TCONS_00022322 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022322
Unique NameTCONS_00022322
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length927

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022322 ID=TCONS_00022322|Name=TCONS_00022322|organism=Clytia hemisphaerica|type=transcript|length=927bp
CCCGTATTGAGAAGAAGTGCACCGCCATTCAAATGAAAAGAAGATTATTC
CAGACAGCAAGAAAGaacagaaaattattattttctgtCTAAATGTCTGA
TGGTGCAGCTATCAAGCAGAGAAAATAATGGCAAAAAGTATTCTATTTGA
TTTAAAAGTTTCAACACTTCTTGGCATAATTGTGACAGTGGTCGCCATGT
TGGCAATTTACAAAGCTTTCACCGGCTATCTCTTCCCTACACTAAGTGCT
AAAGAGACTGCTAATACAAATCTCCTACATTCTAATCCTCAAAGTCCAGA
AAAAGCGAGTTCCATTTATGATTTTTCTGCATTGGATATCGATGGTAATA
TAGTGAATCTTTCCAAATACAATGGATTGGTCACCTACATTGTCAATGTT
GCTTCAGAATGAGGCTTGACGAAGACCAATTATGCTCAAATGATCGAATT
ACAAAAGCGATATGGTGAGCAAGGTCTTCGTGTACTCGCATTCCCATGCA
ATCAATTTAATGGACAGGAACCAGGCGACAACAAACAAATCAAAGAGTTT
GCTGCCAATAAAGGGTGTAATTTTGATATGTTCAGCAAAATTAATGTGAA
TGGTGCCGGAGCACAtcctttgtttatttatttgaaaagtaaacaacaTG
GCATGTTGACGAATGACATTAAATggaacttttccaaatttctgTGCAAT
CGACATGGTGTACCAGTGAAACGCTACTCTCCAACTGATACTCCTTTGAA
CGCCGAAAATGATATCAAAGCTGAACTTAATAAGCAATGATTTCGTAATA
AGGCCAAATGGTTTTTGGAAAGGAGAAAAACTTgatatgaattatttttt
aaaagataacctcaatgaattatttttttgtttattccaTTGCTTCTTTT
TTGCTACTGCTTATGATGGTAAAACTC
Run BLAST on NCBI

protein sequence of TCONS_00022322-protein

>TCONS_00022322-protein ID=TCONS_00022322-protein|Name=TCONS_00022322-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MIELQKRYGEQGLRVLAFPCNQFNGQEPGDNKQIKEFAANKGCNFDMFSK
INVNGAGAHPLFIYLKSKQHGMLTNDIKWNFSKFLCNRHGVPVKRYSPTD
TPLNAENDIKAELNKQ
Run BLAST on NCBI

transcript from alignment at sc0000411:56200..66950-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022322 ID=TCONS_00022322|Name=TCONS_00022322|organism=Clytia hemisphaerica|type=transcript|length=10751bp|location=Sequence derived from alignment at sc0000411:56200..66950- (Clytia hemisphaerica)
CCCGTATTGAGAAGAAGTGCACCGCCATTCAAATGAAAAGAAGATTATTC
CAGACAGCAAGAAAGAACAGAAAATTATTATTTTCTGTCTAAATGTCTGA
TGGTGCAGCTATCAAGCAGAGAAAATAATGGCAAAAAGTATTCTATTTGT
AAGTTACTTGATAGTTTTTGTTTAGAGAGATAGCATGTAAAGGTGTTGCC
ATTTTGCTGTTTTTAAACTTATTTTATTCCAGACCCCAGCAGAGCCAGAC
GTAATTAGGGGCCGTCGACAAACGATTTTCCTTTTTTTTAACGGCTTCTG
GCCATAAGGGGTGGGAGGCGGTCACTGCAATGCCGTTAAAAAAGTTAAAA
AAAAGAAGGGAAAGTCTCACTTACAAATTTCATCAGTCCAAAAAGTAGAA
ACATGTGAAGAAAGGCTAAAGACCAAAGCAACCACACGACATTCACCTTT
ATATTCCCAATCACCAATTAATGCTTCGACGAAAAAAAATGACTGGTCAC
ATGCAGTGTAGCTGGAACCTCGATATTCCAGGATTAGAAAAAGCTATACC
TGTTATCTTTTTTCTTTAAAGAATCAACAAGCCATCAACTTCGATAAATT
ACACACAATTCCTCCAAAACTCTTAAAATTATCTGCCATTATGACTTTCT
TGAAGCCGTTCCGAAAATAACCAATCGGGTTAGGTATCGGAATTCCTATG
GGAGTTCTTTTCCAAGTTTTGTAAAATAGCTAAGTCTGCAAAAAAACTTT
TCCCGGGGGTTTGAGGAATAAACAGAACTGTTATCATTAGTTTTTACTTA
ACCATATATTTAAATTTGCGCTCAAAAATATTCAAATGAATATGTTAATA
ATATTCAATATTCTATTTGTATCTCTCAGAAAATAAACACTTACAGAACA
ACATAGTTTATCATTTGAAATACCCCCGTGTTCGGACCATTCTATCGTGG
GCGCAAAATAGGGCGGAAACTAAGAAGCACCCTCAGTGCAAGATTGCCGC
CTCATCTTTATTCGCCCGCGCGAAAACGTNNATCCTGTGAAGATGAAAAA
ATTTCTGCTATGCGTTTTTTTCGGAACGCTGAAAAACTCTAATTTCGATC
TTCCTTAAGGTAAAAAGGTTGCGAGATTTGGGTTAGCGAGGCAAAAATTG
CTAAAAAACTGGTAAAATCGTAATCCTCAAAAATCGAAGTTCCAGCCTCA
CTGACATGACGAAAGTCGGCAATTTTTCCCTCCGTCTCAGTTGACTCCTT
GCTCCACCCATCCCGCCCTGACTTGATGCGGGTGGGCGATTTGCGCTAAA
TCTGTACCGTGTCCCGTCCGAAATCATGAATAATAAAGTTCATTTTTTAA
ACATAACTCTACTTTTCTATGACAGTCTATAGCCTATATTTCATGAAAAT
GTACCTTGACACCACCTTTTAAGGCCTAATGATAAAGATATAGGGGCTCA
TGGAGCTGTTAGAGCGTATGAAAATGGTAAATTTGTGGTAAAAAAAAATC
AAAACTAACTTGCACTGTAGAGAGTATCACATATTATAAGGGTTGTAACA
GGTGATATTTAAGTATCACTAAACTTAGGTGAAATCCTTTTTTTGTTTCA
TTCTTTTGATTGGCATGTACTGTAGATATTGAAAATGATTTCGGACGGAC
AAAATTTGTAAAACCAAAGGCTAGAATACATCAGAAAAATGTATTGAGGA
AGTAGTCCCGTCCGAAATCATTTTCATAAAAATCTGTTTTATTTCAAGTT
TTGCTAAACTTTTTCTTTCTACATATATACAAGTAAATATACTACTATTC
CAAATAGAAAATACTTGAGAATCTTCCACTCTTTTTGTTCCAGTAGTGGT
TTTAATACAAGACCTATTTTTACAGGAAAATTGTCCCGTCCGAAATCAAT
TCCTATTTTCAAGGTTAAAATAAAGGTATAAAAACTTACTTTAATTGGCC
TGTTTGAACATTTTTCTTACCAATAGGTCTTGCTAATAACTTCCTGAATG
TTAAACATTCATTTTATTACAAATTGAAACATATTTGAAAAGTTATCATT
TCGGACAGGACAAATGATTTCGGACGGGACATTTTTTCTAGTACCCCTGG
AATCAAATCTGAAGAGCTTTGAATCTTAGATTTACTCAATTAAAATATGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTC
AGCCATTCAAATCTTTCTACCCTGCAGAATTTCAGAAATATTGTCAATCT
TATTGTGATTTCGGACGGGACATTTTTTGGTGTCACTTCCAATCACCAAT
ACACTAGGACCTATAGAATGTTAACCTAATGGTAAAATCATACTTTTTGA
CAGGTTTTCAAACACAAACAGATTGAGCTTACTCTCAAACTTAAAAAACC
TTCAATAAACACTCTTTAAATAGGGGCAATGTGCAATGATTTCGGACGGG
ACACATTTCAGTGTCAAAATGGACGTAAACAGAAAATCACTGCTAGAGCA
AGATGGAAAAAAGGTTTCAAAACACTTTTTTTGTAGAAAAACACATAAAT
AAATTGCCTATATGGAAAATCAAAATTCCAGGTCTTATACCTTCCTGGAA
AGAAAGTGCTACCATAAAACTGAAGCACTTTTTTGCTAAAAATTGCCAAA
ACAAGGAAAAATTGACACAAAATTTATGATTGCAGANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTTTGCAGAAAGTGTACCATTACCAAGCTGTATCTGAT
GAAAAAAGAAAAAAATCATTAACACTTAACCTTAATGAGATATATGCAAA
AAATGATTTCGGACGAGACGGTACAGATTTAGTGCAAATCGCCCGGGTCT
TGGAGTTTCAAAATTGAAAGGTCACGGCTCAAAACCACATGTTTATTCCG
TGCGAAAAGAAGAAGTTTGAGGATTACGAATCGTAAGAACATGGCGGCCA
TGGACCAGTGAAAGTTACTTTTGAAGAATTTTTTTGGCCGCTAAGACGTA
GGGGGAAGGGGGTCTGAACCTTAACGGCCACAGGCCGTTAAAAAAAAGGA
AAGTCGTTTGTCGACGTCCCCTTAATCGAACAGTTCGATTTACCGAACTA
ATCGAACTTTGTCGCACTTAATCGAACGACAAAAGTTCGATTAAATTCTT
TATTCAAACTTTTCAAAAGTTGCTAAAATTGTGAGTATTCGATTAAGTTC
AACAAAACATATTAAGTTCGACAAAGTTCGACAACGAGAAAGGCGGTCAT
AGAAAAATTGTTCTATTCGCGTCACCCGCCCGCATCAAATTTTACTTTTA
AAGTATAGCTTTTTTCTCAATTGCTCTGACTGAAGACCATCGAAAAATTG
TTTTGCTCGCGTTACCACCCGCCCCTGAGTTACTGGCGTGATTAAAAAAA
AAACGGGAATGTTTTTGACCGCCCGTCCGCCCGCCCGCCCGCCCGCATGC
ATTTTTAACACCCGTTGCGACGCGAACAGAGCATTTTTTCGATGACCGCC
AAATGTTCGAAAAAATTCTACAAAAAACTCCGTTCGATAAAGCTCAACAA
CAAGAAAGGTTTGACAAATTCAACAAAAAACTCTGTTCGAAAAAGTTTGA
CAACAAAAGACCTCCTTCGGGTACTACCATGGACGGCCCTTGGGAGGCCT
AGCCGAGGTCCCAGGGGGTCCAATTGGCGCCCACTGTTCAGGGGGATGTG
AGGGTACACGTCTGCACCGTTGGGGGTCCTTCAAAGTTCCTCAAAGTGTT
CTCAAAAGCTGGCAAAATTTACGAAAAATGACCTCTTTTGGGTACCAGCC
CCGGTGGGACCAATCGAGGTCTCTACAGCCCCCCACAGCCCTTCAGACCG
CTTTGGATACCCTCTGCCTTGCTTTCCCTTGAAGCCAGCACCCTCCATCA
GTCATCCGAAGCCTTTAAAAGGCTTGGAAAGGCGGAAAGGCTTGAAAATT
GGTCAAAATTGGAAAAAAATGACCTCCTTTGGGTACCACTGCGGACGGCA
TCTGGGGGTCCCGGCCGATGTGCCGGGGGGTCCGATCGGTGTTCACTGGT
CAGGTGGGGGGTATGAGAGTACACGCCTGCACCATTGGGGGTCCTTCAAA
GTTCCTCAAAGTGCCGTCACAAGGCGGCAAAAATTGCCAATAATGACCTC
CTCAATTGAGGCTACTACACCCCTTTCTCACCAGGAAAAATCGCCGATGA
GACCAATTGAAGGCCTCTACAGTCGTCCACAGCCCCCATAGCCCTCCGGA
CTCCTTCGAATACACTCTGCCTTGCTCTCCCTCAAAGCCAGAACCCTCCA
TCAGTTAACTCCAAAGCCTTTAAGCTTAGAAAGGCTTGAAAATTGGCGAA
AATTGGTCAAAATTGGAAAAAATGACCTCCTTTATTTGGGTACCACCGTT
GACAGCCCCTGGAGGTCCCGGCCAGGGTTCCGGGGAGTTCGATCGGTGCC
CACTGGTCATGGGGGATGTGAGGGTACACGCCTGCACCGGTGGGGGTCCT
TCAAAGTTCCTCAAAGCGTCATCACACATGCGTTTGCGTAGGGTAAAATG
GCGAAATGCGAAAATCAATTTTGGCAAAATTTTTTTGAAAAATGACCCTA
CAAGATTTGACTACAGTATATCTTTTTATTCCATGAAGAGATTACTTTCA
AATAAAAAATATATTGACAATGAATGGGTAAGCTTTCTAGAAATCCAAAC
ATAAATTACATAGCTTTTACAAAAAATAGCACTAGGATCAGAAACAGTCA
AAAACCAGCTTTTTCCAATTTTCTTCGAGTTACAGGAATTAAATTCCTTG
TTTGTTTTGATCTGAAATTTTCAGTAGGGGTGGCCAACATGGTTCCCTTG
CTCATATCAGGGGGAGGGGCAAGACGGGGTAAAAGAATTAAAGTTTCTTA
GTAAAATCTTAATTATCACCCAAAAAAGTGCCTTTTTTTGTCCATATCTT
TTAGATAGATTGTCCCAGCCTTATCCCTCTTTCAGTAAAGCTTCCTATAC
CTTTTGTCCTTCAGAAAAACCAAAAATACTGGCCTTGATTGCTTGCTTTC
AGTTCCTGTAGCCAGTAGTGTGACCCCCTGTATTTCTATTTTAATTCGCA
CGGGTTTTTTAATAGAGATGTCACATGACTCAAATCCGCAGTCTTATTGG
ACTAGAGAAAGCGAAAGTGAAATCGTGCGATCTGATTGGATGAAAAAAAG
ACCGGGGGAGCTGGAAACGAATGGAATTCTCTAGAATTCTCATTCTAAAC
AAGATGGCGGCGAGAAAAGCACGTCTTTTGCTTTGGGCAAAAGGTTGTAA
ATTCTGGTTGATTTTACGGTTTTATCTTATCTTATCTCATTTACTTTAAT
TTGTAGAGGCTTCTTCAATGTTTTGGGGAAGGTAAGTCTGTAAAAGTTAT
TTGTTTTTCGGTGGAAAAAAGTGTTTAAAAAAGCATTTTTTGTGCTCAAG
GTTTATTTTTCTTCGCAAATTTTTGTCTTTAATCTTAAATAGATGAAGGA
GTATTTGACTGATGGCTATGATTTTTTCACAGAACATAGTAAAACTATTC
AGGAACTTAGACCATTTTACAGAATTTCAAAAAATCTGTTAGTTCTAGAG
ATATATTGAAAAGTTTAGACATGGGTAGTTCGCGTTCGTGTTTCGCATTC
CCAAACCAAACGCACGTGATCAAAAGCCGGCAAAAATTGGAAAATTGGCG
AAAATTGGGAAAAATTTGGAAAAATGACCGTATCATTTGTGTACCAGCGT
GGACGGCTCCTGGGGGTCCTGGCCAGGGTTCCGGGAGGTTTGAGCGGTGC
CCACTGGTCAGGGGGGTGTGAGGGTATACGCCTGCACCAGCAGGGGTGCT
TCAAAGTTCCTCAAAGTGTCGTCAAAGGCCGGCAAAAAGTGCAATCGAAT
TACGCGCAAGTGGAGCGGCCTTCAGTTGCTCGGGTTTTCTCAAATTTTTG
TTTGCTTAAACTTGACAAAGTTCGATTAAATTTGATTAGCTCGATTAAGT
TCGAATAATGTAATTGAACTAATCGAACTGTCAAGGTCTTTAAAAAAAGT
TCGATTAAGTTCGATTTCAGTAATCAAACTTTAAATCGAACTTTAAATCG
AACTTGGTATTTTGAGAAATTTGTGAGTATTCGATTAAAGTTCGACAACC
GAACTTAGTCGAACATTAATCGCCCAACAAAGTTTGATTAAGTTCGACAA
AGTTCGATTAAAAAAAACGTTCGATTGGTTCGATTAATTACGTCTGGCAG
ACCCGATCAATCGAACTTTTCGAACCAATCGAACAATCAAACTAATCAAA
CTCGATCGAAAGATTAAAGTTCGATTAAAATAATTAATCGAACTCTAAGA
TTTTTAACAAAATTGTGAGTGTTCGATTAAGTTTGATCAATAACAATGGG
TTGCGGTTTGATCAGTTTGACAGTGTAGACCTAAAGCTCTAAAACAGCAT
CTAATAACATGAAAACCAGAATATGTTTCTTCAGTGGGAATCAAAACTAT
AAAGTGCACTTACAAACATCACATTGTCAGATCTAACAAAATTAATAACG
GCACTGTCATCATTGACAATTCAGACAAACGATATTCTGTCAAGAGCCTT
GTAAAACATTCCAGAGGTTATGAGAATAACGTCAATTTGACGTTATGCGT
TGTCAACTTCCTTATTTAATCCTGCCACGCGTAAATTACTTTACCATAGC
TAATAAAAAGCCCCAGCTAAAAATATAACTCCCTGGTAAGAATCTTTGTA
TTCTTATCCTATAAGTATAATGGAACGGCCATTCTACGGAAATTGCTGTC
ATGTGACTTTTATCTACCGCGTGATACAAATCGCGCATTTTCATTGGATG
TTGGAAATTTATTTGTCACGTGACAAGAAGTTCTGACTTCACATTTAAAA
AAAATAAAATGGCAGAAGGACGTTTTTTCGATGTATATGAATTATGGAAA
GAATTCAGTTGATTTAAAGGTTTTTTCTTTTGTGTACCAAAAGATTCTAC
AATGTTGTGGGATTCTACAAAGTTTTTCTATTTTTCATGGAAAAATGAGC
TATAATGTCTTTGCTTAAAGTTTGTTTTTTCTTCGTGATTTTTTAACTTC
AATCTTTATTTAAAGTTTGGATATTTTATCAATTATCTTGGTTTTTTTCA
GGGTTCATTCTAGAACTATTTGGGAGGAGAGAGCTTTTCACAGATCTTAA
AAAGCTTTACTAATTCTTTAGATATAGTCAAAAGTTTAGACATTGCAGTG
AAAACTTATTTCTATGATCTAACATTGACACCCGCTTTTCCAAATCAGAC
AGGCGTGATGTTCTGTTCGCTTCATAAAATATCACCAAATCCAGTCGGTC
GGTCGGTAGCAAATGTTGTTGGATTTTTAATATTTGATAAATCCTGAAGA
ATACAGTCGGCAAAAAACAGAATCTCTTGCCGCCCTGTTTAAATTTGCTA
AGATAATTCCAGTGAAATGCGGGTTGTGTTGACCTTAAAACTGAACCTGA
TTTTCGGCCCTCCTGGATACCGGCTCTATCACGTCAGTGAATTTCAAGTT
GATAATTTCAATGAGGGTGGACGGGAAAAAACTCAAATTGGACTCAATGT
GGGTGAAGTAAACAAAAACTTGAAGTGAATGGTGATGTAGAAAAAGGCTT
AGCTATGGAAAAAATTTCCCAATATTATTGTGACTGGGCCAACTTGGTAT
TTATGTTTTGAAAGTGAGTCAGTCGGGTGACGCAAACATAACATATTATT
GATGGTCACCCAATCACATTGTTTTTTTACAACCAAATATCTGCATCAGC
AGGGCCAAGATTTTCTATTGCAATCACTTCAAATTCATAGACCAAGGACT
GAATTATTAAATATTATCTTGAGCAGGAACAAACTCCTCTAGGACAGGTC
AGGTAGCTCTAAAATACCCCTAAAATCAAATTTGTAGTGTTTTTGTGACG
TTGGTTTTTTTGAAAATTCTATAGTTTACTGGCCATAGTTTCAGAATCAC
CCAAAACCAATTCCTCATTTTGGTTTGAGAAAGCATGGCTTCATATTACT
GTACGAACTTTTTTAAGTGAAATGCCCAAAAAATTTTATCTTTTCTTCCT
TTTCTTTATGTTTGCCAATCCAGGGAGTCTTCATTTATATATCATAGGAA
AGCTCACAAAACCTTTTCTTCAAACTTCATTCATAGAATGACAAAAATGA
GATATTTTGCCCCATCATGCTAAGTTTTGGTCTTTTTTTGCAAGTACATG
ATGAGTACCTCTAGATACTTGATTCTTAATTTTGTGAAACTATCCAATGG
GCCTACCCTAGATCCCTTTCTAAACTTTCTTGCACATCAGCCCGTCCAAT
TGATTATTTCATCTTTTTAGGTTTATGGGAAAATTACTCAGCTCTAGAAG
TTACATTAAATAAAGTTGGAGAGCACTTTTTTAATTAAAAAAAGTTCATT
AGTATTTCTTGTTCCTTCGTAGGATTTAAAAGTTTCAACACTTCTTGGCA
TAATTGTGACAGTGGTCGCCATGTTGGCAATTTACAAAGCTTTCACCGGC
TATCTCTTCCCTACACTAAGTGCTAAAGAGACTGCTAATACAAATCTCCT
ACATTCTAATCCTCAAAGTCCAGAAAAAGCGAGTTCCATTTATGATTTTT
CTGCATTGGATATCGATGGTAATATAGTGAATCTTTCCAAATACAATGGA
TTGGTCACCTACATTGTCAATGTTGCTTCAGAATGAGGCTTGACGAAGAC
CAATTATGCTCAAATGATCGAATTACAAAAGCGATATGGTGAGCAAGGTC
TTCGTGTACTCGCATTCCCATGCAATCAATTTAATGGACAGGAACCAGGC
GACAACAAACAAATCAAAGAGTTTGCTGCCAATAAAGGGTGTAATTTTGA
TATGTTCAGCAAAATTAATGTGAATGGTGCCGGAGCACATCCTTTGTATA
TTTATTTGAAAAGTAAACAGCATGGCATGTTGACGAATGATATTAAATGG
AACTTTTCCAAATTTCTGTGCAATCGACATGGTGTACCAGTGAAACGCTA
CTCTCCAACTGATGCTCCTTTGAACGCCGAAAATGATATCAAAGCTGAAC
TTAGTAAAGAATAGCTAGTCTTCAGAGTAATTTCTTTTCAAAGAATTTTT
AATTTTATACTAATGCTAGGCAATTTATTCAATTAAAGTCATGTGAATTT
AATAATGTCTAGGAGATATTGACCTTGTAGCTTTAGACTATTTATGATGA
TAGAACTGTCAACTTTTTTGAGTGAGTTTTATTGGATTTTTATGTAGTCT
ATAGATGTTATTGGTGTTAATTTTCAACGAAAACAATGTTAAATTTTTAT
AAATTATTTCAGTTTTTTTTTTTCGTTTGTGTTGATAACATTTAAAAAGG
TCTGGTTGACAAGACAATCTTATTGAGTTACAAAAGTTTCTTTGCGCCTA
AAACAAAATTCTTACCAACGTTGAAAATAATAGCATAGATTATAGTTTAT
GGATTGAGTAAAAGATGTGTCACCATCCTACAAGAATTGGCAGGCATTTC
CAATGTGACAGGATTTTTTTAGTTCTAATCTGCGGCATATCTTTGTTTAT
ATTTCAGTCTCAAAAGAAAAATGTTGCAAAGAAGCAGAGCAGTTCTTGAA
GAAGCCACAAAACATCTTTCGAGAGAAGGGCTTTATTCTCGGCTATTTTC
CACCACCAATTATCCATTTCAAAAGCAGGATAATCCTCAAAGTCCAGAAA
AAGCGAGTTCCATTTATGGTTTTTCTGCATTGGATATCGATGGTAATATA
GTGAATCTTTCCAAATACAATGGATTGGTCACCTACTTTGTTAATGTTGC
TTCAGAATGAGGCTTGACGAAGACCAATTATGCTCAAATGATCGAATTAC
AAAAGCGATATGGTGAGCAAGGTCTTCGTGTACTCGCATTCCCATGCAAT
CAATTTAATGCACAGGAACCAGGTNCTTCAGAATGAGGCTTGACGAAGAC
CAATTATGCTCAAATGATCGAATTACAAAAGCGATATGGTGAGCAAGGTC
TTCGTGTACTCGCATTCCCATGCAATCAATTTAATGGACAGGAACCAGGC
GACAACAAACAAATCAAAGAGTTTGCTGCCAATAAAGGGTGTAATTTTGA
TATGTTCAGCAAAATTAATGTGAATGGTGCTGGAGCACATCCTTTGTTTA
TTTATTTGAAAAGTAAACAACATGGCATGTTGACGAATGACATTAAATGG
AACTTTTCCAAATTTCTGTGCAATCGACATGGTGTACCAGTGAAACGCTA
CTCTCCAACTGATACTCCTTTGAACGCCGAAAATGATATCAAAGCTGAAC
TTAATAAGCAATGATTTCGTAATAAGGCCAAATGGTTTTTGGAAAGGAGA
AAAACTTGATATGAATTATTTTTTAAAAGATAACCTCAATGAATTATTTT
TTTGTTTATTCCATTGCTTCTTTTTTGCTACTGCTTATGATGGTAAAACT
C

Coding sequence (CDS) from alignment at sc0000411:56200..66950-

>TCONS_00022322 ID=TCONS_00022322|Name=TCONS_00022322|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0000411:56200..66950- (Clytia hemisphaerica)
ATCCTTTGTTTATTTATTTGAAAAGTAAACAACATGGCATGTTGACGAAT
GACATTAAATGGAACTTTTCCAAATTTCTGTGCAATCGACATGGTGTACC
AGTGAAACGCTACTCTCCAACTGATACTCCTTTGAACGCCGAAAATGATA
TCAAAGCTGAACTTAATAAGCAATGAATGATCGAATTACAAAAGCGATAT
GGTGAGCAAGGTCTTCGTGTACTCGCATTCCCATGCAATCAATTTAATGG
ACAGGAACCAGGCGACAACAAACAAATCAAAGAGTTTGCTGCCAATAAAG
GGTGTAATTTTGATATGTTCAGCAAAATTAATGTGAATGGTGCCGGAGCA
CATCCTTTGTTTATTTATTTGAAAAGTAAACAACATGGCATGTTGACGAA
TGACATTAAATGGAACTTTTCCAAATTTCTGTGCAATCGACATGGTGTAC
CAGTGAAACGCTACTCTCCAACTGATACTCCTTTGAACGCCGAAAATGAT
ATCAAAGCTGAACTTAATAAGCAATGAATGATCGAATTACAAAAGCGATA
TGGTGAGCAAGGTCTTCGTGTACTCGCATTCCCATGCAATCAATTTAATG
GACAGGAACCAGGCGACAACAAACAAATCAAAGAGTTTGCTGCCAATAAA
GGGTGTAATTTTGATATGTTCAGCAAAATTAATGTGAATGGTGCCGGAGC
AC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012518XLOC_012518Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022322-proteinTCONS_00022322-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022322-exon-sc0000411-1575043694:66803..66950TCONS_00022322-exon-sc0000411-1575043694:66803..66950Clytia hemisphaericaexon
TCONS_00022322-exon-sc0000411-1575043694:57763..58228TCONS_00022322-exon-sc0000411-1575043694:57763..58228Clytia hemisphaericaexon
TCONS_00022322-exon-sc0000411-1575043694:56200..56512TCONS_00022322-exon-sc0000411-1575043694:56200..56512Clytia hemisphaericaexon
TCONS_00022322-exon-sc0000411-1510915933:66803..66950TCONS_00022322-exon-sc0000411-1510915933:66803..66950Clytia hemisphaericaexon
TCONS_00022322-exon-sc0000411-1510915933:57763..58228TCONS_00022322-exon-sc0000411-1510915933:57763..58228Clytia hemisphaericaexon
TCONS_00022322-exon-sc0000411-1510915933:56200..56512TCONS_00022322-exon-sc0000411-1510915933:56200..56512Clytia hemisphaericaexon
TCONS_00022322-exon-sc0000411-1491911889:66803..66950TCONS_00022322-exon-sc0000411-1491911889:66803..66950Clytia hemisphaericaexon
TCONS_00022322-exon-sc0000411-1491911889:57763..58228TCONS_00022322-exon-sc0000411-1491911889:57763..58228Clytia hemisphaericaexon
TCONS_00022322-exon-sc0000411-1491911889:56200..56512TCONS_00022322-exon-sc0000411-1491911889:56200..56512Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000411supercontigsc0000411:56200..66950 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.30447	7.10204	2.51601	1.88108	11.0309	5.34362	10.2872	8.76602	20.9771	17.6484	17.8839	15.3635	12.9333	13.572	8.45674	7.72303	10.935	13.5332	1.7203	1.75698	4.91489	4.19482	4.81029	4.0644	10.6813	13.0285	5.58914	3.11712	3.51251	3.07589
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000889Glutathione_peroxidase
IPR029760GPX_CS
IPR012336Thioredoxin-like_fold
Vocabulary: Biological Process
TermDefinition
GO:0006979response to oxidative stress
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0004602glutathione peroxidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006979 response to oxidative stress
molecular_function GO:0004602 glutathione peroxidase activity
Blast
[Close]
BLAST of TCONS_00022322 vs. Swiss-Prot (Human)
Match: GPX4 (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Homo sapiens GN=GPX4 PE=1 SV=3)

HSP 1 Score: 184.496 bits (467), Expect = 1.839e-56
Identity = 88/156 (56.41%), Postives = 112/156 (71.79%), Query Frame = 2 
Query:  305 ASSIYDFSALDIDGNIVNLSKYNGLVTYIVNVASE*GLTKTNYAQMIELQKRYGEQGLRVLAFPCNQFNGQEPGDNKQIKEFAANKGCNFDMFSKINVNGAGAHPLFIYLK--SKQHGMLTNDIKWNFSKFLCNRHGVPVKRYSPTDTPLNAENDI 766
            A S+++FSA DIDG++VNL KY G V  + NVAS+ G T+ NY Q+++L  RY E GLR+LAFPCNQF  QEPG N++IKEFAA     FDMFSKI VNG  AHPL+ ++K   K  G+L N IKWNF+KFL +++G  VKRY P + PL  E D+
Sbjct:   38 ARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193
The following BLAST results are available for this feature:
BLAST of TCONS_00022322 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GPX41.839e-5656.41Phospholipid hydroperoxide glutathione peroxidase,... [more]
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