TCONS_00022333 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00022333
Unique Name	TCONS_00022333
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1861

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000411:159611..163990-

transcript sequence

>TCONS_00022333 ID=TCONS_00022333|Name=TCONS_00022333|organism=Clytia hemisphaerica|type=transcript|length=1861bp
CAGGaataaatgaacaaaaataataaagaaataaaGTGAAGAGGGGATGT
ATTTCCACAAGTACAAAAGCGAAGCGGATGCTATCCTTCTGAGAGAACAA
CAAGAAGAAGATGGAAGCGCAATCAACAAAACTACCAAAGAAACGGAGGA
TAGTTTCAACTTATCATTTGATATTCATGAGGAGCAAAGCGAAGAATCTT
TCGATGAGAGTCAAGAGGACCTGGATCAGTTGATTGGGCGGCGCTACATG
AAGTGTGGAGCGAATGGTATTGCACAGTTGAGTGAGAAGTTATTGAATGA
AGACAACAAAGAGAATGACATCCCTATCTTGAAGTATTTCGCTCAACTTC
ACATGAAGAATTCTTTCTCTTTTGAATTCATCGGTGGATTACTGGAAGGA
CAAGCAGATGTGAACATGCGTGACGAATACGGACAAAGCCTTTTACACGA
AGTGGTTCGTGAGTGGCACACTGACGTCGCTCAGTTCCTCTACAACAGAA
AGATCAACATTCATCAAACTGATCGCTACGGGCGGACGCCCCTGATGGTG
GCGGCAGCTAGTGATAACGATCTGATGGTGAAATGGCTCCTTCAACGCGG
TGCAAAAGTTTCCGTCAAATGTAAGAGACCAGAGAGATACGAAGCGATTC
ATTACGCAGCGGCTTTCGACGCACCCAAATCTCTAAAAGTGTTGATACAA
CATGGTGTGCATCCTGATCGACGAAATGCTTTCCAAGAAACACCTCTCTT
CATTGCCGCCAATACTGGTTCAGTTCGTACATGCAAGTACCTGTTGGAGA
AAGAACTGCCAGCTTGTACGTACACAAGTTATGGAGCCACACCGCTTGAA
ATGATCTGTGCTAAGATGCCGCTCGANACACAAGTTATGGAGCCACTCCG
CTTGAAATGATCTGTGCTAAGATGCCGCTCGACATCGCTCTCAAAGCACT
CGATCAGTGTTTCTTGGCCAATCAAAAAGCAAACACCAATATGGTTTATT
TGTCATCTCTGACTAAAAAACGTTGGCGACAATTGTCCGAACTTAACAAT
GTTCCCATGGAAAAACCGACAACTCGTCCCGTGCTAGAGACCATAGTGGA
GAAGAACGACTTCGGATTGATCGAACATCACGTGATACAAGAATACATTA
GACAAATGTCACGTGTGTTCGGTGATTTTCACATCACCATCAACCTTCTG
TTCAACATCGTCTACACGTTGGTGTGGACCATCGAATGTTCCTTACTCAA
CCTCAACAATCAAGCAGAAGACAAGAACGATGCATTTCGCATCGGAAAAA
TGGTATTGACCGTCATTGGCTTGTTGATGACTGTCCTGCTAACTATCAAG
TTGAAGTGGGAATACAATGCAGACCACGTGTTATGGAAAAAGCATAGGAT
GGCGGCCGAACAGGCGTTAACAAGGCGGTTCGATCATTGTCACCCTTCAT
GGGAGAAAGAGAAGATGTTACTGATCAATGAGATGGAACAGATAGAAGAT
GACAAACCATTGTTTTGGTCTGACAGATGGGTTTGGATAGAAATATTGAC
GTTACTAACATCTTATCTTCACGTGTTCGTCAACATCCTATGGTTCGCTA
ATCCCAGTCACGTGATGAAAGTCATCAACGTTTATTACAATGTGTTGTTC
CTGGTCATTGTATGGCTTCACTCGAACAGAAGTTTGGTCTTCTCGCCCTC
CATTGGTCCTTTCATCACTATCCTGGTGTATTCGACCAAAGCTGTGGTGC
AGTTCGCTTTCTTGTTCGCTGAATTCTTCATCCCGTTCGTTTGTGGTTTT
TATGTCATGTTCGGTGGTGTTCGAAAACGTAAGTTAATCAATGGACAGAA
CCCTGGTAGAG

Run BLAST on NCBI

transcript from alignment at sc0000411:159611..163990-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00022333 ID=TCONS_00022333|Name=TCONS_00022333|organism=Clytia hemisphaerica|type=transcript|length=4380bp|location=Sequence derived from alignment at sc0000411:159611..163990- (Clytia hemisphaerica)
CAGGAATAAATGAACAAAAATAATAAAGAAATAAAGTGAAGAGGGGATGT
ATTTCCACAAGTACAAAAGCGAAGCGGATGCTATCCTTCTGAGAGAACAA
CAAGAAGAAGATGGAAGCGCAATCAACAAAACTACCAAAGAAACGGAGGA
TAGTTTCAACTTATCATTTGATATTCATGAGGAGCAAAGCGAAGAATCTT
TCGATGAGAGTCAAGGTAAAATGTCCCTTCCATTAGAGGGGCCTGGGAAG
TTTATGTATGTGTGTATTTCATAAGACGGAGAAGGTCAGCTTAAGATTTG
TCTGATACTGATCAACTGAGGACTTTTACTGAAGACACTTTTACCGGCCT
CCATTATTTGGGTCCAAACTGTGGTTTATCACAAATCGCTTAAGCCACTC
CGCCATCCTCGAAAGTGCATAAACTCGATCATGCTTCTCAGGGAGGTCTC
AGTCTGCATAACCAATTATTCAAGATATCTCAAGAAACAAACAGAGAGAT
CATTAAACTTTACGAAATTTCCTTCATAGAGGACCTGGATCAGTTGATTG
GGCGGCGCTACATGAAGTGTGGAGCGAATGGTATTGCACAGTTGAGTGAG
AAGTTATTGAATGAAGACAACAAAGAGAATGACATCCCTATCTTGAAGTA
TTTCGCTCAACTTCACATGAAGAATTCTTTCTCTTTTGAATTCATCGGTG
GATTACTGGAAGGACAAGCAGGTAATATATACATATATACAGAGGGGAGT
TGTATGTGGGTTGCAAAATGAAATGATTTTTTGACAAGCTTGTTATACGG
GAAAATCCATTAAAAGAGGTGGCCTTACAACCATGACGAGTCCATATGGT
GGTATTTTATCCCAAGAGAACATCCAAAAATCGTCATATCAACAGAAAAG
GGTAATGATTCCGTTCAGACTTTGCCCTTTTAATAAAGTTTTGCGTCATC
ATTAATACAACCTTTCTTTGCAGATGTGAACATGCGTGACGAATACGGAC
AAAGCCTTTTACACGAAGTGGTTCGTGAGTGGCACACTGACGTCGCTCAG
TTCCTCTACAACAGAAAGATCAACATTCATCAAACTGATCGCTACGGGCG
GACGCCCCTGATGGTGGCGGCAGCTAGTGATAACGATCTGATGGTGAAAT
GGCTCCTTCAACGCGGTGGTATGAACTATTGAAATATTATCATTTTTGAT
AACTTTCTTTTCAACACGTCAAATGGCAATTTGTAGAGCTACTAATTTAC
TTATATAAATTTTTACTTTTTTGGAGCTATAAACGGCTGGAGGACTGACC
TCTACCGGACTTGCTTTGGACAAAGGTCTAATAATAACATGGCCCAATCT
CATAACTGTTTACTCGAAAAGAATCCCAACCACCCGACCACAACCTTCTT
TCGGCTTCTTTCTTCAGCGTGTAGAAAAGGCTCAAACAAACAACCACTTA
ATGAATTCTTCTATCATTTTACAGCAAAAGTTTCCGTTAAATGTAAGAGA
CCAGAGAGATACGAAGCGATTCATTACGCAGCGGCTTTCGACGCACCCAA
ATCTCTAAAAGTGTTGATACAANATTTTACAGCAAAAGTTTCCGTCAAAT
GTAAGAGACCAGAGAGATACGAAGCGATTCATTACGCAGCGGCTTTCGAC
GCACCCAAATCTCTAAAAGTGTTGATACAACATGGTGTGCATCCTGATCG
ACGAAATGCTTTCCAAGAAACACCTCTCTTCATTGCCGCCAATACTGGTA
AGATTTTAATCATTTGATTGCTTATCAAAGTTACGATTGAACTTATTAAC
ATCCGTAATGCACACTTCTCAGAAGAAAGAGGTTGAAACATGTGTCAGTT
ATGTGAACACCGAGGCTATTGATTCTTCAATGGCATGAAATAAAGATATC
TAGGAAAAAATTTAAAATTTCTAATAATGAAACTTTAGCGAATTTATCAA
GCAAAAGACTTCATTTCAAAGAATAAAAATTTGAAAACGGTGTAAAGGAA
TTTAGTTTGATTTCCAATTTTGACCAAATGTGAAAGTTTCCACCTTTACC
ATAACCATCTCTTGAACACCAGGTTCAGTTCGTACATGCAAGTACCTGTT
GGAGAAAGAACTGCCAGCTTGTACGTACACAAGTTATGGAGCCACACCGC
TTGAAATGATCTGTGCTAAGATGCCGCTCGANACACAAGTTATGGAGCCA
CTCCGCTTGAAATGATCTGTGCTAAGATGCCGCTCGACATCGCTCTCAAA
GCACTCGATCAGTGTTTCTTGGCCAATCAAAAAGCAAACACCAATATGGT
TTATTTGTCATCTCTGACTAAAAAACGTTGGCGACAATTGTCCGAACTTA
ACAATGTTCCCATGGAAAAACCGACAACTCGTCCCGTGCTAGAGGTGAGA
GAATTCCGATTTATTTCTTGGAATTTTTGTGTTTATCAAATCAAAAATCT
CTTAAACATTTTACACAAGCCCAATCTCCGAGTCTTCTGATTTTCAGCGC
TTTTGTCAAAATTCAGTCATTTTTGTTGACATCATTTTTTAATGCTTCTA
GGTGTCTAAACTTTATGTTATATTTTTTTGCCAACCGCACGAGACCTTAT
TTTTTGACTTGCTTAACCTGTGAAGCTAGATTTCAATCAGTTTCGCTTAG
ATGCGACACACATCTTCCCAAGTAGGAGACTCTGCCTTCAACCTGGCCTA
AAATAAAGTAAAAAGTATTTCTTCAACTTGTAGACCATAGTGGAGAAGAA
CGACTTCGGATTGATCGAACATCACGTGATACAAGAATACATTAGACAAA
TGTCACGTGTGTTCGGTGATTTTCACATCACCATCAACCTTCTGTTCAAC
ATCGTCTACACGTTGGTGTGGACCATCGAATGTTCCTTACTCAACCTCAA
CAATCAAGCAGAAGACAAGAACGATGCATTTCGCATCGGAAAAATGGTAT
TGACCGTCATTGGCTTGTTGATGACTGTCCTGCTAACTATCAAGGTACGA
AACCCGATGTTGCTTCTTAAAGTAGGTAGCTCTGATTGGACGAGATCATA
GTTGCACAGAGACTATGAAACGACTTTAAAAAACATTTTGGGACTACTGG
ACCTGCTTTATAGGATTAAAGTTACGCCATTAGCACAGATTTAGTTTTAG
TCCCTCTAAAATAACACGAGCGTTCTAAGATTTGGTATAGAGCACGCACT
AACTACAAAACGTTTGAACATTTTCAGTTGAAGTGGGAATACAATGCAGA
CCACGTGTTATGGAAAAAGCATAGGATGGCGGCCGAACAGGCGTTAACAA
GGCGGTTCGATCATTGTCACCCTTCATGGGAGAAAGAGAAGATGTTACTG
ATCAATGAGATGGAACAGATAGAAGATGACAAACCATTGTTTTGGTCTGA
CAGATGGGTAAGTGACAAATGCTCTGTCATCAACAGGTTTGAGGCTGATT
CTGCTGTTCTAAAGCTTTCGCTGGAAAGATTTGTATACAGAAAAAGTGTT
TCTGCAAAGACTTTCTCTACACGAGTGAATGCGTGAATGAATGAACTGAT
ATGTTCTCAGGTAATAAGAACGAAATACTCTTCATAAGATAGAGCCCTCC
GAATGTACTCCGTGCAGACACTGCAAGTTTAACAGACGCGAACTGCAAAG
CCATGACGTATACCATGACACTCGAACGGCACTGGGAGAGCGATGCTCAC
GCGAGGCCGAACCTTATAAGTGCCAAAGCACGTCACGATACCTGTCTAAT
GTACCCACTCTTGAATCAGTACCCGATTCCCCTCACGTGGCATGGGTTGA
CCCGGGCGAAGGTATCACTCGCAAAGTGAATCGTATAGAAACGGTGTGTA
TTAAACTCAGGCCTCCCATGCGGGAGTCGAGGATGATAACCACTATACCA
CTATGTCTATACTCTTCAGAAGATAGCCAAATAATCAACGACTTTAAGTA
CTGTTGTCAATCGGCTTAACAGAATATGTTAGAATAAGAAGAACACCTGA
TGGGTAATTATTTCTGTTGTATTGATTAATATGTTCTCAAATTGTTCAGG
TTTGGATAGAAATATTGACGTTACTAACATCTTATCTTCACGTGTTCGTC
AACATCCTATGGTTCGCTAATCCCAGTCACGTGATGAAAGTCATCAACGT
TTATTACAATGTGTTGTTCCTGGTCATTGTATGGCTTCACTCGAACAGAA
GTTTGGTCTTCTCGCCCTCCATTGGTCCTTTCATCACTATCCTGGTGTAT
TCGACCAAAGCTGTGGTGCAGTTCGCTTTCTTGTTCGCTGAATTCTTCAT
CCCGTTCGTTTGTGGTTTTTATGTCATGTTCGGTGGTGTTCGAAAACGTA
AGTTAATCAATGGACAGAACCCTGGTAGAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_012523	XLOC_012523	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000411	supercontig	sc0000411:159611..163990 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0429513	0.0837685	0.0972632	0	0.0868833	0.0686563	0.0552206	0.0258484	0.180971	0.0672485	0.0870308	0.200237	0.15711	0.0148328	0.109751	0.0654332	1.46707	0.743589	0.0684872	0.143334	14.6201	17.0254	3.4792	8.47917	26.0798	13.0675	0	0	0	0.0242854

Blast

[Close]

BLAST of TCONS_00022333 vs. Swiss-Prot (Human)
Match: ANR28 (Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Homo sapiens GN=ANKRD28 PE=1 SV=5)

HSP 1 Score: 92.0485 bits (227), Expect = 3.892e-19
Identity = 64/177 (36.16%), Postives = 91/177 (51.41%), Query Frame = 2

Query:  332 KYFAQLHMK-NSFSFEFIGGLLEGQADVNMRDEYGQSLLHEVVREWHTDVAQFLYNRKINIHQTDRYGRTPLMVAAASDNDLMVKWLLQRGAKVSVKCKRPERYEAIHYAAAFDAPKSLKVLIQHGVHPDRRNAFQETPLFIAANTGSVRTCKYLLEKELPACTYTSYGATPLEMIC 859
            K+   LH    S S E +  LL+  ADVN RD+  Q+ LH          A+ L     N++ +DR GRT L  AA S +  MVK LL RGA ++   K+  R  AIH+AA     + +K+L+ HG     ++    TPL  AA++G +   KYLL+  +      +YG TPL + C
Sbjct:   73 KWLTPLHRAVASCSEEAVQVLLKHSADVNARDKNWQTPLHIAAANKAVKCAEALVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAFDKKDRR--AIHWAAYMGHIEVVKLLVSHGAEVTCKDKKSYTPLHAAASSGMISVVKYLLDLGVDMNEPNAYGNTPLHVAC 247

The following BLAST results are available for this feature:

BLAST of TCONS_00022333 vs. Swiss-Prot (Human)

BLAST of TCONS_00022333 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ANR28	3.892e-19	36.16	Serine/threonine-protein phosphatase 6 regulatory ...	[more]

You are here

TCONS_00022333 (transcript) - C. hemisphaerica