TCONS_00022317 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022317
Unique NameTCONS_00022317
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1158

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022317 ID=TCONS_00022317|Name=TCONS_00022317|organism=Clytia hemisphaerica|type=transcript|length=1158bp
TTTGAACGTGGTGCAAATAAGAAAGAGAAAGGAGGGGCTGGTAAGAACAA
GAAGAACATTTATGGAGGGAAAAAGAAGAAGGGGCGAGATGAAGATGACT
TCAAACAAGATtctgatgaagaagaagaagcagaCATGCTCGAATCCAAA
GAAGTCGATTACATGTCCGAAAGCTCTTCCGAGGACGAGTTGAAGGAGAT
GGACGATGAACCGGACCCTGAGAAAGCGTCCACCAAGCAGAAAGCGAAAG
ACGACTTGAACTTATTCTCCGATACTTCTTCTGAAGACGAAGACgatgaa
gaagaagataaaCAACTCAACCAAGCTGGAAAACAACTCAAAGCAATGCT
TAAGAGTGAATCAGGTGAACGAAGCTCTGATGAAGAAGACGATGACGAGG
ATATCGATGATCAATATTCAAAGAACGCCATGCTTATCCAAGGGAAGGAT
ggtaaaaagaagaagaaaaacggCAGTAACAACGGATCGAAGCCAACAAG
TCGCTCCTCCACACCTGTTCAACATCAGAAAGATCAAGACTCCTCCACAT
CGGATACTCTTTCGCAAGCTGCCAAATCGCTCAAAGATGCTGGTTCAAAA
CGAGGTCACGACAGCTCATCAGTCCCTTCACCCGGATCGAAGAAACAAAA
GTTCAATTCATCCGTTTCATCGGGAGGGCGTTCCAACAGTCCGCTCACTG
TGCCCTCGTCCGCCGGAAACGATCGAAGCGCGTCACCGGCCGTCCGCTCG
TCTACACCTTCAGATGGACACAATATAACTGAAAGCGCTATAAGACGTTA
TCTCACGCACAAACCAATGACTACTGCGGATTTAATGCGAAAATTTAAAC
CGAAAAAGACTGGATTAAGTAAAGAGCAGACCGTTAGTGCAattgccgcc
atcttgaaaaaaatacaacCCCACCAGGAGAAAATTGAAGGAAAATTGTA
TCTAtcgataaagaataaaaaatgaaacaaatcaTATTGTCCTTATTTAA
TTTTCGGGTCGAAAAGAATTTCAGAGCTTCAGAAATACAGCTTATGAAAC
TTATCATTGGGACATTTGTGTGTTTTAAAACGTTTTGTAGTTGTAGTACT
TaagtttttatcttatttataattttttttttgaaaaataaggatTATTC
TAAAACAT
Run BLAST on NCBI

transcript from alignment at sc0000411:44119..48345-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022317 ID=TCONS_00022317|Name=TCONS_00022317|organism=Clytia hemisphaerica|type=transcript|length=4227bp|location=Sequence derived from alignment at sc0000411:44119..48345- (Clytia hemisphaerica)
TTTGAACGTGGTGCAAATAAGAAAGGTTTGTAACTGTGTTATTGTTTTGA
ACGTGGTGCAAATAAGAAAGGTTTGTAACTGTGTTATTGTTTTGAACGTG
GTGTAAATAAAAAAGGGTTTGTCACTGTGTTATTGCTTTGAACGTGGTGC
AAATAAGAAAGGTTTGTAACTGTGTTATTGTTTTGAACGTGGTGCAAATA
AGAAAGGTTTGTAACTGTGTTATTGTTTTGAACGTGGTGTAAATAAAAAA
GGGTTTGTCACTGTGTTATTGCTTTGAACGTGGTGCAAATAAGAAAGGTT
TGTAACTGTGTTATTGTTTTGAACGTGGTGTAAATAAGAAAGGTTTGTCA
CTGTGTTATTGTTTTGAACGTGGTGCAAATAAGAAAGGTTTGTAACTGTG
TTATTGTTTTGAACGTGGTGCAAATAAGAAAAGTTTGTCACTGTGTTATT
GTTTTGAACGTGGTGTAAATAAGAAAGGTTTGTTACTGTGTTATTGCTCT
GAACGTGGTGCAAATAAGAAAGGTTTGTCACTGTGTTATTGTTTTGAACG
TGGTGCAAATAAGAAAAGTTTGTCACTGTGTTATTGTTTTGAACGTGGTG
TAAATAAAAAAGGTTTGTCACTGTGTTATTGATTTGAACGTGGTGCAAAT
AAAAAAGGTTTGTCACTGTGTTATTGCTTTGAACGTGGTGTAAATAAGAA
AGGTTTGTCACTGTGTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTGAACGTGGTGCAAATAAGA
AAAGTTTGTCACTGTGTTATTGTTTTGAACGTGGTGTAAANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCTTTGAACGTGGTGTAAATAAGAAA
GGTTTGTCATTGTGTTATTGTTTTGAACGTGGTGCAAATAAGAAAAGTTT
GTCACTGTGTTATTGCTTTGAACGTGGTGCAACTAAAAAAGGTTTGTCAC
TGTGTTATTGTTTTGAACGTGTTGTAAATAAAAAAGGTTTGTCACTGTGT
TATTGCTTTGAACGTGGTGTAAATAAGAAAGGTTTGTCATTGTGTTAATG
TTTTGAACGTGGTGCAAATAAGAAAAGTTTGTCACTGTGTTATTGCTTTG
AACGTGGTGCAACTAAAAAAGGTTTGTCACTGTGTTATTGTTTTGAACGT
GTTGTAAATAAGAAAAGTTTGTCACTGTGTTATTGCTTTGAACGTGGTGC
AACTAAAAAAGGTTTGTCACTGTGTTATTGTTTTGAACGTGTTGTAAATA
AGAAAAGTTTGTCACTGTGTTATTGCTTTGAATGTGGTGTAAATAAGAAA
GGTTTGTCACTGTGTTATTGCTTTGAATGTGGTGTAAATAAGAAATGTTT
GTCACTGTGTTATTGCTTTGAACGTGGTGCAAATAAGAAAAGTTTGTCAC
TGTATTATTGTTTTGAACGTGGTGCAAATAAGAAAAGTTTGTCACTGTGT
TATTGTTTTCGGAATCAGATGAGACTAAATATCCTTTATCATTCTGTGGA
TAATCCACACTGTTTTAGATTGAATATCCATAAGTTTCATGATGAATTGT
TTATTTTAGAGAAAGGAGGGGCTGGTAAGAACAAGAAGAACATTTATGGA
GGGAAAAAGAAGAAGGGGCGAGATGAAGATGACTTCAAACAAGATTCTGA
TGAAGAAGAAGAAGCAGACATGCTCGAATCCAAAGAAGTCGATTACATGT
CCGAAAGCTCTTCCGGTATCTCTCTTTCACTTTTGCTTACATGGCCTGTT
CGTTAGCGTCCTGGTTGTATGTGCAGGTACACTTGGCCATATTGAAATCT
TATTGATATCTTTAAAAACAAAAAAAGATACACACATTCTTCAATTCATA
CTTTCGTATATTGCTCATTTTATTTTCTTCAACGTTTGAGTTACGTACAT
CTACTTGAGGTTTTTTAAAATCAATTTGACGTCGATTTAGCCTGAAATAA
ATCCTATGTTCCAAGTGGTTTCTTTAGACATTATTCTGTTTGTTTTTGTG
CAGAGGACGAGTTGAAGGAGATGGACGATGAACCGGACCCTGAGAAAGCG
TCCACCAAGCAGAAAGCGAAAGACGACTTGAACTTATTCTCCGATACTTC
TTCTGAAGACGAAGACGATGAAGAAGAAGATAAACAACTCAACCAAGCTG
GAAAACAACTCAAAGCAATGCTTAAGGTGATCCTTCTTACTACTCCCCCT
GTCTGCCCCTGTTGGAAAAGAAATCTGAAATTGACTTCACATATTCAACT
ATGGTATTTGTTTTCGTACGTCAGTTCTTTATAAAATCGCTTAAAATGTA
TATCAAATTTTGTTTCCTCGTCGTACAATAAAGTGTTTATTTTTTTGTGA
GGACTTCTTTATGACAACACATCAATCATTGGTTTCATTTTTTCCACTTC
TCACATANAAATGTCTGAAAATGTACGTCAAATTTTGTTTCCTCATTTTT
TTTGTGAGGACTTCTGTAATGACTTCTGAAATGTACAACACATCAATTAT
TGGTTTCATTTTTTCCACTTCGCACATGCGCAGAGTGAATCAGGTGAACG
AAGCTCTGATGAAGAAGACGATGACGAGGATATCGATGATCAATATTCAA
AGAACGCCATGCTTATCCAAGGTGAGTACTGCGCTTCATATTCAAAGTTG
ATATCTGGTAGCAAATTATTGATACCTTCTCAATGCCATTGATCACGTCT
TCGTTCTGATTTCAATCATTTTATGTCAATTTTCTCGGCCAAATCAATAC
AAAGTGCTGTATAAAATACCTTTAATGATACTACACGTTTTATCTTATTT
GAAATGGTTAGCGGCCAAGAGTGTGATCAATTGATTTTCTTCTCTTTCAG
GGAAGGATGGTAAAAAGAAGAAGAAAAACGGCAGTAACAACGGATCGAAG
CCAACAAGTCGCTCCTCCACACCTGTTCAACATCAGAAAGATCAAGACTC
CTCCACATCGGATACTCTTTCGCAAGCTGCCAAATCGCTCAAAGATGGTA
TTTCATCTATTTTTATTTTTTCTGTTCGTTTCATATTAGCTTTAAATTAA
TTGTTCTTCAATGTGAAATCTTTTTTATCCGTCTTCAATTCACCTTCACA
CTTTTCAGCTGGTTCAAAACGAGGTCACGACAGCTCATCAGTCCCTTCAC
CCGGATCGAAGAAACAAAAGTTCAATTCATCCGTTTCATCGGGAGGGCGT
TCCAACAGTCCGCTCACTGTGCCCTCGTCCGCCGGAAACGATCGAAGCGC
GTCACCGGCCGTCCGCTCGTCTACACCTTCAGATGGACACAATATAACTG
AAAGCGCTATAAGACGTTATCTCACGCACAAACCAATGACTACTGCGGAT
TTAATGCGAAAATTTAAACCGAAAAAGACTGGATTAAGTAAAGAGCAGAC
CGTTAGTGCAATTGCCGCCATCTTGAAAAAAATACAACCCCACCAGGAGA
AAATTGAAGGAAAATTGTATCTATCGATAAAGAATAAAAAATGAAACAAA
TCATATTGTCCTTATTTAATTTTCGGGTCGAAAAGAATTTCAGAGCTTCA
GAAATACAGCTTATGAAACTTATCATTGGGACATTTGTGTGTTTTAAAAC
GTTTTGTAGTTGTAGTACTTAAGTTTTTATCTTATTTATAATTTTTTTTT
TGAAAAATAAGGATTATTCTAAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012517XLOC_012517Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022317-exon-sc0000411-1575043694:48321..48345TCONS_00022317-exon-sc0000411-1575043694:48321..48345Clytia hemisphaericaexon
TCONS_00022317-exon-sc0000411-1575043694:46081..46236TCONS_00022317-exon-sc0000411-1575043694:46081..46236Clytia hemisphaericaexon
TCONS_00022317-exon-sc0000411-1575043694:45620..45792TCONS_00022317-exon-sc0000411-1575043694:45620..45792Clytia hemisphaericaexon
TCONS_00022317-exon-sc0000411-1575043694:45175..45262TCONS_00022317-exon-sc0000411-1575043694:45175..45262Clytia hemisphaericaexon
TCONS_00022317-exon-sc0000411-1575043694:44799..44945TCONS_00022317-exon-sc0000411-1575043694:44799..44945Clytia hemisphaericaexon
TCONS_00022317-exon-sc0000411-1575043694:44119..44687TCONS_00022317-exon-sc0000411-1575043694:44119..44687Clytia hemisphaericaexon
TCONS_00022317-exon-sc0000411-1510915933:48321..48345TCONS_00022317-exon-sc0000411-1510915933:48321..48345Clytia hemisphaericaexon
TCONS_00022317-exon-sc0000411-1510915933:46081..46236TCONS_00022317-exon-sc0000411-1510915933:46081..46236Clytia hemisphaericaexon
TCONS_00022317-exon-sc0000411-1510915933:45620..45792TCONS_00022317-exon-sc0000411-1510915933:45620..45792Clytia hemisphaericaexon
TCONS_00022317-exon-sc0000411-1510915933:45175..45262TCONS_00022317-exon-sc0000411-1510915933:45175..45262Clytia hemisphaericaexon
TCONS_00022317-exon-sc0000411-1510915933:44799..44945TCONS_00022317-exon-sc0000411-1510915933:44799..44945Clytia hemisphaericaexon
TCONS_00022317-exon-sc0000411-1510915933:44119..44687TCONS_00022317-exon-sc0000411-1510915933:44119..44687Clytia hemisphaericaexon
TCONS_00022317-exon-sc0000411-1491911889:48321..48345TCONS_00022317-exon-sc0000411-1491911889:48321..48345Clytia hemisphaericaexon
TCONS_00022317-exon-sc0000411-1491911889:46081..46236TCONS_00022317-exon-sc0000411-1491911889:46081..46236Clytia hemisphaericaexon
TCONS_00022317-exon-sc0000411-1491911889:45620..45792TCONS_00022317-exon-sc0000411-1491911889:45620..45792Clytia hemisphaericaexon
TCONS_00022317-exon-sc0000411-1491911889:45175..45262TCONS_00022317-exon-sc0000411-1491911889:45175..45262Clytia hemisphaericaexon
TCONS_00022317-exon-sc0000411-1491911889:44799..44945TCONS_00022317-exon-sc0000411-1491911889:44799..44945Clytia hemisphaericaexon
TCONS_00022317-exon-sc0000411-1491911889:44119..44687TCONS_00022317-exon-sc0000411-1491911889:44119..44687Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000411supercontigsc0000411:44119..48345 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.81971	1.30499	1.1807	2.12242	0.536064	0.378488	0.528341	0.226286	0.597752	1.13127	0.925259	0.409609	0.673987	0.649954	0.548333	0.715633	0.787086	1.35603	0.556449	0.291893	0.575193	0.670247	1.12502	0.891131	0.256556	0	0.321406	0.755892	0.520795	1.05441
Blast
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BLAST of TCONS_00022317 vs. Swiss-Prot (Human)
Match: T2FA (General transcription factor IIF subunit 1 OS=Homo sapiens GN=GTF2F1 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.542e-18
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:  697 TVPSSAGNDRSASPAVRSSTPSDGH-NITESAIRRYLTHKPMTTADLMRKFKPKKTGLSKEQTVSAIAAILKKIQPHQEKIEGKLYLSIK 963
            T P S     +  P    +TP+ G   +TE A+RRYLT KPMTT DL++KF+ KKTGLS EQTV+ +A ILK++ P ++ I  K++ S+K
Sbjct:  427 TGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLKKFQTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLK 516
The following BLAST results are available for this feature:
BLAST of TCONS_00022317 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
T2FA2.542e-1847.78General transcription factor IIF subunit 1 OS=Homo... [more]
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