TCONS_00022351 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022351
Unique NameTCONS_00022351
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length802

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022351 ID=TCONS_00022351|Name=TCONS_00022351|organism=Clytia hemisphaerica|type=transcript|length=802bp
CTGATGTTCTTCAAAAAATTCCTTGTTTCGAGagtacaaaaataaataaa
attcttcaaaatgttgaaatgagtttattttattttacttttacagaaaa
aaactcAGCAAACCAAAAAATATAGCAGTAATTATCTCATCAAAAAAGAT
GTATGTTACTGACAACATTTCATAATAAACTACCTGCAACCCTACAAAAA
AACTAGGACTAAGCCAGGGATTGAATAAAAGACTTAAAAGTGCGCCATAT
AATTTTTTATCTGATAAGAGAAGCTTTGGACCTGTGAATTTTCTTCTGGG
AATTCTTAGATTTAGCGATACCAGGGGGTCAATACTACAATTCAAGAAAT
ATTAAGCTTCAAATCTTTGCAAATATCCACCACTTTTTCAACACAAGTAG
CAGCATTTTCATTGCCCTGTTTTTTAATACCATTAATTCTTAAACATGAT
CTTCTAGAATACTGTTCCTGTGCATCTTTTTGCTTTGTCAAAAAATCGAT
AGAGCTCGAGAGTACAGCATTTTTGTCGGACAAAGTATTGACCGTAGATG
TAAAGTCGAACACCTTTTGTTCAAGAAGATGAATCCTTTCCTCATGATCT
ACACTATTCTTCTCTAAAGAAGCAATTTTCAGCTCTTGGTACTCAAGACG
CTCTAacaatgtttgaaaaatattctttatttCTTCCATATCATCCTTCG
TTGCAAGTTTTTGGCTAAGTTCCAAAAGTTTTTTGTCCAGAAATTCATCT
TGTTTTGTAGTACCAGAGGAACTCCTCAAAACTCTTTGACTCATGACagc
aa
Run BLAST on NCBI

protein sequence of TCONS_00022351-protein

>TCONS_00022351-protein ID=TCONS_00022351-protein|Name=TCONS_00022351-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
AVMSQRVLRSSSGTTKQDEFLDKKLLELSQKLATKDDMEEIKNIFQTLLE
RLEYQELKIASLEKNSVDHEERIHLLEQKVFDFTSTVNTLSDKNAVLSSS
IDFLTKQKDAQEQYSRRSCLRINGIKKQGNENAATCVEKVVDICKDLKLN
IS
Run BLAST on NCBI

transcript from alignment at sc0000411:88641..89442

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022351 ID=TCONS_00022351|Name=TCONS_00022351|organism=Clytia hemisphaerica|type=transcript|length=802bp|location=Sequence derived from alignment at sc0000411:88641..89442 (Clytia hemisphaerica)
ttgctGTCATGAGTCAAAGAGTTTTGAGGAGTTCCTCTGGTACTACAAAA
CAAGATGAATTTCTGGACAAAAAACTTTTGGAACTTAGCCAAAAACTTGC
AACGAAGGATGATATGGAAGaaataaagaatatttttcaaacattgtTAG
AGCGTCTTGAGTACCAAGAGCTGAAAATTGCTTCTTTAGAGAAGAATAGT
GTAGATCATGAGGAAAGGATTCATCTTCTTGAACAAAAGGTGTTCGACTT
TACATCTACGGTCAATACTTTGTCCGACAAAAATGCTGTACTCTCGAGCT
CTATCGATTTTTTGACAAAGCAAAAAGATGCACAGGAACAGTATTCTAGA
AGATCATGTTTAAGAATTAATGGTATTAAAAAACAGGGCAATGAAAATGC
TGCTACTTGTGTTGAAAAAGTGGTGGATATTTGCAAAGATTTGAAGCTTA
ATATTTCTTGAATTGTAGTATTGACCCCCTGGTATCGCTAAATCTAAGAA
TTCCCAGAAGAAAATTCACAGGTCCAAAGCTTCTCTTATCAGATAAAAAA
TTATATGGCGCACTTTTAAGTCTTTTATTCAATCCCTGGCTTAGTCCTAG
TTTTTTTGTAGGGTTGCAGGTAGTTTATTATGAAATGTTGTCAGTAACAT
ACATCTTTTTTGATGAGATAATTACTGCTATATTTTTTGGTTTGCTgagt
ttttttctgtaaaagtaaaataaaataaactcatttcaacattttgaaga
attttatttatttttgtactCTCGAAACAAGGAATTTTTTGAAGAACATC
AG

Coding sequence (CDS) from alignment at sc0000411:88641..89442

>TCONS_00022351 ID=TCONS_00022351|Name=TCONS_00022351|organism=Clytia hemisphaerica|type=CDS|length=459bp|location=Sequence derived from alignment at sc0000411:88641..89442 (Clytia hemisphaerica)
gctGTCATGAGTCAAAGAGTTTTGAGGAGTTCCTCTGGTACTACAAAACA
AGATGAATTTCTGGACAAAAAACTTTTGGAACTTAGCCAAAAACTTGCAA
CGAAGGATGATATGGAAGaaataaagaatatttttcaaacattgtTAGAG
CGTCTTGAGTACCAAGAGCTGAAAATTGCTTCTTTAGAGAAGAATAGTGT
AGATCATGAGGAAAGGATTCATCTTCTTGAACAAAAGGTGTTCGACTTTA
CATCTACGGTCAATACTTTGTCCGACAAAAATGCTGTACTCTCGAGCTCT
ATCGATTTTTTGACAAAGCAAAAAGATGCACAGGAACAGTATTCTAGAAG
ATCATGTTTAAGAATTAATGGTATTAAAAAACAGGGCAATGAAAATGCTG
CTACTTGTGTTGAAAAAGTGGTGGATATTTGCAAAGATTTGAAGCTTAAT
ATTTCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012536XLOC_012536Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022351-proteinTCONS_00022351-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022351-exon-sc0000411-1491911889:88641..89442TCONS_00022351-exon-sc0000411-1491911889:88641..89442Clytia hemisphaericaexon
TCONS_00022351-exon-sc0000411-1510915933:88641..89442TCONS_00022351-exon-sc0000411-1510915933:88641..89442Clytia hemisphaericaexon
TCONS_00022351-exon-sc0000411-1575043694:88641..89442TCONS_00022351-exon-sc0000411-1575043694:88641..89442Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000411supercontigsc0000411:88641..89442 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0598276	0	0.270959	0	0.806808	0.701306	0.769178	0.432057	0.100831	0.0624478	0.242453	0	0.119368	0.0413217	0.101916	0.0364572	0.359299	0.138101	0	0.0665507	0.404913	0.338575	0.0685971	0.124729	0.0642342	0.114655	0	0	0	0.13531
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022351 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top