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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022329 ID=TCONS_00022329|Name=TCONS_00022329|organism=Clytia hemisphaerica|type=transcript|length=1691bpRun BLAST on NCBI protein sequence of TCONS_00022329-protein >TCONS_00022329-protein ID=TCONS_00022329-protein|Name=TCONS_00022329-protein|organism=Clytia hemisphaerica|type=polypeptide|length=517bp LRFHFKTCLSVLKKKNIYVLKRFGKVKKMSYNSKTKHLRLLEDKLKGKVARun BLAST on NCBI transcript from alignment at sc0000411:106340..116217- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022329 ID=TCONS_00022329|Name=TCONS_00022329|organism=Clytia hemisphaerica|type=transcript|length=9878bp|location=Sequence derived from alignment at sc0000411:106340..116217- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000411:106340..116217- >TCONS_00022329 ID=TCONS_00022329|Name=TCONS_00022329|organism=Clytia hemisphaerica|type=CDS|length=21756bp|location=Sequence derived from alignment at sc0000411:106340..116217- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022329 vs. Swiss-Prot (Human)
Match: HAUS3 (HAUS augmin-like complex subunit 3 OS=Homo sapiens GN=HAUS3 PE=1 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 3.559e-28 Identity = 121/456 (26.54%), Postives = 226/456 (49.56%), Query Frame = 1
Query: 223 VVKLEAALGSLIKNVEKLAELYQKNDDPLRSDKSHPFLYKQQ--IDEVQLEEESFTNSLALYTKKQFFEGIAELAGSKDQTKYDFLDTSKPETLLFKGERDEIKAKDKQELKRLQIQYQESEIKRLKSEMTLENLKRKIKIAESQVKSLN---LGYSTVDADINKNTKLTVMNEKSRKALQDDLDEQMIPLLNELQQLHGIKVLEGNYDLKIFRQDYFLSKQSEVINQLLLQCSRNYFLTMMYEIELKEHRKIYHLIESSRTLLASEIKKISSRIALLRDPVLQTNNLNKETISSKDEFMNRIYDALVPVEERDENELYRTYSSLIDRXXXXXXXXXXXXHKCKDLETQKDKYFDTLESSIITIQKLVGYEEAGLQSQMEDMVGHLEQDLTLAEVQVN-------DIIKDVMAKKKLLATDSLKELERSVFPNFFNDPTRLKRTM--TEIQSRVQA 1548
+ K+ L +L V +L ++ ++ ++P ++ Q +++ +EE T +L LYTKKQFF+GI E+ S ++ + LD P + EI + + E+ RLQ+ Y ++ + + + + ++K IK AE + SL + +DA I+ T + EK ++D + ++ E QL + V++G++DL+I +QDY+ ++Q V+NQL+ Q + L + YEIEL++HR IY +E+ L+ + ++ +L DP + + TI +KD +R+Y L E + EL+ T+ +L + ++ L ++ + + + Q+ +F + + + + Y + G Q + D L + E Q+N DI+ DV K+K LA + L ++ER + F D LK + E QS+++A
Sbjct: 159 ITKISNELQALTDEVTQLMMFFRHSN---LGQGTNPLVFLSQFSLEKYLSQEEQSTAALTLYTKKQFFQGIHEVVESSNEDNFQLLDIQTPSIC----DNQEILEERRLEMARLQLAYICAQHQLIHLKASNSSMKSSIKWAEESLHSLTSKAVDKENLDAKISSLTSEIMKLEKEVTQIKD---RSLPAVVRENAQLLNMPVVKGDFDLQIAKQDYYTARQELVLNQLIKQKASFELLQLSYEIELRKHRDIYRQLENLVQELSQSNMMLYKQLEMLTDPSVSQQINPRNTIDTKDYSTHRLYQVLEG--ENKKKELFLTHGNLEEVAEKLKQNISLVQDQLA-VSAQEHSFFLSKRNKDVDMLCDTLY-QGGNQLLLSDQ--ELTEQFHKVESQLNKLNHLLTDILADVKTKRKTLANNKLHQMEREFYVYFLKDEDYLKDIVENLETQSKIKA 598 The following BLAST results are available for this feature:
BLAST of TCONS_00022329 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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