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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022365 ID=TCONS_00022365|Name=TCONS_00022365|organism=Clytia hemisphaerica|type=transcript|length=1246bp
ccacatccgtgtcaattcaaaaagcttgtaaattaaaattgacgagtaag
caaacgatatcactcttatcaAAAAAGCCTTTAAAGTGCATGAGAACTCA
AAAACCTTGACTaaagaaattttcttcgaaattAAACAACTAAACTTGTG
CTTTTTAGTACTGAAGGCTTTTAATCAAGGAAGTTTGTTTCTTCTATACA
GCTGCAATGCCTGCTTTGAATTTCGCCAATCATTGTCACCAACGTCGTTC
AGCATGGTACGCTAAATACCAATACCTCGAATGTCCCTCCATGGAAGACG
ATATCAGATATTGTCAAGTCAATGGAGTCAAGATTCTCTTAGACATTGGA
GGATTGGGCTATCATATCATTTTCAGCTCGCGAACTGAAGCGTTGGAGTT
CTCAAAACAGATTTGGTTTGCTTTTCTTGGGAACTGGCGTTACTCAACCA
GAACCTTCGGGCAaGACATCATCTTGGATGGAATCAACTTGTCATTACAT
TCGAGCGCCAATCCCTTTATGAGCGATTTTCTTCACGACCTTCGTGATCG
AATGGAAAATGATTGGAAAAAGACCTACCTGATAACCGCCTCACCACCGT
GTTACAAAGAATCTTACTCTTTCTTTCAAACCTACTCAAAAGTTTTCGAT
CGAATCTTCATCGACTTTACCCTCCATCGGAGATGTGAATATAAAGGTCC
ATCGAGTGGCCAATCAAAAGTGGATTTCCTCCTGGACACTGATTGGTTCA
CTAGAGATACACGACCGGAGCTGAGATCGTTTTGGTTCGTATTATCGGCA
TCATCGTTTACCAAAGGTCTTTATCTGACAAGAGGAGAGATTGACGAATT
AGTGAAAAAGAGTAAACACCGGAAGATCACATTGAAAGGGATTGTTTTGA
ACGAAGCGAGTTTTGATGCACACAACATGGACAATGGAGAGACATTAAGT
ATGACGATCTATCGCGTGATGGGTGGAAGCCTCCAACAGGCCAAACAATC
AatcgaaaatatcaaaaagaaaaaggaaggaCCACCAGTTTGTAAAGCCG
GATCCCTTTGTCTTAGAGACAGAAATGCATCGTCCAAGATTTCACCACCT
TACTTTACGATTTTAATTGCGAGCATTGTATTTATGATGTTTATTTTCAT
GTAAAtagttagcctggatatccagactgtATGTAAACTAAAGTCTGTTC
GCTTTAAATGTGCactaatttttgttttgcttccTATATTTCAACG Run BLAST on NCBI transcript from alignment at sc0000414:15008..19564+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022365 ID=TCONS_00022365|Name=TCONS_00022365|organism=Clytia hemisphaerica|type=transcript|length=4557bp|location=Sequence derived from alignment at sc0000414:15008..19564+ (Clytia hemisphaerica)
ccacatccgtgtcaattcaaaaagcttgtaaattaaaattgacgagtaag
caaacgatatcactcttatcaAAAAAGCCTTTAAAGTGCATGAGAACTCA
AAAACCTTGACTaaagaaattttcttcgaaattAAACAACTAAACTTGTG
CTTTTTAGTACTGAAGGCTTTTAATCAAGGAAGTTTGTTTCTTCTATACA
GCTGCAATGCCTGCTTTGAATTTCGCCAATCATTGTCACCAACGTCGTTC
AGCATGGTACGCTAAATACCAATACCTCGAATGTCCCTCCATGGAAGACG
ATATCAGATATTGTCAAGTCAATGGAGTCAAGATTCTCTTAGACATTGGA
GGATTGGGCTATCATATCATTTTCAGCTCGCGAACTGAAGCGTTGGAGTT
CTCAAAACAGATTTGGTTTGCTTTTCTTGGGAACTGGCGTTACTCAACCA
GAACCTTCGGGCAGTAAGTTCTTTTCGTTTTTAGAAATAAAAttggattt
atttatttaatgatactcttaccattttattttatttatactaATGTTTT
TCCATTTTGTACGTGCcattttttgcataaattacTGAAATTCACCACCC
taactgattttttttaattccagaGACATCATCTTGGATGGAATCAACTT
GTCATTACATTCGAGCGCCAATCCCTTTATGAGCGATTTTCTTCACGACC
TTCGTGATCGAATGGAAAATGATTGGAAAAAGACCTACCTGATAACCGCC
TCACCACCGTGTTACAAAGAATCTTACTCTTTCTTTCAAACCTACTCAAA
AGTTTTCGATCGAATCTTCATCGACTTTACCCTCCATCGGAGATGTGAAT
ATAAAGGTCCATCGAGTGGCCAATCAAAAGTGGATTTCCTCCTGGACACT
GATTGGTTCACTAGAGATACACGACCGGAGCTGAGATCGTTTTGGTTCGT
ATTATCGGCATCATCGTTTACCAAAGGTCTTTATCTGACAAGAGGAGAGA
TTGACGAATTAGTGGTGAGTGGgtcttttcaaaattcaaaaaaaacattt
aaaaacatGATGCTAAAATTCTACGAGCAGGGGGTCGGGGTAAAACCAAT
CAGCTGCGGCCAGTAATAACCTGGGAAAATTATGACagtattgaaatatt
ttgacgTTTCTAAAGTAACTGCAAATGCTTTAACTGTCAAACTTGTCTTG
TTGTCTCGAAGCCAGTTGGGGAAAGAACCATAGTCCCAAGGGTAAGACAG
AGAATTGGATTGGAACAGATttgaaactaaaaaattaaaaagagaaatct
aaaaatgtcaCTTGATGATTTTGGAAATAGTAGAAAAATTCTTCTCcctc
taattttgattttataaaaattttcaatctttcaaaCCCTTCAAATAATT
CACTTCGAGagtatctttccaacggtgtataactttTAACATTGTTCTAA
AGAAATTGTTCAAAAAGTAAAGTGTTCACTTACCTTTGAGACGGACTTTA
GTAGATATTTTGATTTGGGTGGGGTTTATTGGCTTCGATCTTAGCCTGTT
TGGAACGTAAAtgtaagtctaatgttaaatgTCAGTGTTATAACTCACAT
TCCCAAAGCTTGTCAATAAAGGATTTAaaaatcgtttgtggtttttAAAA
GTTTGCAGATAATTCTACTTTTGTCTCGGATATTACGGCCATGATTGTAG
TCTAGGTAATTAAGCAtacgtaaaaaaaaaattatctgtAGAAAAAGAGT
AAACACCGGAAGATCACATTGAAAGGGATTGTTTTGAACGAAGCGAGTTT
TGATGCACACAACATGGACAATGGAGAGACATTAAGTATGACGATCTATC
GCGTGATGGGTGGAAGCCTCCAACAGGCCAAACAATCAatcgaaaatatc
aaaaagaaaaaggaaggaCCACCAGTTTGTAAAGCCGGATCCCTTTGTCT
TAGAGACAGAAATGGTAAGTTCAAGACTACCATGGGTCAAAATTAGTCTG
AATATAGAACATACAATACAATTATTAACACATATTCAAGTTTTCTTTCA
CATGATTCTCCCCTACagctacttgtttcaaataaacgccccttctaGAG
GGggggagtttttttagaatttttcctCGAAGGCTAGGGAAGATTTGCTT
ATATCAAGGAAAGGTACCCGTTTTGCACAAAAATGACGCATTCTGTTGAC
GTCATTTACTAGTTTAAAATGGTTGGTAGCAGTGACCCATATCAAAATTC
TTTTCTAATTTCAGCATCGTCCAAGATTTCACCACCTTACTTTACGATTT
TAATTGCGAGCATTGTATTTATGATGTTTATTTTCATGTAAAtagttagc
ctggatatccagactgtATGTAAACTAAAGTCTGTTCGCTTTAAATGTGC
actaatttttgttttgcttccTATATTTCAACGAAACCTTCAATACTAAC
ATATTATATattgttgaaaagaaaattcagagCAGTAtaattctagaaaa
aaaattcaaaaaattgtagaagataaaaaatgaaggaGAAAAATTTCCTT
AGTAAACTTGACTTTTCCTGCGCGACGNatgaaggagaaaaatgaaCTTT
CCTTAGTAAACTTGACTTTTCCTGCGCGACGTTCCCTTCCAACATcgtaa
gggctctgaccatagtgaatttttaatatttgccacttacaaaagataaa
gttctacttgatgtagcccacaaaactgtgacatgttatacattttctgt
taggctaaTTATTCGTGAGtctgaaaatctaaaaatcgcaatgaaaaaat
ttggcgaagaagaaaatgaagacttttgcgaagaagagtatttcaacttt
gaagagcttagtttcggcgaagaaaaagcattttgaaataatttttgtgg
tagatggtgtatcttttaccgaactaaaattagtttttcggaaaattttt
ctaaaagcttatttgcttcaaaatctttaaaagagtgctttttgaccaat
ttttcatcccaatttttcataagaaaaacagccataaattttgatgcatt
aatttagaaatttatttttccgaaaaaattaaaacagttcaattcatgat
attcatgacgtaatctttcatACGaaagcacccgagataacccggaacta
gtggcaagaTAACAAAACaatagtggcaaattttgccactagtcccggat
tattttgtgtgcttccgtataaaagattacatcatgaatatcatgaattc
tttgcggacagtttgaaaaaacttcgaaacaaaaaggttaattacccatt
aaaacttagaactttttataaaagaaggtgatgcacccgggggggggggN
ACCATAGTCCCAAGGGTAAGACAGAGAATTGGATTGGAACAGATttgaaa
ctaaaaaattaaaaagagaaatctaaaaatgtcaCTTGATGATTTTGGAA
ATAGTAGAAAAATTCTTCTCcctctaattttgattttataaaaattttca
atctttcaaaCCCTTCAAATAATTCACTTCGAGagtatctttccaacggt
gtataactttTAACATTGTTCTAAAGAAATTGTTCAAAAAGTAAAGTGTT
CACTTACCTTTGAGACGGACTTTAGTAGATATTTTGATTTGGGTGGGGTT
TATTGGCTTCGATCTTAGCCTGTTTGGAACGTAAAtgtaagtctaatgtt
aaatgTCAGTGTTATAACTCACATTCCCAAAGCTTGTCAATAAAGGATTT
AaaaatcgtttgtggtttttAAAAGTTTGCAGATAATTCTACTTTTGTCT
CGGATATTACGGCCATGATTGTAGTCTAGGTAATTAAGCAtacgtaaaaa
aaaaattatctgtAGAAAAAGAGTAAACACCGGAAGATCACATTGAAAGG
GATTGTTTTGAACGAAGCGAGTTTTGATGCACACAACATGGACAATGGAG
AGACATTAAGTATGACGATCTATCGCGTGATGGGTGGAAGCCTCCAACAG
GCCAAACAATCAatcgaaaatatcaaaaagaaaaaggaaggaCCACCAGT
TTGTAAAGCCGGATCCCTTTGTCTTAGAGACAGAAATGGTAAGTTCAAGA
CTACCATGGGTCAAAATTAGTCTGAATATAGAACATACAATACAATTATT
AACACATATTCAAGTTTTCTTTCACATGATTCTCCCCTACagctacttgt
ttcaaataaacgccccttctaGAGGGggggagtttttttagaatttttcc
tCGAAGGCTAGGGAAGATTTGCTTATATCAAGGAAAGGTACCCGTTTTGC
ACAAAAATGACGCATTCTGTTGACGTCATTTACTAGTTTAAAATGGTTGG
TAGCAGTGACCCATATCAAAATTCTTTTCTAATTTCAGCATCGTCCAAGA
TTTCACCACCTTACTTTACGATTTTAATTGCGAGCATTGTATTTATGATG
TTTATTTTCATGTAAAtagttagcctggatatccagactgtATGTAAACT
AAAGTCTGTTCGCTTTAAATGTGCactaatttttgttttgcttccTATAT
TTCAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022365-exon-sc0000414-1491911889:15008..15470 | TCONS_00022365-exon-sc0000414-1491911889:15008..15470 | Clytia hemisphaerica | exon |
| TCONS_00022365-exon-sc0000414-1510915933:15008..15470 | TCONS_00022365-exon-sc0000414-1510915933:15008..15470 | Clytia hemisphaerica | exon |
| TCONS_00022365-exon-sc0000414-1575043694:15008..15470 | TCONS_00022365-exon-sc0000414-1575043694:15008..15470 | Clytia hemisphaerica | exon |
| TCONS_00022365-exon-sc0000414-1491911889:15631..16021 | TCONS_00022365-exon-sc0000414-1491911889:15631..16021 | Clytia hemisphaerica | exon |
| TCONS_00022365-exon-sc0000414-1510915933:15631..16021 | TCONS_00022365-exon-sc0000414-1510915933:15631..16021 | Clytia hemisphaerica | exon |
| TCONS_00022365-exon-sc0000414-1575043694:15631..16021 | TCONS_00022365-exon-sc0000414-1575043694:15631..16021 | Clytia hemisphaerica | exon |
| TCONS_00022365-exon-sc0000414-1491911889:18873..19095 | TCONS_00022365-exon-sc0000414-1491911889:18873..19095 | Clytia hemisphaerica | exon |
| TCONS_00022365-exon-sc0000414-1510915933:18873..19095 | TCONS_00022365-exon-sc0000414-1510915933:18873..19095 | Clytia hemisphaerica | exon |
| TCONS_00022365-exon-sc0000414-1575043694:18873..19095 | TCONS_00022365-exon-sc0000414-1575043694:18873..19095 | Clytia hemisphaerica | exon |
| TCONS_00022365-exon-sc0000414-1491911889:19396..19564 | TCONS_00022365-exon-sc0000414-1491911889:19396..19564 | Clytia hemisphaerica | exon |
| TCONS_00022365-exon-sc0000414-1510915933:19396..19564 | TCONS_00022365-exon-sc0000414-1510915933:19396..19564 | Clytia hemisphaerica | exon |
| TCONS_00022365-exon-sc0000414-1575043694:19396..19564 | TCONS_00022365-exon-sc0000414-1575043694:19396..19564 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000414 | supercontig | sc0000414:15008..19564 + |
Blast
The following BLAST results are available for this feature:
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