGATCCATATCATATA
ACTGCGAGAGTAGCTTTTCTGCTTCTTGTAGTTTTTGGCCTTCTTCGAAA
GACTCACAATAATCGATCAAGTCACGTTTCACGTTCTCGCCTGTTTGGTT
CTTCCCAACTTTCCTGGTCGGAAATTCACTTTTCTTAATGCTGTCATAAA
AGCCTTGGCCCTTGGCACGCATTTCTAAAACATCCAATAAATTCTTCTCC
AAGGAGATTAAGAGTGAAAGCttgtttgaaaacaaatttataGTTTGTAG
TTCTTGATCGAATTCTAAAGCACTGGTGTTGTTGTTCATTTCGTACAAAT
TCCAATCTATGATTCGGTGGAAATGATTGGTCATCTCTTCATTCATTTTG
CGGAATGTGACAAGGAGAACACACAAATCATGGTTTGGAAGATTGGTATT
GCGTCCAACCAGATCCTTGAGTAATGTGACCATACTGCCATCTTCGAACA
TTTTAGGGGGGTATTCCTCCCTAAAATGAACATTATGATTATCCACGTCA
GTATTTGTGAGAATCTGCAGGTTGATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022412-exon-sc0000414-1491911889:118981..121331 | TCONS_00022412-exon-sc0000414-1491911889:118981..121331 | Clytia hemisphaerica | exon |
| TCONS_00022412-exon-sc0000414-1510915933:118981..121331 | TCONS_00022412-exon-sc0000414-1510915933:118981..121331 | Clytia hemisphaerica | exon |
| TCONS_00022412-exon-sc0000414-1575043694:118981..121331 | TCONS_00022412-exon-sc0000414-1575043694:118981..121331 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000414 | supercontig | sc0000414:118981..121331 . |
Blast
The following BLAST results are available for this feature:
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