TCONS_00022353 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022353
Unique NameTCONS_00022353
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length821

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022353 ID=TCONS_00022353|Name=TCONS_00022353|organism=Clytia hemisphaerica|type=transcript|length=821bp
aaaaataaaaaataaataaaataacttTAGAAAATGTCATCAGCTCAATC
AGACAATCAAAATAACCGCAAACGAAATCATACTGAAGTAGAGAGTAGTA
GTCATGACAACCAGGCCAACAAAAAGGAGATTCAAGATGGCTTCTCATGG
TGGACGAATCTGATGATGGACATCCCTGCACAAAGTAAACAAATAGTCGT
GAACAAGATTCAGCAACAGAAAATTGTTGAAGTTCACCCGAATGAACCAA
ATCACGAGGAATGAGAAGAATCAACTCATGGTCAGGAAGATGCTTATCTG
AGTACATCGGTTGCTGCTTAGTCAATGTTTTATTATAACACATGGATTTT
TAAGGTTGAAAGCCTGGAATCGATTGGTTTTGGTAATGGATGATGCTTTG
GTTTGCTGTTTCATCCATGAAAACCTTCTTGAAGATATCAATGTTGACTT
TTTATAAAGACCATATCAGGCTTCTTCAACATGGTGGATGCTTGTTCGTA
AGTTTTAcatgatatttattttttaatagcacacatttttatgaattttt
atcaCAAAGAAATTGAGCAATTAGTTCTTTGGAGTATTTGGCTAATATTT
GCGTCAAAGTTTTTGAACGATTATTTTCTCTGCATGCCACCGTGTAAACG
TACCCAAGGACTGGGTCTCCTATAAACAAGTTCTTCCGTTTCATCGGCCA
TGGATCAAAATATGGCATGCGAGTGTGTCTTAACTCAGTTTGGTCTCTTT
TACATCGTCCCTCAAGATGATTTTTGTCTGTAAACAGACTCATTATGTAC
GTAAAATACATGGTCATAGAG
Run BLAST on NCBI

protein sequence of TCONS_00022353-protein

>TCONS_00022353-protein ID=TCONS_00022353-protein|Name=TCONS_00022353-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MCYNKTLTKQQPMYSDKHLPDHELILLIPRDLVHSGELQQFSVAESCSRL
FVYFVQGCPSSDSSTMRSHLESPFCWPGCHDYYSLLQYDFVCGYFDCLIE
LMTFSKVILFIFYF
Run BLAST on NCBI

transcript from alignment at sc0000411:98092..98912

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022353 ID=TCONS_00022353|Name=TCONS_00022353|organism=Clytia hemisphaerica|type=transcript|length=821bp|location=Sequence derived from alignment at sc0000411:98092..98912 (Clytia hemisphaerica)
CTCTATGACCATGTATTTTACGTACATAATGAGTCTGTTTACAGACAAAA
ATCATCTTGAGGGACGATGTAAAAGAGACCAAACTGAGTTAAGACACACT
CGCATGCCATATTTTGATCCATGGCCGATGAAACGGAAGAACTTGTTTAT
AGGAGACCCAGTCCTTGGGTACGTTTACACGGTGGCATGCAGAGAAAATA
ATCGTTCAAAAACTTTGACGCAAATATTAGCCAAATACTCCAAAGAACTA
ATTGCTCAATTTCTTTGtgataaaaattcataaaaatgtgtgctattaaa
aaataaatatcatgTAAAACTTACGAACAAGCATCCACCATGTTGAAGAA
GCCTGATATGGTCTTTATAAAAAGTCAACATTGATATCTTCAAGAAGGTT
TTCATGGATGAAACAGCAAACCAAAGCATCATCCATTACCAAAACCAATC
GATTCCAGGCTTTCAACCTTAAAAATCCATGTGTTATAATAAAACATTGA
CTAAGCAGCAACCGATGTACTCAGATAAGCATCTTCCTGACCATGAGTTG
ATTCTTCTCATTCCTCGTGATTTGGTTCATTCGGGTGAACTTCAACAATT
TTCTGTTGCTGAATCTTGTTCACGACTATTTGTTTACTTTGTGCAGGGAT
GTCCATCATCAGATTCGTCCACCATGAGAAGCCATCTTGAATCTCCTTTT
TGTTGGCCTGGTTGTCATGACTACTACTCTCTACTTCAGTATGATTTCGT
TTGCGGTTATTTTGATTGTCTGATTGAGCTGATGACATTTTCTAaagtta
ttttatttattttttattttt

Coding sequence (CDS) from alignment at sc0000411:98092..98912

>TCONS_00022353 ID=TCONS_00022353|Name=TCONS_00022353|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at sc0000411:98092..98912 (Clytia hemisphaerica)
ATGTGTTATAATAAAACATTGACTAAGCAGCAACCGATGTACTCAGATAA
GCATCTTCCTGACCATGAGTTGATTCTTCTCATTCCTCGTGATTTGGTTC
ATTCGGGTGAACTTCAACAATTTTCTGTTGCTGAATCTTGTTCACGACTA
TTTGTTTACTTTGTGCAGGGATGTCCATCATCAGATTCGTCCACCATGAG
AAGCCATCTTGAATCTCCTTTTTGTTGGCCTGGTTGTCATGACTACTACT
CTCTACTTCAGTATGATTTCGTTTGCGGTTATTTTGATTGTCTGATTGAG
CTGATGACATTTTCTAaagttattttatttattttttatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012538XLOC_012538Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022353-proteinTCONS_00022353-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022353-exon-sc0000411-1491911889:98092..98912TCONS_00022353-exon-sc0000411-1491911889:98092..98912Clytia hemisphaericaexon
TCONS_00022353-exon-sc0000411-1510915933:98092..98912TCONS_00022353-exon-sc0000411-1510915933:98092..98912Clytia hemisphaericaexon
TCONS_00022353-exon-sc0000411-1575043694:98092..98912TCONS_00022353-exon-sc0000411-1575043694:98092..98912Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000411supercontigsc0000411:98092..98912 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.289851	0.11306	0.328184	0.256861	1.01629	0.86486	0.447179	0.488417	0.146551	0.423563	0.117463	0.0386078	0.115662	0.0400389	0.0658348	0.0706508	0.21759	0.312232	0.0616236	0	0.224195	0	0.199402	0.181286	0.24896	0.999859	0.0794886	0.0848324	0.0643424	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022353 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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