TCONS_00022362 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022362
Unique NameTCONS_00022362
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1065

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022362 ID=TCONS_00022362|Name=TCONS_00022362|organism=Clytia hemisphaerica|type=transcript|length=1065bp
GCACAAGAGGCAAGTTTGAAATCGTTTTGTGATCGAGGCatctatgacgt
catcatcttGAGAGGGGTCCAACATTGTTCTTTCAATGGAAAACTTGCTG
CAATGCCTGCTTTGAATTTCGCCAATCATTGTCACCAACGTCGTTCAGCA
TGGTACGCTAAATACCAATACCTCGAATGTCCCTCCATGGAAGACGATAT
CAGATATTGTCAAGTCAATGGAGTCAAGATTCTCTTAGACATTGGAGGAT
TGGGCTATCATATCATTTTCAGCTCGCGAACTGAAGCGTTGGAGTTCTCA
AAACAGATTTGGTTTGCTTTTCTTGGGAACTGGCGTTACTCAACCAGAAC
CTTCGGGCAaGACATCATCTTGGATGGAATCAACTTGTCATTACATTCGA
GCGCCAATCCCTTTATGAGCGATTTTCTTCACGACCTTCGTGATCGAATG
GAAAATGATTGGAAAAAGACCTACCTGATAACCGCCTCACCACCGTGTTA
CAAAGAATCTTACTCTTTCTTTCAAACCTACTCAAAAGTTTTCGATCGAA
TCTTCATCGACTTTACCCTCCATCGGAGATGTGAATATAAAGGTCCATCG
AGTGGCCAATCAAAAGTGGATTTCCTCCTGGACACTGATTGGTTCACTAG
AGATACACGACCGGAGCTGAGATCGTTTTGGTTCGTATTATCGGCATCAT
CGTTTACCAAAGGTCTTTATCTGACAAGAGGAGAGATTGACGAATTAGTG
AAAAAGAGTAAACACCGGAAGATCACATTGAAAGGGATTGTTTTGAACGA
AGCGAGTTTTGATGCACACAACATGGACAATGGAGAGACATTAAGTATGA
CGATCTATCGCGTGATGGGTGGAAGCCTCCAACAGGCCAAACAATCAatc
gaaaatatcaaaaagaaaaaggaaggaCCACCAGTTTGTAAAGCCGGATC
CCTTTGTCTTAGAGACAGAAATGCATCGTCCAAGATTTCACCACCTTACT
TTACGATTTTAATTGCGAGCATTGTATTTATGATGTTTATTTTCATGTAA
Atagttagcctggat
Run BLAST on NCBI

transcript from alignment at sc0000414:14802..17363+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022362 ID=TCONS_00022362|Name=TCONS_00022362|organism=Clytia hemisphaerica|type=transcript|length=2562bp|location=Sequence derived from alignment at sc0000414:14802..17363+ (Clytia hemisphaerica)
GCACAAGAGGCAAGTTTGAAATCGTTTTGTGATCGAGGCatctatgacgt
catcatcttGAGAGGGGTCCAACATTGTTCTTTCAATGGAAAACTTGGTA
AATATCTAATTTAATTCTCTTAAAACTCAACTCATAGTAAATCCTGccta
tattatgctgatatataagcaatgtttttcttttcctctttctgaccaat
cttgctccacatccgtgtcaattcaaaaagcttgtaaattaaaattgacg
agtaagcaaacgatatcactcttatcaAAAAAGCCTTTAAAGTGCATGAG
AACTCAAAAACCTTGACTaaagaaattttcttcgaaattAAACAACTAAA
CTTGTGCTTTTTAGTACTGAAGGCTTTTAATCAAGGAAGTTTGTTTCTTC
TATACAGCTGCAATGCCTGCTTTGAATTTCGCCAATCATTGTCACCAACG
TCGTTCAGCATGGTACGCTAAATACCAATACCTCGAATGTCCCTCCATGG
AAGACGATATCAGATATTGTCAAGTCAATGGAGTCAAGATTCTCTTAGAC
ATTGGAGGATTGGGCTATCATATCATTTTCAGCTCGCGAACTGAAGCGTT
GGAGTTCTCAAAACAGATTTGGTTTGCTTTTCTTGGGAACTGGCGTTACT
CAACCAGAACCTTCGGGCAGTAAGTTCTTTTCGTTTTTAGAAATAAAAtt
ggatttatttatttaatgatactcttaccattttattttatttatactaA
TGTTTTTCCATTTTGTACGTGCcattttttgcataaattacTGAAATTCA
CCACCCtaactgattttttttaattccagaGACATCATCTTGGATGGAAT
CAACTTGTCATTACATTCGAGCGCCAATCCCTTTATGAGCGATTTTCTTC
ACGACCTTCGTGATCGAATGGAAAATGATTGGAAAAAGACCTACCTGATA
ACCGCCTCACCACCGTGTTACAAAGAATCTTACTCTTTCTTTCAAACCTA
CTCAAAAGTTTTCGATCGAATCTTCATCGACTTTACCCTCCATCGGAGAT
GTGAATATAAAGGTCCATCGAGTGGCCAATCAAAAGTGGATTTCCTCCTG
GACACTGATTGGTTCACTAGAGATACACGACCGGAGCTGAGATCGTTTTG
GTTCGTATTATCGGCATCATCGTTTACCAAAGGTCTTTATCTGACAAGAG
GAGAGATTGACGAATTAGTGGTGAGTGGgtcttttcaaaattcaaaaaaa
acatttaaaaacatGATGCTAAAATTCTACGAGCAGGGGGTCGGGGTAAA
ACCAATCAGCTGCGGCCAGTAATAACCTGGGAAAATTATGACagtattga
aatattttgacgTTTCTAAAGTAACTGCAAATGCTTTAACTGTCAAACTT
GTCTTGTTGTCTCGAAGCCAGTTGGGGAAAGAACCATAGTCCCAAGGGTA
AGACAGAGAATTGGATTGGAACAGATttgaaactaaaaaattaaaaagag
aaatctaaaaatgtcaCTTGATGATTTTGGAAATAGTAGAAAAATTCTTC
TCcctctaattttgattttataaaaattttcaatctttcaaaCCCTTCAA
ATAATTCACTTCGAGagtatctttccaacggtgtataactttTAACATTG
TTCTAAAGAAATTGTTCAAAAAGTAAAGTGTTCACTTACCTTTGAGACGG
ACTTTAGTAGATATTTTGATTTGGGTGGGGTTTATTGGCTTCGATCTTAG
CCTGTTTGGAACGTAAAtgtaagtctaatgttaaatgTCAGTGTTATAAC
TCACATTCCCAAAGCTTGTCAATAAAGGATTTAaaaatcgtttgtggttt
ttAAAAGTTTGCAGATAATTCTACTTTTGTCTCGGATATTACGGCCATGA
TTGTAGTCTAGGTAATTAAGCAtacgtaaaaaaaaaattatctgtAGAAA
AAGAGTAAACACCGGAAGATCACATTGAAAGGGATTGTTTTGAACGAAGC
GAGTTTTGATGCACACAACATGGACAATGGAGAGACATTAAGTATGACGA
TCTATCGCGTGATGGGTGGAAGCCTCCAACAGGCCAAACAATCAatcgaa
aatatcaaaaagaaaaaggaaggaCCACCAGTTTGTAAAGCCGGATCCCT
TTGTCTTAGAGACAGAAATGGTAAGTTCAAGACTACCATGGGTCAAAATT
AGTCTGAATATAGAACATACAATACAATTATTAACACATATTCAAGTTTT
CTTTCACATGATTCTCCCCTACagctacttgtttcaaataaacgcccctt
ctaGAGGGggggagtttttttagaatttttcctCGAAGGCTAGGGAAGAT
TTGCTTATATCAAGGAAAGGTACCCGTTTTGCACAAAAATGACGCATTCT
GTTGACGTCATTTACTAGTTTAAAATGGTTGGTAGCAGTGACCCATATCA
AAATTCTTTTCTAATTTCAGCATCGTCCAAGATTTCACCACCTTACTTTA
CGATTTTAATTGCGAGCATTGTATTTATGATGTTTATTTTCATGTAAAta
gttagcctggat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012547XLOC_012547Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022362-exon-sc0000414-1491911889:14802..14898TCONS_00022362-exon-sc0000414-1491911889:14802..14898Clytia hemisphaericaexon
TCONS_00022362-exon-sc0000414-1510915933:14802..14898TCONS_00022362-exon-sc0000414-1510915933:14802..14898Clytia hemisphaericaexon
TCONS_00022362-exon-sc0000414-1575043694:14802..14898TCONS_00022362-exon-sc0000414-1575043694:14802..14898Clytia hemisphaericaexon
TCONS_00022362-exon-sc0000414-1491911889:15209..15470TCONS_00022362-exon-sc0000414-1491911889:15209..15470Clytia hemisphaericaexon
TCONS_00022362-exon-sc0000414-1510915933:15209..15470TCONS_00022362-exon-sc0000414-1510915933:15209..15470Clytia hemisphaericaexon
TCONS_00022362-exon-sc0000414-1575043694:15209..15470TCONS_00022362-exon-sc0000414-1575043694:15209..15470Clytia hemisphaericaexon
TCONS_00022362-exon-sc0000414-1491911889:15631..16021TCONS_00022362-exon-sc0000414-1491911889:15631..16021Clytia hemisphaericaexon
TCONS_00022362-exon-sc0000414-1510915933:15631..16021TCONS_00022362-exon-sc0000414-1510915933:15631..16021Clytia hemisphaericaexon
TCONS_00022362-exon-sc0000414-1575043694:15631..16021TCONS_00022362-exon-sc0000414-1575043694:15631..16021Clytia hemisphaericaexon
TCONS_00022362-exon-sc0000414-1491911889:16749..16971TCONS_00022362-exon-sc0000414-1491911889:16749..16971Clytia hemisphaericaexon
TCONS_00022362-exon-sc0000414-1510915933:16749..16971TCONS_00022362-exon-sc0000414-1510915933:16749..16971Clytia hemisphaericaexon
TCONS_00022362-exon-sc0000414-1575043694:16749..16971TCONS_00022362-exon-sc0000414-1575043694:16749..16971Clytia hemisphaericaexon
TCONS_00022362-exon-sc0000414-1491911889:17272..17363TCONS_00022362-exon-sc0000414-1491911889:17272..17363Clytia hemisphaericaexon
TCONS_00022362-exon-sc0000414-1510915933:17272..17363TCONS_00022362-exon-sc0000414-1510915933:17272..17363Clytia hemisphaericaexon
TCONS_00022362-exon-sc0000414-1575043694:17272..17363TCONS_00022362-exon-sc0000414-1575043694:17272..17363Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000414supercontigsc0000414:14802..17363 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.323331	0	0	0.384712	0.818218	0.0470853	0.0023213	0.203752	0	0	0	0	0.200381	0.198998	1.43959	2.01873	1.25546	0.616812	0	0	0	0	0	0.133496	0	0	0	0.0999733	0.675636
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022362 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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