TCONS_00022346 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022346
Unique NameTCONS_00022346
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2298

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022346 ID=TCONS_00022346|Name=TCONS_00022346|organism=Clytia hemisphaerica|type=transcript|length=2298bp
NNTCAAGTCATTATAAGATTATGCAAGGCTGGTCCTGCAACTCAGAAACA
ACAGACAATACAACATCAAATGGGTGCATTGATATTAGTAGaacttttga
aaatgtgatGAACGAAAATATCAATCGAGTTGTGGGTGATATCAATACAT
CAAGAATTCTCCAATTTCAATCCAAAGTTATGACTCCTAAGAAATCGAAC
ACTCCTGCATCACTTCGGCAAATACTACCTTCACCTTCCAAGCCAATTTC
TCGCAAGATACAAACTACCGCTGAAAAGGTGTTGGACGCTCCTTCATATA
TTGACGACTACtATCTTAACCTTCTACACTGGAGTCCTTCAGTTGATCTC
TTGGCTGTTGCTTTGGACGATTCAGCTTACGTTTGGGTCCCTTCCACTGG
TGACATTTCATGTCTGTGTAATACTGATGATCCGTCAAACTACATCTCGT
CACTTCGATGGATTGAGCAAGGAGCTCATCTTGCTATCGGAACTGCCAGT
GGTCAAATCCAGTTATGGGACGTGGAACACAAGAAGAAACTACGTACAAT
GGGTGGTCATGCAAGTAGAGTCAGCTCTCTTTCTTGGAACTCTTACATCT
GTTCAAGCGGTTCACGAGGAGGTTTTGTAATGCACAGTGACGTCCGTGCT
CCAGAACACTGTATCAACCGAATCGTCTATCACACTCAAGAAGTCTGCGG
CCTCCAATGGTCTCCTACCGGTCGTTACTTAGCAACCGGTGCCAATGATA
ATAAAGTGGGATTGTGGGATTGGAATAATTTACAGAACACGGACCAGCAT
GCATCGCCAGTCCATGTTTTCACGCAACACAAGGCAGCTGTTAAGgCACT
CGCTTGGTGTCCCTGGCAACACCATGTGTTGGCGAGTGGTGGCGGCGCCC
AAGACAAGACCATTCGCTTTTGGAACGTCAACTCTGGCGCTTGCCTGAAC
ACCGTAGATACCGAATCTCAGGTTTCATCGTTGCTATGGAATGAAAACTA
CCAAGAACTTTTAAGTAGTCATGGTTACCCGAAGAACCAAATCACGCTCT
GGAGTTACCCTAGTATGACGAAGAAAGCAGAATTAGTGGGCCACACAGGA
AGGGTATTGCAGACGACACTTTCTTTCGATAAGACGCGCGTCATGTCGTC
GGCTGGTGATGAGACAATCCGATTGTGGAATTGTTTTGAGTTGAGTCAAG
AGAAGAGAAAGGAGAAGCGAAAGAAACGAAAAGCTTGTCTCAACATTTTG
AATACACCAACAATCAGGTAGTGAGATGGATACTGGTCAGTCtgagagat
tttttttctctttaaattCGAATCACGGTGGTGTGTGAATGTAAACTGTC
TGATTGCTTTAATTCCGTGGTTTGCTTACGTACGGGGAACTGGCTTTGGC
TTGatatttttccttatttttgttttttgtttttataatgtaaatatttt
taatgcctttttaactTATTTTATTCAAATAGCATTATATTATCAGGAGC
TTCCATTAGCGCCTATATGGTCAAGGCCGCAGtcattgatttaaaattaa
TCTTCCGCGTGTTCATTTTCCAGAATATGCAAGATCGATCCCTCGTAAAT
CGTTTTTATAAATTACTATATTAACAACACTAGCCTCCTTTTCGACATGA
TTTTTATTCCCAAAAAAGTATAGATCTTCATTGAAACTATAAAGGGAGAC
TGACGTGGTAATTGTTTTGGAAGGAGACAAGTGTTTTTCATGAGGCGAAT
CATAAAACAAAATCTGGGGAACACAGGGTGCCTCACTCAATTCTTCAGGG
CCCGAAATGGAAGAGTAAGCTTTATATTCTCAATATTGCTTCTAAgtact
attttttgaaactttattcTTATTTCTAGCATTCTTTAGTTTCTTTTAga
ttatttttgtaaacattattttattttcattacttaTCACATCAACGGGT
GCTTTGCTACACAAAACAGGTTTTGCAACTTTCCCCATCACGAATAATCT
TTGATATACCTTGTAGGTGGCGCTTGTTGGAGGGCGCCGGAGGGCGGTAc
ttagaaatttatattttcgggtaaatttgattgaaaattctGCATTGTGA
AAGCCAATCTCTATTCCTTTGGGAATGAGGGCAGACTTTAGGACAAAGTA
TAAAAAAGAATAGTAAAACTGTattatattttccaaaaaaagaccATTTT
GTAAATTCCAACTGGCTTTTGAACCTTTACTGTATAAAGAAAGACGTATA
ATTATAGTAATGCAATGACGTGGAAAGATTCAAACATATGAATCTAGA
Run BLAST on NCBI

protein sequence of TCONS_00022346-protein

>TCONS_00022346-protein ID=TCONS_00022346-protein|Name=TCONS_00022346-protein|organism=Clytia hemisphaerica|type=polypeptide|length=422bp
SSHYKIMQGWSCNSETTDNTTSNGCIDISRTFENVMNENINRVVGDINTS
RILQFQSKVMTPKKSNTPASLRQILPSPSKPISRKIQTTAEKVLDAPSYI
DDYYLNLLHWSPSVDLLAVALDDSAYVWVPSTGDISCLCNTDDPSNYISS
LRWIEQGAHLAIGTASGQIQLWDVEHKKKLRTMGGHASRVSSLSWNSYIC
SSGSRGGFVMHSDVRAPEHCINRIVYHTQEVCGLQWSPTGRYLATGANDN
KVGLWDWNNLQNTDQHASPVHVFTQHKAAVKALAWCPWQHHVLASGGGAQ
DKTIRFWNVNSGACLNTVDTESQVSSLLWNENYQELLSSHGYPKNQITLW
SYPSMTKKAELVGHTGRVLQTTLSFDKTRVMSSAGDETIRLWNCFELSQE
KRKEKRKKRKACLNILNTPTIR
Run BLAST on NCBI

transcript from alignment at sc0000411:301997..306970-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022346 ID=TCONS_00022346|Name=TCONS_00022346|organism=Clytia hemisphaerica|type=transcript|length=4974bp|location=Sequence derived from alignment at sc0000411:301997..306970- (Clytia hemisphaerica)
NNTCAAGTCATTATAAGATTATGCAAGGCTGGTCCTGCAACTCAGAAACA
ACAGACAATACAACATCAAATGGGTGCATTGATATTAGTAGAACTTTTGA
AAATGTGATGAACGAAAATATCAATCGAGTTGTGGGTGATATCAATACAT
CAAGAATTCTCCAATTTCAATCCAAAGTTATGACTCCTAAGAAATGTAAG
TTTCTTAGATAAATAGAACTAGATAATTATTTTCTTCATTAAACCGGACC
ATTAATCCAGGCCTAACAGTTTCATTTTTCTTCTAAATCACCTTGTTTTT
CACGAGTGTCATTATAACTGAAAATTATCTAATTTTGCACTGTTTATTAT
CTTGCCTTCATTATATAGCGAACACTCCTGCATCACTTCGGCAAATACTA
CCTTCACCTTCCAAGCCAATTTCTCGCAAGATACAAACTACCGCTGAAAA
GGTGTTGGACGCTCCTTCATATATTGACGACTACTGTAAGTTTTTTTAAT
TCACTCAGTAGTCCACCGTAAAAAGTAATGAGTTGTTCATGATGTCGTCG
GTTATTCATAGTACTCCCCCTGGATTAACGAGGGAAATGCATATTAGAGG
AAAGTTCAGGCATGAATTATTTTTGTAACTAGGGAAGTCCGGGGTCAAAT
TTAGGGGCTGGATTTCCACTTCAGGTAGACTACAGGAGAACAGACCTTGA
AGGACATTATATTAATCCATTTTGCAATAAGAAAACAAGTTTCAAGATAA
TAGATACAAAGATCACTGTTCAGTTATTACCATATAGTTCTTTTATATAC
ATTTTTTGAAAAGCAAATATTCTCAAAATTTGTCTCTTTAGATCTTAACC
TTCTACACTGGAGTCCTTCAGTTGATCTCTTGGCTGTTGCTTTGGACGAT
TCAGCTTACGTTTGGGTCCCTTCCACTGGTGACATTTCATGTCTGTGTAA
TACTGATGATCCGTCAAACTACATCTCGTCACTTCGATGGATTGAGCAAG
GAGCTCATCTTGCTATCGGAACTGCCAGTGGTCAAATCCAGGTTTAAAAC
TGCTTTGAATTCACTTATTTAAAAAAAGCTATCTTGAGAATTCCCCAGAG
ATCTCCCTTTTGTCCACTTATTCTTTCAGTCTACGCCACAAGTAGTTTTA
TGGCGTCAGATTCTAGGCAATTCGATCTGCCTCCTGGCTACAGGATTAAG
TGTGTTGACGAGTCCCAATAAAGGACGAAATGCATACACCTGCTCTACCA
CCCTATCCCCTAAAAGAAGATAGTTGGACAGAGATTCTATGAATTTCTTC
AAATTCAAAATAAAATTGGGTAATAAAGTCTACATAGTCTAGATATACAC
TAACAGTAAAAGAAACAAAACAAAACAAAACAGACTCACAGAAAAAATAT
TGTGTTATTTTTTATTCCTGTAATATTGAAGCTAACAAAAGAAAAACTTT
GCTTTCTTTACATGGAATGAAAAATTCCGGTTTTTAGTGAGTTGCTCGCT
ACAATCCCACGCGATTTCGCGAATTCTATTGTTGCGAAAAAGCGAGTTCA
AACCACGGGAAAATGAATCCAATGAAAGCAAATATAACAACATTTTTTTC
AGTTATGGGACGTGGAACACAAGAAGAAACTACGTACAATGGGTGGTCAT
GCAAGTAGAGTCAGCTCTCTTTCTTGGAACTCTTACATCTGTTCAAGGTT
GGTTTAAAACGTGTCAAGTCAGTTTTCTAAGGTTTTAGAAATAAATCTCA
AGGTGGAATCTTTTAGAAGGATTTCTTGCCCCTACACCTTTTATGAGTAA
GCGGTGTGCAAATTTCGTTAAAGCCTCAAAACCAAAATCCGAACCTTTAA
AATTACTGAGAAATTAACAAAAGTTAATTGTTCTTTAATTATGCTTGTGT
AATCTGCTTTAACTGAGGCTATGTAGGAAATCATCTTGTCGGTTTGCAGA
TATCCACTTTTAACTTGTAGAGCCATCCAAAACTTAAAGCTGGTTGAGTA
TTACAATTCTGAAATTCTTACAAAAATCATTCTAGATTTGTACATCGTTG
TTTTTCTGTTCTTTTTTTAGCGGTTCACGAGGAGGTTTTGTAATGCACAG
TGACGTCCGTGCTCCAGAACACTGTATCAACCGAATCGTCTATCACACTC
AAGAAGTCTGCGGCCTCCAATGGTCTCCTACCGGTCGTTACTTAGCAACC
GGTGCCAATGATAATAAAGTGGGATTGTGGGATTGGAATAATTTACAGAA
CACGGACCAGCATGCATCGCCAGTCCATGTTTTCACGCAACACAAGGCAG
CTGTTAAGGTTTGCGATACTTTTCATTGAGTTTTTTTAGATATCAAAATA
CCCTGAAGCGGCGACAACAAAAGATGTTGATCTTTTTTTTCTTCATTTTT
ATTTCGAATTTCGTTCTTTTTTTGACAATACTCCACTTCTGATTATTTTT
TCCACGAGTACCGAACCACTGCTAGGCTACCCGATTTAAATTATTTCAAA
AGTTATAGCCTTTCCATATTATATTGAGAAAAACTTCCAATCAAAGCATT
TTGATATATTGTACTGACCAAAACTTAAGAACAGACATCAAACCACGAGT
GTAATTATTGACTTGGTAAGAAAAGCCATATGAGGTGAGGGAGCATACTG
GTTGTAAATAATGGGATCTATTTTCATTGAATTCCATGACAACCAATGAT
TCTACGATAAATCCACGTTTACGCATTGGAATATTTCATGTCTTGTTGCT
TTTAGTCATTTTCCGTACAAAAATCAAGTTAAAATAGTTGCCAGTATATA
AAAATGTATACCTTACTGCTAACAAATCACTGAAATCTTTAGTATTATTT
ACGTTTTTTTTGTGATTTTAGGCACTCGCTTGGTGTCCCTGGCAACACCA
TGTGTTGGCGAGTGGTGGCGGCGCCCAAGACAAGACCATTCGCTTTTGGA
ACGTCAACTCTGGCGCTTGCCTGAACACCGTAGATACCGAATCTCAGGTA
CGCCATTCTTCCTCTCTCAAAAGTCGCACCCGTTTGTTGAAACAGTTGAT
TGATGTATAAGACACTCTGATTTTTCGATTTAGTTCTTGTTGCACAGTTG
AATTTGCTGCATACTCTTAGGTTCCAAATAAACGCCCCCCCCCCCCGCTT
GTTAATTTTTCGAAAATTTTCCAACCCCCCCGGCAATTAGGTCCCCCCCG
TTTCTTCCAATCTTCCAAATTTTCCAACCCCCCCGGCAATTAGGTCCCCC
CCGTTTCTTCCAATCTTCCAAATTTTCCAACCCCCCCGGCAATTAGGTTC
CCCCCGTTTATTAATCTCTAAGAATATTTTCAGATCTCAAAGAGAAGGCC
CCTTATTTTGCTCTAAATAGCCTGATTTTAGCCTATTTTTACCTTATTTT
GGGGTTTCAGAAGTACAATTTCCAACCCCCCCGGCAATTAGGTTCCCCCC
GTTTATTAAAATCTAGAAAATTTTCCAACCCCCCCCCGTTTATTTGGAAC
CTAAGAGTATGCAGTTTAGAGAATGAATTAGTATGGAACCTGGTAGAATT
GCTGCCATCTTTATGAGAGGTTTTCTAAGAGCTCCCTACATTTTAACAAG
TCATCTCATTTTCTCTGTTTCAAAGTTTCACATGTTTCTTTTTTTAGGTT
TCATCGTTGCTATGGAATGAAAACTACCAAGAACTTTTAAGTAGTCATGG
TTACCCGAAGAACCAAATCACGCTCTGGAGTTACCCTAGTATGACGAAGA
AAGCAGAATTAGTGGGCCACACAGGAAGGGTATTGCAGACGACACTTTCT
TTCGATAAGACGCGCGTCATGTCGTCGGCTGGTGATGAGACAATCCGATT
GTGGAATTGTTTTGAGTTGAGTCAAGAGAAGAGAAAGGAGAAGCGAAAGA
AACGAAAAGCTTGTCTCAACATTTTGAATACACCAACAATCAGGTAGTGA
GATGGATACTGGTCAGTCTGAGAGATTTTTTTTCTCTTTAAATTCGAATC
ACGGTGGTGTGTGAATGTAAACTGTCTGATTGCTTTAATTCCGTGGTTTG
CTTACGTACGGGGAACTGGCTTTGGCTTGATATTTTTCCTTATTTTTGTT
TTTTGTTTTTATAATGTAAATATTTTTAATGCCTTTTTAACTTATTTTAT
TCAAATAGCATTATATTATCAGGAGCTTCCATTAGCGCCTATATGGTCAA
GGCCGCAGTCATTGATTTAAAATTAATCTTCCGCGTGTTCATTTTCCAGA
ATATGCAAGATCGATCCCTCGTAAATCGTTTTTATAAATTACTATATTAA
CAACACTAGCCTCCTTTTCGACATGATTTTTATTCCCAAAAAAGTATAGA
TCTTCATTGAAACTATAAAGGGAGACTGACGTGGTAATTGTTTTGGAAGG
AGACAAGTGTTTTTCATGAGGCGAATCATAAAACAAAATCTGGGGAACAC
AGGGTGCCTCACTCAATTCTTCAGGGCCCGAAATGGAAGAGTAAGCTTTA
TATTCTCAATATTGCTTCTAAGTACTATTTTTTGAAACTTTATTCTTATT
TCTAGCATTCTTTAGTTTCTTTTAGATTATTTTTGTAAACATTATTTTAT
TTTCATTACTTATCACATCAACGGGTGCTTTGCTACACAAAACAGGTTTT
GCAACTTTCCCCATCACGAATAATCTTTGATATACCTTGTAGGTGGCGCT
TGTTGGAGGGCGCCGGAGGGCGGTACTTAGAAATTTATATTTTCGGGTAA
ATTTGATTGAAAATTCTGCATTGTGAAAGCCAATCTCTATTCCTTTGGGA
ATGAGGGCAGACTTTAGGACAAAGTATAAAAAAGAATAGTAAAACTGTAT
TATATTTTCCAAAAAAAGACCATTTTGTAAATTCCAACTGGCTTTTGAAC
CTTTACTGTATAAAGAAAGACGTATAATTATAGTAATGCAATGACGTGGA
AAGATTCAAACATATGAATCTAGA

Coding sequence (CDS) from alignment at sc0000411:301997..306970-

>TCONS_00022346 ID=TCONS_00022346|Name=TCONS_00022346|organism=Clytia hemisphaerica|type=CDS|length=8883bp|location=Sequence derived from alignment at sc0000411:301997..306970- (Clytia hemisphaerica)
GTTTCATCGTTGCTATGGAATGAAAACTACCAAGAACTTTTAAGTAGTCA
TGGTTACCCGAAGAACCAAATCACGCTCTGGAGTTACCCTAGTATGACGA
AGAAAGCAGAATTAGTGGGCCACACAGGAAGGGTATTGCAGACGACACTT
TCTTTCGATAAGACGCGCGTCATGTCGTCGGCTGGTGATGAGACAATCCG
ATTGTGGAATTGTTTTGAGTTGAGTCAAGAGAAGAGAAAGGAGAAGCGAA
AGAAACGAAAAGCTTGTCTCAACATTTTGAATACACCAACAATCAGGTAG
GCACTCGCTTGGTGTCCCTGGCAACACCATGTGTTGGCGAGTGGTGGCGG
CGCCCAAGACAAGACCATTCGCTTTTGGAACGTCAACTCTGGCGCTTGCC
TGAACACCGTAGATACCGAATCTCAGCGGTTCACGAGGAGGTTTTGTAAT
GCACAGTGACGTCCGTGCTCCAGAACACTGTATCAACCGAATCGTCTATC
ACACTCAAGAAGTCTGCGGCCTCCAATGGTCTCCTACCGGTCGTTACTTA
GCAACCGGTGCCAATGATAATAAAGTGGGATTGTGGGATTGGAATAATTT
ACAGAACACGGACCAGCATGCATCGCCAGTCCATGTTTTCACGCAACACA
AGGCAGCTGTTAAGTTATGGGACGTGGAACACAAGAAGAAACTACGTACA
ATGGGTGGTCATGCAAGTAGAGTCAGCTCTCTTTCTTGGAACTCTTACAT
CTGTTCAAGATCTTAACCTTCTACACTGGAGTCCTTCAGTTGATCTCTTG
GCTGTTGCTTTGGACGATTCAGCTTACGTTTGGGTCCCTTCCACTGGTGA
CATTTCATGTCTGTGTAATACTGATGATCCGTCAAACTACATCTCGTCAC
TTCGATGGATTGAGCAAGGAGCTCATCTTGCTATCGGAACTGCCAGTGGT
CAAATCCAGCGAACACTCCTGCATCACTTCGGCAAATACTACCTTCACCT
TCCAAGCCAATTTCTCGCAAGATACAAACTACCGCTGAAAAGGTGTTGGA
CGCTCCTTCATATATTGACGACTACTTCAAGTCATTATAAGATTATGCAA
GGCTGGTCCTGCAACTCAGAAACAACAGACAATACAACATCAAATGGGTG
CATTGATATTAGTAGAACTTTTGAAAATGTGATGAACGAAAATATCAATC
GAGTTGTGGGTGATATCAATACATCAAGAATTCTCCAATTTCAATCCAAA
GTTATGACTCCTAAGAAATGTTTCATCGTTGCTATGGAATGAAAACTACC
AAGAACTTTTAAGTAGTCATGGTTACCCGAAGAACCAAATCACGCTCTGG
AGTTACCCTAGTATGACGAAGAAAGCAGAATTAGTGGGCCACACAGGAAG
GGTATTGCAGACGACACTTTCTTTCGATAAGACGCGCGTCATGTCGTCGG
CTGGTGATGAGACAATCCGATTGTGGAATTGTTTTGAGTTGAGTCAAGAG
AAGAGAAAGGAGAAGCGAAAGAAACGAAAAGCTTGTCTCAACATTTTGAA
TACACCAACAATCAGGTAGGCACTCGCTTGGTGTCCCTGGCAACACCATG
TGTTGGCGAGTGGTGGCGGCGCCCAAGACAAGACCATTCGCTTTTGGAAC
GTCAACTCTGGCGCTTGCCTGAACACCGTAGATACCGAATCTCAGCGGTT
CACGAGGAGGTTTTGTAATGCACAGTGACGTCCGTGCTCCAGAACACTGT
ATCAACCGAATCGTCTATCACACTCAAGAAGTCTGCGGCCTCCAATGGTC
TCCTACCGGTCGTTACTTAGCAACCGGTGCCAATGATAATAAAGTGGGAT
TGTGGGATTGGAATAATTTACAGAACACGGACCAGCATGCATCGCCAGTC
CATGTTTTCACGCAACACAAGGCAGCTGTTAAGTTATGGGACGTGGAACA
CAAGAAGAAACTACGTACAATGGGTGGTCATGCAAGTAGAGTCAGCTCTC
TTTCTTGGAACTCTTACATCTGTTCAAGATCTTAACCTTCTACACTGGAG
TCCTTCAGTTGATCTCTTGGCTGTTGCTTTGGACGATTCAGCTTACGTTT
GGGTCCCTTCCACTGGTGACATTTCATGTCTGTGTAATACTGATGATCCG
TCAAACTACATCTCGTCACTTCGATGGATTGAGCAAGGAGCTCATCTTGC
TATCGGAACTGCCAGTGGTCAAATCCAGCGAACACTCCTGCATCACTTCG
GCAAATACTACCTTCACCTTCCAAGCCAATTTCTCGCAAGATACAAACTA
CCGCTGAAAAGGTGTTGGACGCTCCTTCATATATTGACGACTACTTCAAG
TCATTATAAGATTATGCAAGGCTGGTCCTGCAACTCAGAAACAACAGACA
ATACAACATCAAATGGGTGCATTGATATTAGTAGAACTTTTGAAAATGTG
ATGAACGAAAATATCAATCGAGTTGTGGGTGATATCAATACATCAAGAAT
TCTCCAATTTCAATCCAAAGTTATGACTCCTAAGAAATGTTTCATCGTTG
CTATGGAATGAAAACTACCAAGAACTTTTAAGTAGTCATGGTTACCCGAA
GAACCAAATCACGCTCTGGAGTTACCCTAGTATGACGAAGAAAGCAGAAT
TAGTGGGCCACACAGGAAGGGTATTGCAGACGACACTTTCTTTCGATAAG
ACGCGCGTCATGTCGTCGGCTGGTGATGAGACAATCCGATTGTGGAATTG
TTTTGAGTTGAGTCAAGAGAAGAGAAAGGAGAAGCGAAAGAAACGAAAAG
CTTGTCTCAACATTTTGAATACACCAACAATCAGGTAGGCACTCGCTTGG
TGTCCCTGGCAACACCATGTGTTGGCGAGTGGTGGCGGCGCCCAAGACAA
GACCATTCGCTTTTGGAACGTCAACTCTGGCGCTTGCCTGAACACCGTAG
ATACCGAATCTCAGCGGTTCACGAGGAGGTTTTGTAATGCACAGTGACGT
CCGTGCTCCAGAACACTGTATCAACCGAATCGTCTATCACACTCAAGAAG
TCTGCGGCCTCCAATGGTCTCCTACCGGTCGTTACTTAGCAACCGGTGCC
AATGATAATAAAGTGGGATTGTGGGATTGGAATAATTTACAGAACACGGA
CCAGCATGCATCGCCAGTCCATGTTTTCACGCAACACAAGGCAGCTGTTA
AGTTATGGGACGTGGAACACAAGAAGAAACTACGTACAATGGGTGGTCAT
GCAAGTAGAGTCAGCTCTCTTTCTTGGAACTCTTACATCTGTTCAAGATC
TTAACCTTCTACACTGGAGTCCTTCAGTTGATCTCTTGGCTGTTGCTTTG
GACGATTCAGCTTACGTTTGGGTCCCTTCCACTGGTGACATTTCATGTCT
GTGTAATACTGATGATCCGTCAAACTACATCTCGTCACTTCGATGGATTG
AGCAAGGAGCTCATCTTGCTATCGGAACTGCCAGTGGTCAAATCCAGCGA
ACACTCCTGCATCACTTCGGCAAATACTACCTTCACCTTCCAAGCCAATT
TCTCGCAAGATACAAACTACCGCTGAAAAGGTGTTGGACGCTCCTTCATA
TATTGACGACTACTTCAAGTCATTATAAGATTATGCAAGGCTGGTCCTGC
AACTCAGAAACAACAGACAATACAACATCAAATGGGTGCATTGATATTAG
TAGAACTTTTGAAAATGTGATGAACGAAAATATCAATCGAGTTGTGGGTG
ATATCAATACATCAAGAATTCTCCAATTTCAATCCAAAGTTATGACTCCT
AAGAAATGTTTCATCGTTGCTATGGAATGAAAACTACCAAGAACTTTTAA
GTAGTCATGGTTACCCGAAGAACCAAATCACGCTCTGGAGTTACCCTAGT
ATGACGAAGAAAGCAGAATTAGTGGGCCACACAGGAAGGGTATTGCAGAC
GACACTTTCTTTCGATAAGACGCGCGTCATGTCGTCGGCTGGTGATGAGA
CAATCCGATTGTGGAATTGTTTTGAGTTGAGTCAAGAGAAGAGAAAGGAG
AAGCGAAAGAAACGAAAAGCTTGTCTCAACATTTTGAATACACCAACAAT
CAGGTAGGCACTCGCTTGGTGTCCCTGGCAACACCATGTGTTGGCGAGTG
GTGGCGGCGCCCAAGACAAGACCATTCGCTTTTGGAACGTCAACTCTGGC
GCTTGCCTGAACACCGTAGATACCGAATCTCAGCGGTTCACGAGGAGGTT
TTGTAATGCACAGTGACGTCCGTGCTCCAGAACACTGTATCAACCGAATC
GTCTATCACACTCAAGAAGTCTGCGGCCTCCAATGGTCTCCTACCGGTCG
TTACTTAGCAACCGGTGCCAATGATAATAAAGTGGGATTGTGGGATTGGA
ATAATTTACAGAACACGGACCAGCATGCATCGCCAGTCCATGTTTTCACG
CAACACAAGGCAGCTGTTAAGTTATGGGACGTGGAACACAAGAAGAAACT
ACGTACAATGGGTGGTCATGCAAGTAGAGTCAGCTCTCTTTCTTGGAACT
CTTACATCTGTTCAAGATCTTAACCTTCTACACTGGAGTCCTTCAGTTGA
TCTCTTGGCTGTTGCTTTGGACGATTCAGCTTACGTTTGGGTCCCTTCCA
CTGGTGACATTTCATGTCTGTGTAATACTGATGATCCGTCAAACTACATC
TCGTCACTTCGATGGATTGAGCAAGGAGCTCATCTTGCTATCGGAACTGC
CAGTGGTCAAATCCAGCGAACACTCCTGCATCACTTCGGCAAATACTACC
TTCACCTTCCAAGCCAATTTCTCGCAAGATACAAACTACCGCTGAAAAGG
TGTTGGACGCTCCTTCATATATTGACGACTACTTCAAGTCATTATAAGAT
TATGCAAGGCTGGTCCTGCAACTCAGAAACAACAGACAATACAACATCAA
ATGGGTGCATTGATATTAGTAGAACTTTTGAAAATGTGATGAACGAAAAT
ATCAATCGAGTTGTGGGTGATATCAATACATCAAGAATTCTCCAATTTCA
ATCCAAAGTTATGACTCCTAAGAAATGTTTCATCGTTGCTATGGAATGAA
AACTACCAAGAACTTTTAAGTAGTCATGGTTACCCGAAGAACCAAATCAC
GCTCTGGAGTTACCCTAGTATGACGAAGAAAGCAGAATTAGTGGGCCACA
CAGGAAGGGTATTGCAGACGACACTTTCTTTCGATAAGACGCGCGTCATG
TCGTCGGCTGGTGATGAGACAATCCGATTGTGGAATTGTTTTGAGTTGAG
TCAAGAGAAGAGAAAGGAGAAGCGAAAGAAACGAAAAGCTTGTCTCAACA
TTTTGAATACACCAACAATCAGGTAGGCACTCGCTTGGTGTCCCTGGCAA
CACCATGTGTTGGCGAGTGGTGGCGGCGCCCAAGACAAGACCATTCGCTT
TTGGAACGTCAACTCTGGCGCTTGCCTGAACACCGTAGATACCGAATCTC
AGCGGTTCACGAGGAGGTTTTGTAATGCACAGTGACGTCCGTGCTCCAGA
ACACTGTATCAACCGAATCGTCTATCACACTCAAGAAGTCTGCGGCCTCC
AATGGTCTCCTACCGGTCGTTACTTAGCAACCGGTGCCAATGATAATAAA
GTGGGATTGTGGGATTGGAATAATTTACAGAACACGGACCAGCATGCATC
GCCAGTCCATGTTTTCACGCAACACAAGGCAGCTGTTAAGTTATGGGACG
TGGAACACAAGAAGAAACTACGTACAATGGGTGGTCATGCAAGTAGAGTC
AGCTCTCTTTCTTGGAACTCTTACATCTGTTCAAGATCTTAACCTTCTAC
ACTGGAGTCCTTCAGTTGATCTCTTGGCTGTTGCTTTGGACGATTCAGCT
TACGTTTGGGTCCCTTCCACTGGTGACATTTCATGTCTGTGTAATACTGA
TGATCCGTCAAACTACATCTCGTCACTTCGATGGATTGAGCAAGGAGCTC
ATCTTGCTATCGGAACTGCCAGTGGTCAAATCCAGCGAACACTCCTGCAT
CACTTCGGCAAATACTACCTTCACCTTCCAAGCCAATTTCTCGCAAGATA
CAAACTACCGCTGAAAAGGTGTTGGACGCTCCTTCATATATTGACGACTA
CTTCAAGTCATTATAAGATTATGCAAGGCTGGTCCTGCAACTCAGAAACA
ACAGACAATACAACATCAAATGGGTGCATTGATATTAGTAGAACTTTTGA
AAATGTGATGAACGAAAATATCAATCGAGTTGTGGGTGATATCAATACAT
CAAGAATTCTCCAATTTCAATCCAAAGTTATGACTCCTAAGAAATGTTTC
ATCGTTGCTATGGAATGAAAACTACCAAGAACTTTTAAGTAGTCATGGTT
ACCCGAAGAACCAAATCACGCTCTGGAGTTACCCTAGTATGACGAAGAAA
GCAGAATTAGTGGGCCACACAGGAAGGGTATTGCAGACGACACTTTCTTT
CGATAAGACGCGCGTCATGTCGTCGGCTGGTGATGAGACAATCCGATTGT
GGAATTGTTTTGAGTTGAGTCAAGAGAAGAGAAAGGAGAAGCGAAAGAAA
CGAAAAGCTTGTCTCAACATTTTGAATACACCAACAATCAGGTAGGCACT
CGCTTGGTGTCCCTGGCAACACCATGTGTTGGCGAGTGGTGGCGGCGCCC
AAGACAAGACCATTCGCTTTTGGAACGTCAACTCTGGCGCTTGCCTGAAC
ACCGTAGATACCGAATCTCAGCGGTTCACGAGGAGGTTTTGTAATGCACA
GTGACGTCCGTGCTCCAGAACACTGTATCAACCGAATCGTCTATCACACT
CAAGAAGTCTGCGGCCTCCAATGGTCTCCTACCGGTCGTTACTTAGCAAC
CGGTGCCAATGATAATAAAGTGGGATTGTGGGATTGGAATAATTTACAGA
ACACGGACCAGCATGCATCGCCAGTCCATGTTTTCACGCAACACAAGGCA
GCTGTTAAGTTATGGGACGTGGAACACAAGAAGAAACTACGTACAATGGG
TGGTCATGCAAGTAGAGTCAGCTCTCTTTCTTGGAACTCTTACATCTGTT
CAAGATCTTAACCTTCTACACTGGAGTCCTTCAGTTGATCTCTTGGCTGT
TGCTTTGGACGATTCAGCTTACGTTTGGGTCCCTTCCACTGGTGACATTT
CATGTCTGTGTAATACTGATGATCCGTCAAACTACATCTCGTCACTTCGA
TGGATTGAGCAAGGAGCTCATCTTGCTATCGGAACTGCCAGTGGTCAAAT
CCAGCGAACACTCCTGCATCACTTCGGCAAATACTACCTTCACCTTCCAA
GCCAATTTCTCGCAAGATACAAACTACCGCTGAAAAGGTGTTGGACGCTC
CTTCATATATTGACGACTACTTCAAGTCATTATAAGATTATGCAAGGCTG
GTCCTGCAACTCAGAAACAACAGACAATACAACATCAAATGGGTGCATTG
ATATTAGTAGAACTTTTGAAAATGTGATGAACGAAAATATCAATCGAGTT
GTGGGTGATATCAATACATCAAGAATTCTCCAATTTCAATCCAAAGTTAT
GACTCCTAAGAAATGTTTCATCGTTGCTATGGAATGAAAACTACCAAGAA
CTTTTAAGTAGTCATGGTTACCCGAAGAACCAAATCACGCTCTGGAGTTA
CCCTAGTATGACGAAGAAAGCAGAATTAGTGGGCCACACAGGAAGGGTAT
TGCAGACGACACTTTCTTTCGATAAGACGCGCGTCATGTCGTCGGCTGGT
GATGAGACAATCCGATTGTGGAATTGTTTTGAGTTGAGTCAAGAGAAGAG
AAAGGAGAAGCGAAAGAAACGAAAAGCTTGTCTCAACATTTTGAATACAC
CAACAATCAGGTAGGCACTCGCTTGGTGTCCCTGGCAACACCATGTGTTG
GCGAGTGGTGGCGGCGCCCAAGACAAGACCATTCGCTTTTGGAACGTCAA
CTCTGGCGCTTGCCTGAACACCGTAGATACCGAATCTCAGCGGTTCACGA
GGAGGTTTTGTAATGCACAGTGACGTCCGTGCTCCAGAACACTGTATCAA
CCGAATCGTCTATCACACTCAAGAAGTCTGCGGCCTCCAATGGTCTCCTA
CCGGTCGTTACTTAGCAACCGGTGCCAATGATAATAAAGTGGGATTGTGG
GATTGGAATAATTTACAGAACACGGACCAGCATGCATCGCCAGTCCATGT
TTTCACGCAACACAAGGCAGCTGTTAAGTTATGGGACGTGGAACACAAGA
AGAAACTACGTACAATGGGTGGTCATGCAAGTAGAGTCAGCTCTCTTTCT
TGGAACTCTTACATCTGTTCAAGATCTTAACCTTCTACACTGGAGTCCTT
CAGTTGATCTCTTGGCTGTTGCTTTGGACGATTCAGCTTACGTTTGGGTC
CCTTCCACTGGTGACATTTCATGTCTGTGTAATACTGATGATCCGTCAAA
CTACATCTCGTCACTTCGATGGATTGAGCAAGGAGCTCATCTTGCTATCG
GAACTGCCAGTGGTCAAATCCAGCGAACACTCCTGCATCACTTCGGCAAA
TACTACCTTCACCTTCCAAGCCAATTTCTCGCAAGATACAAACTACCGCT
GAAAAGGTGTTGGACGCTCCTTCATATATTGACGACTACTTCAAGTCATT
ATAAGATTATGCAAGGCTGGTCCTGCAACTCAGAAACAACAGACAATACA
ACATCAAATGGGTGCATTGATATTAGTAGAACTTTTGAAAATGTGATGAA
CGAAAATATCAATCGAGTTGTGGGTGATATCAATACATCAAGAATTCTCC
AATTTCAATCCAAAGTTATGACTCCTAAGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012531XLOC_012531Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022346-proteinTCONS_00022346-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022346-exon-sc0000411-1575043694:306776..306970TCONS_00022346-exon-sc0000411-1575043694:306776..306970Clytia hemisphaericaexon
TCONS_00022346-exon-sc0000411-1575043694:306486..306602TCONS_00022346-exon-sc0000411-1575043694:306486..306602Clytia hemisphaericaexon
TCONS_00022346-exon-sc0000411-1575043694:305930..306129TCONS_00022346-exon-sc0000411-1575043694:305930..306129Clytia hemisphaericaexon
TCONS_00022346-exon-sc0000411-1575043694:305274..305368TCONS_00022346-exon-sc0000411-1575043694:305274..305368Clytia hemisphaericaexon
TCONS_00022346-exon-sc0000411-1575043694:304663..304900TCONS_00022346-exon-sc0000411-1575043694:304663..304900Clytia hemisphaericaexon
TCONS_00022346-exon-sc0000411-1575043694:303974..304099TCONS_00022346-exon-sc0000411-1575043694:303974..304099Clytia hemisphaericaexon
TCONS_00022346-exon-sc0000411-1575043694:301997..303323TCONS_00022346-exon-sc0000411-1575043694:301997..303323Clytia hemisphaericaexon
TCONS_00022346-exon-sc0000411-1510915933:306776..306970TCONS_00022346-exon-sc0000411-1510915933:306776..306970Clytia hemisphaericaexon
TCONS_00022346-exon-sc0000411-1510915933:306486..306602TCONS_00022346-exon-sc0000411-1510915933:306486..306602Clytia hemisphaericaexon
TCONS_00022346-exon-sc0000411-1510915933:305930..306129TCONS_00022346-exon-sc0000411-1510915933:305930..306129Clytia hemisphaericaexon
TCONS_00022346-exon-sc0000411-1510915933:305274..305368TCONS_00022346-exon-sc0000411-1510915933:305274..305368Clytia hemisphaericaexon
TCONS_00022346-exon-sc0000411-1510915933:304663..304900TCONS_00022346-exon-sc0000411-1510915933:304663..304900Clytia hemisphaericaexon
TCONS_00022346-exon-sc0000411-1510915933:303974..304099TCONS_00022346-exon-sc0000411-1510915933:303974..304099Clytia hemisphaericaexon
TCONS_00022346-exon-sc0000411-1510915933:301997..303323TCONS_00022346-exon-sc0000411-1510915933:301997..303323Clytia hemisphaericaexon
TCONS_00022346-exon-sc0000411-1491911889:306776..306970TCONS_00022346-exon-sc0000411-1491911889:306776..306970Clytia hemisphaericaexon
TCONS_00022346-exon-sc0000411-1491911889:306486..306602TCONS_00022346-exon-sc0000411-1491911889:306486..306602Clytia hemisphaericaexon
TCONS_00022346-exon-sc0000411-1491911889:305930..306129TCONS_00022346-exon-sc0000411-1491911889:305930..306129Clytia hemisphaericaexon
TCONS_00022346-exon-sc0000411-1491911889:305274..305368TCONS_00022346-exon-sc0000411-1491911889:305274..305368Clytia hemisphaericaexon
TCONS_00022346-exon-sc0000411-1491911889:304663..304900TCONS_00022346-exon-sc0000411-1491911889:304663..304900Clytia hemisphaericaexon
TCONS_00022346-exon-sc0000411-1491911889:303974..304099TCONS_00022346-exon-sc0000411-1491911889:303974..304099Clytia hemisphaericaexon
TCONS_00022346-exon-sc0000411-1491911889:301997..303323TCONS_00022346-exon-sc0000411-1491911889:301997..303323Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000411supercontigsc0000411:301997..306970 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.05463	4.52531	1.86106	1.03578	73.6867	54.3636	37.3271	37.4957	22.6867	26.948	18.5779	18.1892	9.12541	11.4047	11.192	12.1982	19.1955	15.0682	7.38136	7.84352	9.78341	10.3178	14.3686	13.5909	82.3798	52.8733	6.74081	5.04638	13.2423	14.3392
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR024977Apc4_WD40_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00022346 vs. Swiss-Prot (Human)
Match: CDC20 (Cell division cycle protein 20 homolog OS=Homo sapiens GN=CDC20 PE=1 SV=2)

HSP 1 Score: 366.311 bits (939), Expect = 4.018e-117
Identity = 184/391 (47.06%), Postives = 252/391 (64.45%), Query Frame = 3 
Query:   48 TTDNTTSNGCIDISRTFENVMNENINRVVGDINTSRILQFQSKVMTPKKSNTPASLRQIL---------PSPSKPISRKIQTTAEKVLDAPSYIDDYYLNLLHWSPSVDLLAVALDDSAYVWVPSTGDISCLCNTDDPSNYISSLRWIEQGAHLAIGTASGQIQLWDVEHKKKLRTMGGHASRVSSLSWNSYICSSGSRGGFVMHSDVRAPEHCINRIVYHTQEVCGLQWSPTGRYLATGANDNKVGLWDWNNLQNTDQHASPVHVFTQHKAAVKALAWCPWQHHVLASGGGAQDKTIRFWNVNSGACLNTVDTESQVSSLLWNENYQELLSSHGYPKNQITLWSYPSMTKKAELVGHTGRVLQTTLSFDKTRVMSSAGDETIRLWNCFEL 1193
            + +N   N      +  +     N+N    D+  ++IL+     ++ K  N P   +  L         P  S+   R I +  +++LDAP   +DYYLNL+ WS S ++LAVALD+S Y+W  S+GDI  L   + P  YISS+ WI++G +LA+GT+S ++QLWDV+ +K+LR M  H++RV SLSWNSYI SSGSR G + H DVR  EH +  +  H+QEVCGL+W+P GR+LA+G NDN V +W        +    P+  FTQH+ AVKA+AWCPWQ +VLA+GGG  D+ IR WNV SGACL+ VD  SQV S+LW+ +Y+EL+S HG+ +NQ+ +W YP+M K AEL GHT RVL  T+S D   V S+A DET+RLW CFEL
Sbjct:   96 SKENQPENSQTPTKKEHQKAWALNLNGF--DVEEAKILR-----LSGKPQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWS-SGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP---SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 475
The following BLAST results are available for this feature:
BLAST of TCONS_00022346 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDC204.018e-11747.06Cell division cycle protein 20 homolog OS=Homo sap... [more]
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