|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022335 ID=TCONS_00022335|Name=TCONS_00022335|organism=Clytia hemisphaerica|type=transcript|length=823bp
CGacaattataagaactttaacGATGGAATGTACCAACTATTCTTGTTGA
CTGTTGTCAGTGATTACGATCTAGACACATTGGTGGGCATGAATAAGGCT
AAAGCGCAAGTAGGCGTCGCTTTCTACATCATCATTGTGAGTGTCATTTT
CTTGAACTTATACGTTGCATTGTTATCGGAGACTTTCGTTCGTGTGTACG
GTAATGCGACCGCCATGTCGTTGGTGAGTAAAGCCAAGAAAATGTTGAGC
ATCGAAATCGCTTCAAGTCATTTGGAAGACGCAAGGGAAGACCATTTATA
TAAACAGTGCAACCCACTGATAGTTGCCCTTGACAACGAACAATTTGAGT
CAACACAATCCACTAAAGCGATTGCCATCAACGCCAAGAAGCGGATTAAA
GGTTTGGCACTCTCTTTGAGAGGGACCGGGTACGAGGCGACGACCATCAA
CAAAGACTTGAAGTCAACTCAACTCAAGAGTTTTCACAAGAGTACAGAGG
GACCAACTGCGAGCTCCCTCAAGTCATGTTCTTAGCAAGAGAACAGTTCA
ACAATCCCTGGTTCAAAACCAAAGTGGCCAAAGAAAAACTGATGCAGAAA
AAGACGAAAGCAATGATTGAAGTTCCCATTGCTTTTTCCAGAATGGGAGA
AGCAATAGCTGACCATTTCAATCAGAGCTTATTGccttcaaaaaatcgaa
ataaaaaaccTTAAGTTTTACTTAAAAGTTTctcttttaaaaagttttat
attATTGAACGTTTTATGTTAAGAAATTTTCCATAGATTTTTAtagaaag
aatgaaaaaaacctAGAATTGAG Run BLAST on NCBI transcript from alignment at sc0000411:164202..165701- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022335 ID=TCONS_00022335|Name=TCONS_00022335|organism=Clytia hemisphaerica|type=transcript|length=1500bp|location=Sequence derived from alignment at sc0000411:164202..165701- (Clytia hemisphaerica)
CGACAATTATAAGAACTTTAACGATGGAATGTACCAACTATTCTTGTTGA
CTGTTGTCAGTGATTACGATCTAGACACATTGGTGGGCATGAATAAGGCT
AAAGCGCAAGTAGGCGTCGCTTTCTACATCATCATTGTGAGTGTCATTTT
CTTGAACTTATACGTTGCATTGTTATCGGAGACTTTCGTTCGTGTGTACG
GTAATGCGACCGCCATGTCGTTGGTGAGTAAAGCCAAGAAAATGTTGAGC
ATCGAAATCGCTTCAAGTCATTTGGAAGACGCAAGGGAAGACCATTTATA
TAAACAGTGCAACCCACTGGTAAGGAGATATGTATTTCATTCTTTGTCTA
TATTCTTATGAATCTGCGAAAAACAGTCCAATCTCATTTATTACGACATC
AAATAAGACGCACAACGAGGGTTAGCGTAAGAGGTGATCATTTGATCCTG
GCCCTATAGGCAGCTAGTAGAACCTATTAGACAACTCACATCTCATTTTT
AAGGCCGGTTTCCTCGCGTAAAAATTAGCAAAAGCTTTTTGTCAATCGTT
TTTACCTGTAGAAAAAATTACGTCATTAAAAAAGTTGAAAGAAGTTCAAC
TTTTTTAAACCGTTACGTCAGATTTGCCCAATGACCCTACAAAAACGTTA
AAAAGTTTTCGTTCATTTCGCGCGAAAGTGGTGACCAGCATTTAAAAGCT
CTTTTATTTACCACCTTATTAACGACAGATAGTTGCCCTTGACAACGAAC
AATTTGAGTCAACACAATCCACTAAAGCGATTGCCATCAACGCCAAGAAG
CGGATTAAAGGTTTGGCACTCTCTTTGAGAGGGACCGGGTACGAGGCGAC
GACCATCAACAAAGACTTGAAGTCAACTCAACTCAAGGTGAGAGAAATTA
ATTACAATAAAACTTTTCAGTTAGTGACCTAAACAAACTTCTATCGGGCA
AAATCATTGGAGAAATAACTCCTATTGAATCTTTGACTGTTCCATATTTC
AAAGCTTGTTTCTGAAGTTCTTTTCATTGGACTGAAGTGTTGAGATCGTG
CTTTTTATATTCAAGGTTTCTCTTGACTTTCTCATGAGCACTGCTTACTG
CACCAGGCACCCTGCACCATATATATATTAATGATTCCTTTCTTTCAGTA
TAAAGAGTTTTCACAAGAGTACAGAGGGACCAACTGCGAGCTCCCTCAAG
TCATGTTCTTAGCAAGAGAACAGTTCAACAATCCCTGGTTCAAAACCAAA
GTGGCCAAAGAAAAACTGATGCAGAAAAAGACGAAAGCAATGATTGAAGT
TCCCATTGCTTTTTCCAGAATGGGAGAAGCAATAGCTGACCATTTCAATC
AGAGCTTATTGCCTTCAAAAAATCGAAATAAAAAACCTTAAGTTTTACTT
AAAAGTTTCTCTTTTAAAAAGTTTTATATTATTGAACGTTTTATGTTAAG
AAATTTTCCATAGATTTTTATAGAAAGAATGAAAAAAACCTAGAATTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022335-exon-sc0000411-1575043694:165383..165701 | TCONS_00022335-exon-sc0000411-1575043694:165383..165701 | Clytia hemisphaerica | exon |
| TCONS_00022335-exon-sc0000411-1575043694:164815..164973 | TCONS_00022335-exon-sc0000411-1575043694:164815..164973 | Clytia hemisphaerica | exon |
| TCONS_00022335-exon-sc0000411-1575043694:164202..164546 | TCONS_00022335-exon-sc0000411-1575043694:164202..164546 | Clytia hemisphaerica | exon |
| TCONS_00022335-exon-sc0000411-1510915933:165383..165701 | TCONS_00022335-exon-sc0000411-1510915933:165383..165701 | Clytia hemisphaerica | exon |
| TCONS_00022335-exon-sc0000411-1510915933:164815..164973 | TCONS_00022335-exon-sc0000411-1510915933:164815..164973 | Clytia hemisphaerica | exon |
| TCONS_00022335-exon-sc0000411-1510915933:164202..164546 | TCONS_00022335-exon-sc0000411-1510915933:164202..164546 | Clytia hemisphaerica | exon |
| TCONS_00022335-exon-sc0000411-1491911889:165383..165701 | TCONS_00022335-exon-sc0000411-1491911889:165383..165701 | Clytia hemisphaerica | exon |
| TCONS_00022335-exon-sc0000411-1491911889:164815..164973 | TCONS_00022335-exon-sc0000411-1491911889:164815..164973 | Clytia hemisphaerica | exon |
| TCONS_00022335-exon-sc0000411-1491911889:164202..164546 | TCONS_00022335-exon-sc0000411-1491911889:164202..164546 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000411 | supercontig | sc0000411:164202..165701 - |
Blast
The following BLAST results are available for this feature:
|
