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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022378 ID=TCONS_00022378|Name=TCONS_00022378|organism=Clytia hemisphaerica|type=transcript|length=619bp
ATTACATGTTATCAATTTTCCGTTTAGTATATAGAAATAACTAAAATATT
ACCGAGATGactcaaatttgcccaaattgcAAAAAAGCTGTTTATTTTGC
TGAGAAGGTATCATCCCTTGGCAAGCATTGGCATCGTGGATGTTTAAGAT
GTAAGAAATGCAACAAGACTTTGACTGCAGGTGGACATGCTGAGCACGAG
GGGACACCTTACTGCCATGTACCATGCTACAGTTCTTTGTATGGTCCAGG
AGGTTTCGGTCACGGTGGAGCAGAATCACATGACTACTCCAAAGAACGAG
ATCCTAACACCATCATGAAGTAAAATGGAAAATGActtcttcttcgaaaa
actaagATTTCAATTTATACATTTAAAGGATTTGTAAAcacaggaacttt
ctaaaaggCAGACTTGAATTGAATTTGTGCCTAAAGCAAAGTCACTCAAA
TCTATCTGCTGGCTTACTCAAGAAAGATTTTCAGTGATCCTTTGTGTACC
TAAAAAGTTAgatttatttattctttttagCTCCCTTATAAAACCTTTTT
GTGAATATATGCAacatcgtcagtaaataataaATCTTCAATATTATCGT
AAATAGAGTAGAAAGCAAC Run BLAST on NCBI transcript from alignment at sc0000414:188072..191693+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022378 ID=TCONS_00022378|Name=TCONS_00022378|organism=Clytia hemisphaerica|type=transcript|length=3622bp|location=Sequence derived from alignment at sc0000414:188072..191693+ (Clytia hemisphaerica)
ATTACATGTTATCAATTTTCCGTTTAGTATATGTAAGTATTTTCTGGTTT
ACACGATCTCTGATCATCTAAATGATTTCACCATTGcgaatgaatatttt
tggacctaccccggtggggtggaggtcctataaattaacccatgttcgtt
cgttcgttagtgtgttagttaccagcttttctcgagattggcNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNgctttcattttctttatttttttgtattttgaccagtt
atgtcttatgtgtttcattgtttcaatgttcactgattagtttgataacc
aggtaggtccaaaaaagtatcgcttgttggATTTGTGGTAAGTTTTGTTC
GGTATTTATTAAACTAAAGCGTTTTTTTAGTATTTCTAATTCCCAGGCCA
GCTAGAGCAATCTACTTGATTATGtttaaatgaatgaatgaaagaaatcg
tggaaatgacgtcataattatcTAATTACAAACCGATTTGAAAAGTTGAC
AACCGCACtcgtaaaataatttttttgtaacacATCTTTATTGGCTATAA
TCGTCTTATCTAACTTGTTTCTCATCTGCTTGAAGAGGCTAAACAGCTTG
TATTGTTTGACATGTGTACAAAACGGACATACTATATCTATCCTCCAACT
GCTCGACAAACATAAGGCTCTCGAGATTTCGAATAACACGCCATGTTTGT
AGGAAGCAGGAACGCTGCGTATAAATACAGCCTTTTTGTGACGGTTAATG
AGTTTTTTTATGGTCGTGTTGTGAAGGGGTTTATTTATGTGTTACCTTTT
ATGGCTTTTCattcgtttgttttgaaagttgtcTGAGAGGAGACTAGAGA
TCACAAGCTTGTTGActtttaaatgataaattttacaaCTTGTCTACAAT
AAATGGATGTGAATTCGATTATTGATTTACTATGTTTAAAATTTATATTC
TGttgtacattttttttacaGAGAAATAACTAAAATATTACCGAGATGac
tcaaatttgcccaaattgcAAAAAAGCTGTTTATTTTGGTatgttttaac
aattttgttttttttcatcctTTTGTACTACCTGGCCCCCGTTCACTACA
TTGAGGCTTCAAGATTCCGAGGGTGTTGACCTGCTTCTAAtggatacatg
ttttttataagaataatgttTATAAGCACACTGAACCCTggatttgatga
aaaagttaGCTTATCAGTGAGCTTTGGTCATTGGTCactgttaaaggttt
tgtaCTTGGGAAGGttcgtttttcttttctattttaaattacctaatttt
ttttcggaaaaaaaaacatatcacAACAAACATATTGAGCTTGACTGAAC
CTGGTATCCcaaaaattattcttttaaaaaaacatgtCTGAGTAACCGCC
TAATAAACAGAATGGTAAATTACGTTGCTCAAATACCTAAAGCAGTGTAC
ACATTAGATTGAATCGCGAGTACTCATTTGACCTAACTTCATTTAGATCT
TTTTGAAACGAGAGACTTATAAAAATAGAGTCAAAAACAGATCAATATCA
GTATTTGAGGAATTTTGATCTGCTTGACTAGACCTTTTGATTGGATGTCA
CTTCGCAAATGaactttattttcattgttgAGACTTGACAATATAAAATG
ATGACATTGAAGTGTTCCATTTACAACTCGATTTACTTACAAGCTACAGA
AGTAGAAATACCAATTTTACATGGCACTCTCTTCCTGATTCTTATTTCAA
TGGTTGAGAAGGAGGTGCAATAGGTGCTCTATTAGTGACCTAGATCCCTA
AAGCGTGTCTCTTAACGACACTTGTAAGCAATATATCAGTGGCATTAAAG
TCGGATAGGTCGATGAGACAAACCCAATTAGCTTTTTTTTAATGTGTCAT
GAACTTAGCCATGTGCTAATTCATGATTAGCAAAGCATATACCAAGACAT
TTGTGATGTTAATTAGTTTGTTAATGCCTACGCTAATTTAATtgtcgaga
aaaaaaatatcaagacATAAGCTTGGTTTAAACGCAGTTGGTTTTGATAT
GACGAgatatagactggagtcgtttataatgcgtgtaatacagtagtata
ggtgttatatgataatacaattaatgttacgggatttagtttgtataaac
gactagaagaatccggtgttccggcCTTATAGAAACCCGGACTTACTAAA
GTTAATACGCTGTAATCGACGCGAGATACATTCTAGTTCTTTCGTGTAAT
TAAACTGTTTTTATTCACTCATGATCATTTAACTGATTATTTTTTCAGCT
GAGAAGGTATCATCCCTTGGCAAGCATTGGCATCGTGGATGTTTAAGATG
TAAGAAATGCAACAAGACTTTGACTGCAGGTGGACATGCTGAGGTATGCA
TATTTTTTAGTAAGGGTTTTGCTTTGTTTCAAGTTTTTCTTATTATCATC
ATTATTTTGCCGACAAGGGCTGGTGTTACTCtcaaaagttgaatatcttC
AGTTTGCAAACAATAAAAAGTCTCTGCCTTGTTCggctttaattttattt
tgtttctgaTTTCTCTTTTCGCCAAATTAGATATAATCCAGAATTGATCC
ACCTTTTAGGCGGGGATGTTTATTGTTGTCTAATCTTCTGTTTTCAGCAC
GAGGGGACACCTTACTGCCATGTACCATGCTACAGTTCTTTGTATGGTCC
AGGAGGTTTCGGTCACGGTGGAGCAGAATCACATGACTACTCCAAAGAAC
GAGATCCTAACACCATCATGAAGTAAAATGGAAAATGActtcttcttcga
aaaactaagATTTCAATTTATACATTTAAAGGATTTGTAAAcacaggaac
tttctaaaaggCAGACTTGAATTGAATTTGTGCCTAAAGCAAAGTCACTC
AAATCTATCTGCTGGCTTACTCAAGAAAGATTTTCAGTGATCCTTTGTGT
ACCTAAAAAGTTAgatttatttattctttttagCTCCCTTATAAAACCTT
TTTGTGAATATATGCAacatcgtcagtaaataataaATCTTCAATATTAT
CGTAAATAGAGTAGAAAGCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022378-exon-sc0000414-1491911889:188072..188103 | TCONS_00022378-exon-sc0000414-1491911889:188072..188103 | Clytia hemisphaerica | exon |
| TCONS_00022378-exon-sc0000414-1510915933:188072..188103 | TCONS_00022378-exon-sc0000414-1510915933:188072..188103 | Clytia hemisphaerica | exon |
| TCONS_00022378-exon-sc0000414-1575043694:188072..188103 | TCONS_00022378-exon-sc0000414-1575043694:188072..188103 | Clytia hemisphaerica | exon |
| TCONS_00022378-exon-sc0000414-1491911889:189593..189659 | TCONS_00022378-exon-sc0000414-1491911889:189593..189659 | Clytia hemisphaerica | exon |
| TCONS_00022378-exon-sc0000414-1510915933:189593..189659 | TCONS_00022378-exon-sc0000414-1510915933:189593..189659 | Clytia hemisphaerica | exon |
| TCONS_00022378-exon-sc0000414-1575043694:189593..189659 | TCONS_00022378-exon-sc0000414-1575043694:189593..189659 | Clytia hemisphaerica | exon |
| TCONS_00022378-exon-sc0000414-1491911889:190920..191014 | TCONS_00022378-exon-sc0000414-1491911889:190920..191014 | Clytia hemisphaerica | exon |
| TCONS_00022378-exon-sc0000414-1510915933:190920..191014 | TCONS_00022378-exon-sc0000414-1510915933:190920..191014 | Clytia hemisphaerica | exon |
| TCONS_00022378-exon-sc0000414-1575043694:190920..191014 | TCONS_00022378-exon-sc0000414-1575043694:190920..191014 | Clytia hemisphaerica | exon |
| TCONS_00022378-exon-sc0000414-1491911889:191269..191693 | TCONS_00022378-exon-sc0000414-1491911889:191269..191693 | Clytia hemisphaerica | exon |
| TCONS_00022378-exon-sc0000414-1510915933:191269..191693 | TCONS_00022378-exon-sc0000414-1510915933:191269..191693 | Clytia hemisphaerica | exon |
| TCONS_00022378-exon-sc0000414-1575043694:191269..191693 | TCONS_00022378-exon-sc0000414-1575043694:191269..191693 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000414 | supercontig | sc0000414:188072..191693 + |
Blast
BLAST of TCONS_00022378 vs. Swiss-Prot (Human)
Match: CRIP1 (Cysteine-rich protein 1 OS=Homo sapiens GN=CRIP1 PE=1 SV=3) HSP 1 Score: 113.62 bits (283), Expect = 5.726e-32 Identity = 51/73 (69.86%), Postives = 62/73 (84.93%), Query Frame = 3
Query: 69 CPNCKKAVYFAEKVSSLGKHWHRGCLRCKKCNKTLTAGGHAEHEGTPYCHVPCYSSLYGPGGFGHGGAESHDY 287
CP C K VYFAE+V+SLGK WHR CL+C+KC KTLT+GGHAEHEG PYC+ PCY++++GP GFG GGAESH +
Sbjct: 4 CPKCNKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYAAMFGPKGFGRGGAESHTF 76
The following BLAST results are available for this feature:
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