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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022376 ID=TCONS_00022376|Name=TCONS_00022376|organism=Clytia hemisphaerica|type=transcript|length=2205bpRun BLAST on NCBI protein sequence of TCONS_00022376-protein >TCONS_00022376-protein ID=TCONS_00022376-protein|Name=TCONS_00022376-protein|organism=Clytia hemisphaerica|type=polypeptide|length=421bp QGSVTALLTKKDETNSKKRYCTDFDLGYVMERNVDELSGGELQRFACAVVRun BLAST on NCBI transcript from alignment at sc0000414:183979..191693+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022376 ID=TCONS_00022376|Name=TCONS_00022376|organism=Clytia hemisphaerica|type=transcript|length=7715bp|location=Sequence derived from alignment at sc0000414:183979..191693+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000414:183979..191693+ >TCONS_00022376 ID=TCONS_00022376|Name=TCONS_00022376|organism=Clytia hemisphaerica|type=CDS|length=11394bp|location=Sequence derived from alignment at sc0000414:183979..191693+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022376 vs. Swiss-Prot (Human)
Match: ABCE1 (ATP-binding cassette sub-family E member 1 OS=Homo sapiens GN=ABCE1 PE=1 SV=1) HSP 1 Score: 681.789 bits (1758), Expect = 0.000e+0 Identity = 318/418 (76.08%), Postives = 364/418 (87.08%), Query Frame = 3
Query: 3 QGSVTALLTKKDETNSKKRYCTDFDLGYVMERNVDELSGGELQRFACAVVCVQNADVYMFDEPSSYLDVKQRLKAALAIRSLTQENKYIIVVEHDLSVLDYLSDFICCLYGTPGAYGVVTMPFTVREGINIFLDGFVPTENLRFREESLTFKVSESAEDEEIKRMRRYSYPDMEKTLKSFHLAVKKGDFTDSEIIVMLGENGTGKTTFIRMMAGILKPDNDENVPQLNVSYKPQKISPKSQGTVRMLMHAKIRDAYIHPQFITDVMKPLKIENIFDQEVQNLSGGELQRVALTLCLGKPADVYLIDEPSAYLDSEQRLHAAKVIKRFILHAKKTGFIVEHDFIMATYLADRVIVFEGQPSVDTTANSPQSLLTGMNKFLESLEITFRRDPANFRPRINKLNSVKDAEQKKTGNFFFMD 1256
+G+V ++L +KDET ++ C DL ++ ERNV++LSGGELQRFACAVVC+Q AD++MFDEPSSYLDVKQRLKAA+ IRSL ++YIIVVEHDLSVLDYLSDFICCLYG P AYGVVTMPF+VREGINIFLDG+VPTENLRFR+ SL FKV+E+A +EE+K+M Y YP M+K + F LA+ G+FTDSEI+VMLGENGTGKTTFIRM+AG LKPD VP LNVSYKPQKISPKS G+VR L+H KIRDAY HPQF+TDVMKPL+IENI DQEVQ LSGGELQRVAL LCLGKPADVYLIDEPSAYLDSEQRL AA+V+KRFILHAKKT F+VEHDFIMATYLADRVIVF+G PS +T ANSPQ+LL GMNKFL LEITFRRDP N+RPRINKLNS+KD EQKK+GN+FF+D
Sbjct: 181 KGTVGSILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVTMPFSVREGINIFLDGYVPTENLRFRDASLVFKVAETANEEEVKKMCMYKYPGMKKKMGEFELAIVAGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPDEGGEVPVLNVSYKPQKISPKSTGSVRQLLHEKIRDAYTHPQFVTDVMKPLQIENIIDQEVQTLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRLMAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSPQTLLAGMNKFLSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNYFFLD 598 HSP 2 Score: 93.9745 bits (232), Expect = 8.463e-20 Identity = 67/218 (30.73%), Postives = 110/218 (50.46%), Query Frame = 3
Query: 576 SEIIVMLGENGTGKTTFIRMMAGILKPDNDENVPQLNVSYKPQKISPKSQGTVRMLMHAKIRD----AYIHPQFITDVMKPLK--IENIFDQE----------------------VQNLSGGELQRVALTLCLGKPADVYLIDEPSAYLDSEQRLHAAKVIKRFILHAKKTGFIVEHDFIMATYLADRVIVFEGQPSVDTTANSPQSLLTGMNKFLES 1145
E++ ++G NG GK+T ++++AG KP N+ + + Q+I +G+ KI + A I PQ++ + K K + +I D++ V++LSGGELQR A + + AD+++ DEPS+YLD +QRL AA I R +++ + +VEHD + YL+D + G PS P S+ G+N FL+
Sbjct: 103 GEVLGLVGTNGIGKSTALKILAGKQKP----NLGKYDDPPDWQEILTYFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAAKGTVGSILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMFDEPSSYLDVKQRLKAAITI-RSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVTMPFSVREGINIFLDG 315 The following BLAST results are available for this feature:
BLAST of TCONS_00022376 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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