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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022405 ID=TCONS_00022405|Name=TCONS_00022405|organism=Clytia hemisphaerica|type=transcript|length=3116bpRun BLAST on NCBI protein sequence of TCONS_00022405-protein >TCONS_00022405-protein ID=TCONS_00022405-protein|Name=TCONS_00022405-protein|organism=Clytia hemisphaerica|type=polypeptide|length=436bp MSDNKESKVSQLFKNLEYGPAPESPKIAYEWLDSHERKFGHFINGKWVNPRun BLAST on NCBI transcript from alignment at sc0000414:256432..272520- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022405 ID=TCONS_00022405|Name=TCONS_00022405|organism=Clytia hemisphaerica|type=transcript|length=16089bp|location=Sequence derived from alignment at sc0000414:256432..272520- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000414:256432..272520- >TCONS_00022405 ID=TCONS_00022405|Name=TCONS_00022405|organism=Clytia hemisphaerica|type=CDS|length=9177bp|location=Sequence derived from alignment at sc0000414:256432..272520- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022405 vs. Swiss-Prot (Human)
Match: A16A1 (Aldehyde dehydrogenase family 16 member A1 OS=Homo sapiens GN=ALDH16A1 PE=1 SV=2) HSP 1 Score: 325.479 bits (833), Expect = 5.227e-153 Identity = 178/418 (42.58%), Postives = 258/418 (61.72%), Query Frame = 3
Query: 87 KVSQLFKNLEYGPAPESPKIAYEWLDSHERKFGHFINGKWVNPEGRKTVECKSPATGEVLASTIQGTVDDLNEGVQAARTAYNSWSKLPCHVRARYIYSIARHVQKHMRLISVVESLDNGKPIRETRDFDIPTVARHLYHHAGWAELMETEMKEWTSIGVVGAIVPWNFPLMLLCWKVCPALAMGNTVV--LKPASFTRLSALLFADICAEAGLPPGVFNILTGDGRFGSAIAVHHDVDKVGFTGSTEVGKILRRVTAGTGKKISLELGGKSPVVVFDSADLDSAVEGIVMAIWFNQGQVCSAGSRLLVQETVHDKLVNKLKERMKHLRVGNSLDKCVDMGAIIDEGQRKSVEQFVEEARAEGAEIYQASECIPDGCFYPPTLVTNVSTTSKIVIEEVFGPVLVVLPFRTAKEAINLA 1334
+ ++F +LEYGP PES A WLD+ +R GH++NGKW+ PE R +V C+ P TGE LAS +Q +D+ V+AAR A+ WS P VRA+++ +A +QKH RL+ +ESL G+ +RE RD D+ + L++HA A E + W +GV+G I+P F + + W++CPALA+G TVV + PAS + LL A + E G PG+ N+L+G +A + KV F G+ E G+ LRR AG ++ L LG +S +++ D+AD+DSAVEG+V A W ++G G RLL+QE+V D+ + +L+ERM LR G LD VDMGA V++FV EA+++GA+++QA + + FYPPTLV+N+ S EV PV+V PFRTAKEA+ +A
Sbjct: 9 RAREIFTSLEYGPVPESHACALAWLDTQDRCLGHYVNGKWLKPEHRNSVPCQDPITGENLASCLQAQAEDVAAAVEAARMAFKGWSAHPGVVRAQHLTRLAEVIQKHQRLLWTLESLVTGRAVREVRDGDVQLAQQLLHYHAIQASTQEEALAGWEPMGVIGLILPPTFSFLEMMWRICPALAVGCTVVALVPPAS---PAPLLLAQLAGELGPFPGILNVLSGPASLVPILASQPGIRKVAFCGAPEEGRALRRSLAGECAELGLALGTESLLLLTDTADVDSAVEGVVDAAWSDRG---PGGLRLLIQESVWDEAMRRLQERMGRLRSGRGLDGAVDMGA-RGAAACDLVQRFVREAQSQGAQVFQAGDVPSERPFYPPTLVSNLPPASPCAQVEVPWPVVVASPFRTAKEALLVA 419 HSP 2 Score: 142.51 bits (358), Expect = 5.227e-153 Identity = 96/267 (35.96%), Postives = 136/267 (50.94%), Query Frame = 2
Query: 1451 KEXL--ANNTLYGLGGSVWSEHIGLAMEVASNIKAGSVWINNHNVFDAAAGFGGYKESGYGRDGGKEGLYEYVKPKWC-ASVCIDASKFDVNAFGPAKFPAVSNPNTAPLASDGQNTPKIDRTYKLYIGGKQKRPDANYSRPITDPKGQIIAQVGESNRKDVRDAVDIACKTLPGWQKRSGHNRAQITYYIAENLEQRKEEFIKTLVESCACSREDAVKEVEESIHRLFHWAAYADKYGGNVQETQHYGTVLRLHDSVGVVGIACPE 2242
KE L AN T G SVWSE +G A+E+ ++ G+VWIN H + D + GG KESG GG +GLYEY++P A + + + + FG ++ P+T P + +P Y L++GG+ + P A SRPI D G + V E KD+R AV+ A + PGW +S RA + + +A LE+RK L E + A EVE S RL W A G +Q G VLRL + +GV+ + CP+
Sbjct: 413 KEALLVANGTPRGGSASVWSERLGQALELGYGLQVGTVWINAHGLRDPSVPTGGCKESGCSWHGGPDGLYEYLRPSGTPARLSCLSKNLNYDTFG------LAVPSTLPAGPEIGPSPA--PPYGLFVGGRFQAPGARSSRPIRDSSGNLHGYVAEGGAKDIRGAVEAAHQAFPGWAGQSPGARAALLWALAAALERRKSTLASRL-ERQGAELKAAEAEVELSARRLRAWGARVQAQGHTLQVAGLRGPVLRLREPLGVLAVVCPD 670 HSP 3 Score: 116.316 bits (290), Expect = 5.227e-153 Identity = 54/112 (48.21%), Postives = 71/112 (63.39%), Query Frame = 1
Query: 2242 MLIIPSEKYPLPALQLYQIFETSDVPAGTINVLTGSRDHMTRILTEHQNVNAMWYFGSQEGSKFVEHTSAVNIKRTWVNYGQPRDWFDRQQGYGEEFLIRSVEVKNVWIPMG 2577
++++PS PL AL++ Q T PAG NV+TG RDH+TR L HQ+V AMWYFGS +GS+FVE SA N+K W + G PR W +G G E +R K +W+PMG
Sbjct: 691 VVMVPSAACPLLALEVCQDMATV-FPAGLANVVTGDRDHLTRCLALHQDVQAMWYFGSAQGSQFVEWASAGNLKPVWASRGCPRAWDQEAEGAGPELGLRVARTKALWLPMG 801 The following BLAST results are available for this feature:
BLAST of TCONS_00022405 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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