TCONS_00022410 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022410
Unique NameTCONS_00022410
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length287

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022410 ID=TCONS_00022410|Name=TCONS_00022410|organism=Clytia hemisphaerica|type=transcript|length=287bp
agcttagaatttcttttgatatattttataaaagaaatcaaaagacttta
acgaccaattaccgacacattcaactcctgttttctttatacctctatgg
ttaTTGTTTCTGAAAGAATATTATAGAGCAAAATTTCCATCTATTTCTTA
ATATTATTAGACGTACTTTATTATCAACATGAAATATAAATTATCAAAGT
ACTGTTTTCAAATACAATCCATTTGTTGTAAGATCTTCCATTCAGGATCC
CTGTTTTTACACGGTAGTAATTTGGTGTGTGTCGAAA
Run BLAST on NCBI

transcript from alignment at sc0000414:68922..69208

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022410 ID=TCONS_00022410|Name=TCONS_00022410|organism=Clytia hemisphaerica|type=transcript|length=287bp|location=Sequence derived from alignment at sc0000414:68922..69208 (Clytia hemisphaerica)
TTTCGACACACACCAAATTACTACCGTGTAAAAACAGGGATCCTGAATGG
AAGATCTTACAACAAATGGATTGTATTTGAAAACAGTACTTTGATAATTT
ATATTTCATGTTGATAATAAAGTACGTCTAATAATATTAAGAAATAGATG
GAAATTTTGCTCTATAATATTCTTTCAGAAACAAtaaccatagaggtata
aagaaaacaggagttgaatgtgtcggtaattggtcgttaaagtcttttga
tttcttttataaaatatatcaaaagaaattctaagct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012567XLOC_012567Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022410-exon-sc0000414-1491911889:68922..69208TCONS_00022410-exon-sc0000414-1491911889:68922..69208Clytia hemisphaericaexon
TCONS_00022410-exon-sc0000414-1510915933:68922..69208TCONS_00022410-exon-sc0000414-1510915933:68922..69208Clytia hemisphaericaexon
TCONS_00022410-exon-sc0000414-1575043694:68922..69208TCONS_00022410-exon-sc0000414-1575043694:68922..69208Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000414supercontigsc0000414:68922..69208 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.36681	8.42394	5.80288	6.17393	4.85984	5.12381	8.91591	8.74127	7.63134	7.61106	16.6732	5.3021	5.5674	8.56059	17.3563	25.3703	11.8854	10.8494	2.63664	1.09712	15.1292	21.9181	11.3992	12.5049	3.8116	5.34805	10.6143	9.04894	29.6362	28.372
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022410 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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