TCONS_00022316 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022316
Unique NameTCONS_00022316
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1159

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022316 ID=TCONS_00022316|Name=TCONS_00022316|organism=Clytia hemisphaerica|type=transcript|length=1159bp
ttttgaacgtggtgcaaataagaaagAGAAAGGAGGGGCTGGTAAGAACA
AGAAGAACATTTATGGAGGGAAAAAGAAGAAGGGGCGAGATGAAGATGAC
TTCAAACAAGATtctgatgaagaagaagaagcagaCATGCTCGAATCCAA
AGAAGTCGATTACATGTCCGAAAGCTCTTCCGAGGACGAGTTGAAGGAGA
TGGACGATGAACCGGACCCTGAGAAAGCGTCCACCAAGCAGAAAGCGAAA
GACGACTTGAACTTATTCTCCGATACTTCTTCTGAAGACGAAGACgatga
agaagaagataaaCAACTCAACCAAGCTGGAAAACAACTCAAAGCAATGC
TTAAGAGTGAATCAGGTGAACGAAGCTCTGATGAAGAAGACGATGACGAG
GATATCGATGATCAATATTCAAAGAACGCCATGCTTATCCAAGGGAAGGA
TggtaaaaagaagaagaaaaacggCAGTAACAACGGATCGAAGCCAACAA
GTCGCTCCTCCACACCTGTTCAACATCAGAAAGATCAAGACTCCTCCACA
TCGGATACTCTTTCGCAAGCTGCCAAATCGCTCAAAGATGCTGGTTCAAA
ACGAGGTCACGACAGCTCATCAGTCCCTTCACCCGGATCGAAGAAACAAA
AGTTCAATTCATCCGTTTCATCGGGAGGGCGTTCCAACAGTCCGCTCACT
GTGCCCTCGTCCGCCGGAAACGATCGAAGCGCGTCACCGGCCGTCCGCTC
GTCTACACCTTCAGATGGACACAATATAACTGAAAGCGCTATAAGACGTT
ATCTCACGCACAAACCAATGACTACTGCGGATTTAATGCGAAAATTTAAA
CCGAAAAAGACTGGATTAAGTAAAGAGCAGACCGTTAGTGCAattgccgc
catcttgaaaaaaatacaacCCCACCAGGAGAAAATTGAAGGAAAATTGT
ATCTAtcgataaagaataaaaaatgaaacaaatcaTATTGTCCTTATTTA
ATTTTCGGGTCGAAAAGAATTTCAGAGCTTCAGAAATACAGCTTATGAAA
CTTATCATTGGGACATTTGTGTGTTTTAAAACGTTTTGTAGTTGTAGTAC
TTaagtttttatcttatttataattttttttttgaaaaataaggatTATT
CTAAAACAT
Run BLAST on NCBI

transcript from alignment at sc0000411:44119..48301-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022316 ID=TCONS_00022316|Name=TCONS_00022316|organism=Clytia hemisphaerica|type=transcript|length=4183bp|location=Sequence derived from alignment at sc0000411:44119..48301- (Clytia hemisphaerica)
TTTTGAACGTGGTGCAAATAAGAAAGGTTTGTAACTGTGTTATTGTTTTG
AACGTGGTGTAAATAAAAAAGGGTTTGTCACTGTGTTATTGCTTTGAACG
TGGTGCAAATAAGAAAGGTTTGTAACTGTGTTATTGTTTTGAACGTGGTG
CAAATAAGAAAGGTTTGTAACTGTGTTATTGTTTTGAACGTGGTGTAAAT
AAAAAAGGGTTTGTCACTGTGTTATTGCTTTGAACGTGGTGCAAATAAGA
AAGGTTTGTAACTGTGTTATTGTTTTGAACGTGGTGTAAATAAGAAAGGT
TTGTCACTGTGTTATTGTTTTGAACGTGGTGCAAATAAGAAAGGTTTGTA
ACTGTGTTATTGTTTTGAACGTGGTGCAAATAAGAAAAGTTTGTCACTGT
GTTATTGTTTTGAACGTGGTGTAAATAAGAAAGGTTTGTTACTGTGTTAT
TGCTCTGAACGTGGTGCAAATAAGAAAGGTTTGTCACTGTGTTATTGTTT
TGAACGTGGTGCAAATAAGAAAAGTTTGTCACTGTGTTATTGTTTTGAAC
GTGGTGTAAATAAAAAAGGTTTGTCACTGTGTTATTGATTTGAACGTGGT
GCAAATAAAAAAGGTTTGTCACTGTGTTATTGCTTTGAACGTGGTGTAAA
TAAGAAAGGTTTGTCACTGTGTTATNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTGAACGTGGTGCAA
ATAAGAAAAGTTTGTCACTGTGTTATTGTTTTGAACGTGGTGTAAANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTGAACGTGGTGTAAAT
AAGAAAGGTTTGTCATTGTGTTATTGTTTTGAACGTGGTGCAAATAAGAA
AAGTTTGTCACTGTGTTATTGCTTTGAACGTGGTGCAACTAAAAAAGGTT
TGTCACTGTGTTATTGTTTTGAACGTGTTGTAAATAAAAAAGGTTTGTCA
CTGTGTTATTGCTTTGAACGTGGTGTAAATAAGAAAGGTTTGTCATTGTG
TTAATGTTTTGAACGTGGTGCAAATAAGAAAAGTTTGTCACTGTGTTATT
GCTTTGAACGTGGTGCAACTAAAAAAGGTTTGTCACTGTGTTATTGTTTT
GAACGTGTTGTAAATAAGAAAAGTTTGTCACTGTGTTATTGCTTTGAACG
TGGTGCAACTAAAAAAGGTTTGTCACTGTGTTATTGTTTTGAACGTGTTG
TAAATAAGAAAAGTTTGTCACTGTGTTATTGCTTTGAATGTGGTGTAAAT
AAGAAAGGTTTGTCACTGTGTTATTGCTTTGAATGTGGTGTAAATAAGAA
ATGTTTGTCACTGTGTTATTGCTTTGAACGTGGTGCAAATAAGAAAAGTT
TGTCACTGTATTATTGTTTTGAACGTGGTGCAAATAAGAAAAGTTTGTCA
CTGTGTTATTGTTTTCGGAATCAGATGAGACTAAATATCCTTTATCATTC
TGTGGATAATCCACACTGTTTTAGATTGAATATCCATAAGTTTCATGATG
AATTGTTTATTTTAGAGAAAGGAGGGGCTGGTAAGAACAAGAAGAACATT
TATGGAGGGAAAAAGAAGAAGGGGCGAGATGAAGATGACTTCAAACAAGA
TTCTGATGAAGAAGAAGAAGCAGACATGCTCGAATCCAAAGAAGTCGATT
ACATGTCCGAAAGCTCTTCCGGTATCTCTCTTTCACTTTTGCTTACATGG
CCTGTTCGTTAGCGTCCTGGTTGTATGTGCAGGTACACTTGGCCATATTG
AAATCTTATTGATATCTTTAAAAACAAAAAAAGATACACACATTCTTCAA
TTCATACTTTCGTATATTGCTCATTTTATTTTCTTCAACGTTTGAGTTAC
GTACATCTACTTGAGGTTTTTTAAAATCAATTTGACGTCGATTTAGCCTG
AAATAAATCCTATGTTCCAAGTGGTTTCTTTAGACATTATTCTGTTTGTT
TTTGTGCAGAGGACGAGTTGAAGGAGATGGACGATGAACCGGACCCTGAG
AAAGCGTCCACCAAGCAGAAAGCGAAAGACGACTTGAACTTATTCTCCGA
TACTTCTTCTGAAGACGAAGACGATGAAGAAGAAGATAAACAACTCAACC
AAGCTGGAAAACAACTCAAAGCAATGCTTAAGGTGATCCTTCTTACTACT
CCCCCTGTCTGCCCCTGTTGGAAAAGAAATCTGAAATTGACTTCACATAT
TCAACTATGGTATTTGTTTTCGTACGTCAGTTCTTTATAAAATCGCTTAA
AATGTATATCAAATTTTGTTTCCTCGTCGTACAATAAAGTGTTTATTTTT
TTGTGAGGACTTCTTTATGACAACACATCAATCATTGGTTTCATTTTTTC
CACTTCTCACATANAAATGTCTGAAAATGTACGTCAAATTTTGTTTCCTC
ATTTTTTTTGTGAGGACTTCTGTAATGACTTCTGAAATGTACAACACATC
AATTATTGGTTTCATTTTTTCCACTTCGCACATGCGCAGAGTGAATCAGG
TGAACGAAGCTCTGATGAAGAAGACGATGACGAGGATATCGATGATCAAT
ATTCAAAGAACGCCATGCTTATCCAAGGTGAGTACTGCGCTTCATATTCA
AAGTTGATATCTGGTAGCAAATTATTGATACCTTCTCAATGCCATTGATC
ACGTCTTCGTTCTGATTTCAATCATTTTATGTCAATTTTCTCGGCCAAAT
CAATACAAAGTGCTGTATAAAATACCTTTAATGATACTACACGTTTTATC
TTATTTGAAATGGTTAGCGGCCAAGAGTGTGATCAATTGATTTTCTTCTC
TTTCAGGGAAGGATGGTAAAAAGAAGAAGAAAAACGGCAGTAACAACGGA
TCGAAGCCAACAAGTCGCTCCTCCACACCTGTTCAACATCAGAAAGATCA
AGACTCCTCCACATCGGATACTCTTTCGCAAGCTGCCAAATCGCTCAAAG
ATGGTATTTCATCTATTTTTATTTTTTCTGTTCGTTTCATATTAGCTTTA
AATTAATTGTTCTTCAATGTGAAATCTTTTTTATCCGTCTTCAATTCACC
TTCACACTTTTCAGCTGGTTCAAAACGAGGTCACGACAGCTCATCAGTCC
CTTCACCCGGATCGAAGAAACAAAAGTTCAATTCATCCGTTTCATCGGGA
GGGCGTTCCAACAGTCCGCTCACTGTGCCCTCGTCCGCCGGAAACGATCG
AAGCGCGTCACCGGCCGTCCGCTCGTCTACACCTTCAGATGGACACAATA
TAACTGAAAGCGCTATAAGACGTTATCTCACGCACAAACCAATGACTACT
GCGGATTTAATGCGAAAATTTAAACCGAAAAAGACTGGATTAAGTAAAGA
GCAGACCGTTAGTGCAATTGCCGCCATCTTGAAAAAAATACAACCCCACC
AGGAGAAAATTGAAGGAAAATTGTATCTATCGATAAAGAATAAAAAATGA
AACAAATCATATTGTCCTTATTTAATTTTCGGGTCGAAAAGAATTTCAGA
GCTTCAGAAATACAGCTTATGAAACTTATCATTGGGACATTTGTGTGTTT
TAAAACGTTTTGTAGTTGTAGTACTTAAGTTTTTATCTTATTTATAATTT
TTTTTTTGAAAAATAAGGATTATTCTAAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012517XLOC_012517Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022316-exon-sc0000411-1575043694:48276..48301TCONS_00022316-exon-sc0000411-1575043694:48276..48301Clytia hemisphaericaexon
TCONS_00022316-exon-sc0000411-1575043694:46081..46236TCONS_00022316-exon-sc0000411-1575043694:46081..46236Clytia hemisphaericaexon
TCONS_00022316-exon-sc0000411-1575043694:45620..45792TCONS_00022316-exon-sc0000411-1575043694:45620..45792Clytia hemisphaericaexon
TCONS_00022316-exon-sc0000411-1575043694:45175..45262TCONS_00022316-exon-sc0000411-1575043694:45175..45262Clytia hemisphaericaexon
TCONS_00022316-exon-sc0000411-1575043694:44799..44945TCONS_00022316-exon-sc0000411-1575043694:44799..44945Clytia hemisphaericaexon
TCONS_00022316-exon-sc0000411-1575043694:44119..44687TCONS_00022316-exon-sc0000411-1575043694:44119..44687Clytia hemisphaericaexon
TCONS_00022316-exon-sc0000411-1510915933:48276..48301TCONS_00022316-exon-sc0000411-1510915933:48276..48301Clytia hemisphaericaexon
TCONS_00022316-exon-sc0000411-1510915933:46081..46236TCONS_00022316-exon-sc0000411-1510915933:46081..46236Clytia hemisphaericaexon
TCONS_00022316-exon-sc0000411-1510915933:45620..45792TCONS_00022316-exon-sc0000411-1510915933:45620..45792Clytia hemisphaericaexon
TCONS_00022316-exon-sc0000411-1510915933:45175..45262TCONS_00022316-exon-sc0000411-1510915933:45175..45262Clytia hemisphaericaexon
TCONS_00022316-exon-sc0000411-1510915933:44799..44945TCONS_00022316-exon-sc0000411-1510915933:44799..44945Clytia hemisphaericaexon
TCONS_00022316-exon-sc0000411-1510915933:44119..44687TCONS_00022316-exon-sc0000411-1510915933:44119..44687Clytia hemisphaericaexon
TCONS_00022316-exon-sc0000411-1491911889:48276..48301TCONS_00022316-exon-sc0000411-1491911889:48276..48301Clytia hemisphaericaexon
TCONS_00022316-exon-sc0000411-1491911889:46081..46236TCONS_00022316-exon-sc0000411-1491911889:46081..46236Clytia hemisphaericaexon
TCONS_00022316-exon-sc0000411-1491911889:45620..45792TCONS_00022316-exon-sc0000411-1491911889:45620..45792Clytia hemisphaericaexon
TCONS_00022316-exon-sc0000411-1491911889:45175..45262TCONS_00022316-exon-sc0000411-1491911889:45175..45262Clytia hemisphaericaexon
TCONS_00022316-exon-sc0000411-1491911889:44799..44945TCONS_00022316-exon-sc0000411-1491911889:44799..44945Clytia hemisphaericaexon
TCONS_00022316-exon-sc0000411-1491911889:44119..44687TCONS_00022316-exon-sc0000411-1491911889:44119..44687Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000411supercontigsc0000411:44119..48301 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.24206	0.819416	0.278353	0.571974	0.151636	0.0992444	0.151671	0.132878	0.388356	0.327502	0.266456	0.108542	0.158226	0.121027	0.293646	0.159553	0.197038	0.309745	0.152026	0.0710984	0.133478	0.175193	0.909365	0.191895	0.0648376	0	0.827341	0.194278	0.673924	0.311094
Blast
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BLAST of TCONS_00022316 vs. Swiss-Prot (Human)
Match: T2FA (General transcription factor IIF subunit 1 OS=Homo sapiens GN=GTF2F1 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.542e-18
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 2 
Query:  698 TVPSSAGNDRSASPAVRSSTPSDGH-NITESAIRRYLTHKPMTTADLMRKFKPKKTGLSKEQTVSAIAAILKKIQPHQEKIEGKLYLSIK 964
            T P S     +  P    +TP+ G   +TE A+RRYLT KPMTT DL++KF+ KKTGLS EQTV+ +A ILK++ P ++ I  K++ S+K
Sbjct:  427 TGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLKKFQTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLK 516
The following BLAST results are available for this feature:
BLAST of TCONS_00022316 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
T2FA2.542e-1847.78General transcription factor IIF subunit 1 OS=Homo... [more]
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